Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:27068856-29109764

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35438 19 27101951 to 27316698 214747 - lncRNA gene predicted gene, 35438
D19Dcr7 19 27202598 to 27202698 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 7
Vldlr 19 27216489 to 27254231 37742 + protein coding gene very low density lipoprotein receptor
Cpgi10723 19 27216616 to 27219235 2619 CpG island CpG island 10723
Tssr155729 19 27216881 to 27216891 10 + TSS region transcription start site region 155729
Tssr155730 19 27217011 to 27217042 31 + TSS region transcription start site region 155730
Tssr155731 19 27217047 to 27217056 9 + TSS region transcription start site region 155731
Tssr5469 19 27217069 to 27217077 8 + TSS region transcription start site region 5469
Tssr155732 19 27217101 to 27217131 30 + TSS region transcription start site region 155732
Tssr155733 19 27217406 to 27217424 18 + TSS region transcription start site region 155733
Tssr155734 19 27217509 to 27217605 96 + TSS region transcription start site region 155734
Tssr158703 19 27257415 to 27257418 3 - TSS region transcription start site region 158703
Tssr158704 19 27262264 to 27262273 9 - TSS region transcription start site region 158704
Tssr158705 19 27262297 to 27262306 9 - TSS region transcription start site region 158705
Tssr158706 19 27262317 to 27262328 11 - TSS region transcription start site region 158706
Gm35268 19 27312632 to 27321729 9097 + lncRNA gene predicted gene, 35268
Tssr155735 19 27312894 to 27312904 10 + TSS region transcription start site region 155735
Tssr155736 19 27312970 to 27312975 5 + TSS region transcription start site region 155736
Tssr155737 19 27321759 to 27321763 4 + TSS region transcription start site region 155737
Tssr155738 19 27322518 to 27322532 14 + TSS region transcription start site region 155738
Tssr155739 19 27322539 to 27322592 53 + TSS region transcription start site region 155739
Kcnv2 19 27322588 to 27337179 14591 + protein coding gene potassium channel, subfamily V, member 2
Tssr5470 19 27322600 to 27322601 1 + TSS region transcription start site region 5470
Tssr155740 19 27322609 to 27322617 8 + TSS region transcription start site region 155740
Cpgi10724 19 27323005 to 27324113 1108 CpG island CpG island 10724
Tssr155741 19 27335528 to 27335534 6 + TSS region transcription start site region 155741
Gm35554 19 27344725 to 27356409 11684 + lncRNA gene predicted gene, 35554
Tssr155742 19 27344738 to 27344768 30 + TSS region transcription start site region 155742
Tssr155743 19 27344769 to 27344782 13 + TSS region transcription start site region 155743
Pum3 19 27388702 to 27429820 41118 - protein coding gene pumilio RNA-binding family member 3
Tssr158707 19 27399084 to 27399094 10 - TSS region transcription start site region 158707
Tssr158708 19 27421381 to 27421427 46 - TSS region transcription start site region 158708
Tssr155744 19 27428838 to 27428846 8 + TSS region transcription start site region 155744
Cpgi10725 19 27429455 to 27430326 871 CpG island CpG island 10725
Tssr158709 19 27429807 to 27429870 63 - TSS region transcription start site region 158709
C030016D13Rik 19 27430037 to 27432631 2594 + lncRNA gene RIKEN cDNA C030016D13 gene
Tssr155745 19 27430136 to 27430161 25 + TSS region transcription start site region 155745
Mcsq3 19 27566000 to 31134000 3568000 QTL methacholine sensitivity QTL 3, final
Gm35697 19 27666428 to 27668494 2066 - lncRNA gene predicted gene, 35697
Gm24782 19 27703876 to 27704007 131 - snoRNA gene predicted gene, 24782
Rfx3 19 27761721 to 28011166 249445 - protein coding gene regulatory factor X, 3 (influences HLA class II expression)
Tssr158710 19 27762337 to 27762357 20 - TSS region transcription start site region 158710
Tgct4 19 27794585 to 35317981 7523396 QTL testicular germ cell tumor 4
D19Mit132 19 27794585 to 27794702 117 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 132
Gm8412 19 27858058 to 27858497 439 + pseudogene predicted gene 8412
Tssr155746 19 27906334 to 27906338 4 + TSS region transcription start site region 155746
Gm17894 19 27961274 to 27962110 836 + pseudogene predicted gene, 17894
Gm20407 19 27994197 to 27995693 1496 + unclassified non-coding RNA gene predicted gene 20407
Tssr158711 19 28009774 to 28009782 8 - TSS region transcription start site region 158711
Tssr158712 19 28009893 to 28009906 13 - TSS region transcription start site region 158712
Tssr158713 19 28010018 to 28010028 10 - TSS region transcription start site region 158713
