Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:2683551-3873703

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
n-TLaag3 19 3066556 to 3066627 71 + tRNA gene nuclear encoded tRNA leucine 3 (anticodon AAG)
Gm38527 19 3066816 to 3072894 6078 - lncRNA gene predicted gene, 38527
1200015M12Rik 19 3083614 to 3087406 3792 unclassified gene RIKEN cDNA 1200015M12 gene
Tssr154168 19 3134204 to 3134205 1 + TSS region transcription start site region 154168
Gm25431 19 3136984 to 3137090 106 - snRNA gene predicted gene, 25431
Gm42068 19 3146684 to 3157399 10715 + pseudogene predicted gene, 42068
1700030N03Rik 19 3153799 to 3197703 43904 - lincRNA gene RIKEN cDNA 1700030N03 gene
Cpgi10361 19 3205542 to 3205999 457 CpG island CpG island 10361
Tssr154169 19 3205578 to 3205593 15 + TSS region transcription start site region 154169
Tssr154170 19 3205595 to 3205622 27 + TSS region transcription start site region 154170
Tssr154171 19 3205632 to 3205641 9 + TSS region transcription start site region 154171
Tssr154172 19 3205831 to 3205862 31 + TSS region transcription start site region 154172
Tssr154173 19 3205909 to 3205915 6 + TSS region transcription start site region 154173
Gm7798 19 3248804 to 3250214 1410 + pseudogene predicted gene 7798
Gm2106 19 3253518 to 3255067 1549 - pseudogene predicted gene 2106
Ighmbp2 19 3260924 to 3283017 22093 - protein coding gene immunoglobulin mu binding protein 2
Lfp3 19 3278551 to 3278703 152 QTL long free running period 3
D19Mit32 19 3278551 to 3278703 152 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 32
Cpgi10362 19 3282485 to 3283360 875 CpG island CpG island 10362
Tssr157382 19 3282801 to 3282853 52 - TSS region transcription start site region 157382
Mrpl21 19 3282920 to 3292837 9917 + protein coding gene mitochondrial ribosomal protein L21
Tssr157383 19 3282958 to 3283048 90 - TSS region transcription start site region 157383
Tssr154174 19 3283035 to 3283071 36 + TSS region transcription start site region 154174
Mir6984 19 3288920 to 3288983 63 + miRNA gene microRNA 6984
Tssr154175 19 3322292 to 3322315 23 + TSS region transcription start site region 154175
Cpgi10363 19 3322484 to 3322816 332 