Cpgi10726 19 28010402 to 28012332 1930 CpG island CpG island 10726
Tssr158714 19 28010995 to 28011054 59 - TSS region transcription start site region 158714
Tssr158715 19 28011082 to 28011089 7 - TSS region transcription start site region 158715
Tssr158716 19 28011096 to 28011132 36 - TSS region transcription start site region 158716
Tssr158717 19 28011138 to 28011181 43 - TSS region transcription start site region 158717
Tssr158718 19 28011186 to 28011221 35 - TSS region transcription start site region 158718
Tssr158719 19 28011507 to 28011538 31 - TSS region transcription start site region 158719
Tssr158720 19 28011555 to 28011590 35 - TSS region transcription start site region 158720
Tssr158721 19 28011594 to 28011634 40 - TSS region transcription start site region 158721
Tssr155747 19 28011740 to 28011750 10 + TSS region transcription start site region 155747
D19Dcr8 19 28015128 to 28015223 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 8
D19Mit47 19 28015954 to 28016099 145 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 47
Gm5517 19 28033455 to 28034153 698 + pseudogene predicted gene 5517
Gm28228 19 28088856 to 28089764 908 + lincRNA gene predicted gene 28228
Gm35781 19 28145864 to 28146319 455 - pseudogene predicted gene, 35781
Tssr158722 19 28146350 to 28146351 1 - TSS region transcription start site region 158722
Glis3 19 28258851 to 28680077 421226 - protein coding gene GLIS family zinc finger 3
D19Dcr9 19 28268420 to 28268516 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 9
Tssr158723 19 28283861 to 28283882 21 - TSS region transcription start site region 158723
Tssr158724 19 28283883 to 28283914 31 - TSS region transcription start site region 158724
Gm35866 19 28362542 to 28365815 3273 - lncRNA gene predicted gene, 35866
Tssr5471 19 28402405 to 28402409 4 + TSS region transcription start site region 5471
Tssr158725 19 28486291 to 28486294 3 - TSS region transcription start site region 158725
D19Mit98 19 28493507 to 28493628 121 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 98
D19Dcr10 19 28555884 to 28555979 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 10
Tssr158726 19 28560975 to 28560987 12 - TSS region transcription start site region 158726
Tssr158727 19 28561017 to 28561025 8 - TSS region transcription start site region 158727
Tssr158728 19 28561066 to 28561083 17 - TSS region transcription start site region 158728
Tssr155748 19 28578188 to 28578202 14 + TSS region transcription start site region 155748
4933413C19Rik 19 28580533 to 28583294 2761 - sense intronic lncRNA gene RIKEN cDNA 4933413C19 gene
Cpgi10727 19 28678088 to 28678510 422 CpG island CpG island 10727
D930032P07Rik 19 28678224 to 28720027 41803 + lincRNA gene RIKEN cDNA D930032P07 gene
Cpgi10728 19 28678785 to 28680407 1622 CpG island CpG island 10728
Tssr158729 19 28680110 to 28680122 12 - TSS region transcription start site region 158729
Tssr158730 19 28680132 to 28680143 11 - TSS region transcription start site region 158730
Tssr158731 19 28680165 to 28680183 18 - TSS region transcription start site region 158731
Tssr158732 19 28680202 to 28680267 65 - TSS region transcription start site region 158732
D19Dcr11 19 28691324 to 28691419 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 11
Rps15a-ps2 19 28742159 to 28742551 392 - pseudogene ribosomal protein S15A, pseudogene 2
Tssr158733 19 28742578 to 28742588 10 - TSS region transcription start site region 158733
Gm35922 19 28760033 to 28788185 28152 + lncRNA gene predicted gene, 35922
Gm6788 19 28763161 to 28763430 269 - pseudogene predicted gene 6788
Tssr158734 19 28763537 to 28763540 3 - TSS region transcription start site region 158734
Gm26942 19 28812406 to 28813202 796 - pseudogene predicted gene, 26942
Cpgi10729 19 28834608 to 28835796 1188 CpG island CpG island 10729
Tssr155749 19 28835101 to 28835116 15 + TSS region transcription start site region 155749
Tssr155750 19 28835124 to 28835142 18 + TSS region transcription start site region 155750
Slc1a1 19 28835166 to 28913960 78794 + protein coding gene solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
Gm5822 19 28862330 to 28863707 1377 - pseudogene predicted gene 5822
Tssr158735 19 28863766 to 28863767 1 - TSS region transcription start site region 158735
Tssr155751 19 28893040 to 28893043 3 + TSS region transcription start site region 155751
4430402I18Rik 19 28906829 to 28968356 61527 - protein coding gene RIKEN cDNA 4430402I18 gene
Tssr158736 19 28929126 to 28929131 5 - TSS region transcription start site region 158736
Tssr158737 19 28929223 to 28929237 14 - TSS region transcription start site region 158737
D19Dcr12 19 28955176 to 28955274 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 12
Cpgi10730 19 28963638 to 28964931 1293 CpG island CpG island 10730
Tssr155752 19 28963851 to 28963877 26 + TSS region transcription start site region 155752
Tssr158738 19 28963863 to 28963893 30 - TSS region transcription start site region 158738
Tssr155753 19 28963892 to 28963969 77 + TSS region transcription start site region 155753
Plpp6 19 28963953 to 28966811 2858 + protein coding gene phospholipid phosphatase 6
Tssr158739 19 28967794 to 28967852 58 - TSS region transcription start site region 158739
Gm3621 19 28973307 to 28974077 770 + pseudogene predicted gene 3621
Gm4844 19 28974550 to 28975633 1083 - pseudogene predicted gene 4844
Cpgi10731 19 28975037 to 28975460 423 CpG island CpG island 10731
Tssr158740 19 28975634 to 28975644 10 - TSS region transcription start site region 158740
Tssr158741 19 28975654 to 28975667 13 - TSS region transcription start site region 158741
Cpgi10732 19 28990153 to 28991203 1050 CpG island CpG island 10732
Tssr155754 19 28990347 to 28990373 26 + TSS region transcription start site region 155754
Cdc37l1 19 28990352 to 29026681 36329 + protein coding gene cell division cycle 37-like 1
Tssr155755 19 28990375 to 28990392 17 + TSS region transcription start site region 155755
Tssr155756 19 28990453 to 28990466 13 + TSS region transcription start site region 155756
Tssr155757 19 28990476 to 28990497 21 + TSS region transcription start site region 155757
Tssr158742 19 28990894 to 28990929 35 - TSS region transcription start site region 158742
Tssr5472 19 28995180 to 28995195 15 + TSS region transcription start site region 5472
Tssr155758 19 28995203 to 28995213 10 + TSS region transcription start site region 155758
Gm10136 19 29003408 to 29003842 434 - pseudogene predicted pseudogene 10136
Ak3 19 29020833 to 29047961 27128 - protein coding gene adenylate kinase 3
Tssr158743 19 29021305 to 29021324 19 - TSS region transcription start site region 158743
Tssr158744 19 29021863 to 29021903 40 - TSS region transcription start site region 158744
D19Dcr13 19 29042415 to 29042510 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 13
Tssr155759 19 29046483 to 29046513 30 + TSS region transcription start site region 155759
Cpgi10733 19 29047385 to 29048306 921 CpG island CpG island 10733
1700018L02Rik 19 29047483 to 29048729 1246 + antisense lncRNA gene RIKEN cDNA 1700018L02 gene
Tssr155760 19 29047489 to 29047527 38 + TSS region transcription start site region 155760
Tssr155761 19 29047529 to 29047534 5 + TSS region transcription start site region 155761
Tssr155762 19 29047535 to 29047580 45 + TSS region transcription start site region 155762
Tssr155763 19 29047585 to 29047594 9 + TSS region transcription start site region 155763
Tssr155764 19 29047601 to 29047607 6 + TSS region transcription start site region 155764
Tssr158745 19 29047832 to 29047844 12 - TSS region transcription start site region 158745
Tssr158746 19 29047847 to 29047977 130 - TSS region transcription start site region 158746
Tssr158747 19 29048076 to 29048081 5 - TSS region transcription start site region 158747
Tssr155765 19 29048198 to 29048207 9 + TSS region transcription start site region 155765
Tssr155766 19 29067234 to 29067245 11 + TSS region transcription start site region 155766
Tssr155767 19 29067271 to 29067297 26 + TSS region transcription start site region 155767
Gm9895 19 29067301 to 29069503 2202 + lncRNA gene predicted gene 9895
Tssr155768 19 29067307 to 29067327 20 + TSS region transcription start site region 155768
Tssr155769 19 29067341 to 29067353 12 + TSS region transcription start site region 155769
Tssr5473 19 29068707 to 29068713 6 + TSS region transcription start site region 5473
Tssr155770 19 29081736 to 29081752 16 + TSS region transcription start site region 155770
Cpgi10734 19 29100830 to 29101938 1108 CpG island CpG island 10734
Tssr5474 19 29101147 to 29101153 6 - TSS region transcription start site region 5474
Tssr155771 19 29101365 to 29101376 11 + TSS region transcription start site region 155771
Rcl1 19 29101375 to 29143843 42468 + protein coding gene RNA terminal phosphate cyclase-like 1
Tssr155772 19 29101387 to 29101438 51 + TSS region transcription start site region 155772
Tssr155773 19 29101441 to 29101452 11 + TSS region transcription start site region 155773
Tssr155774 19 29101484 to 29101497 13 + TSS region transcription start site region 155774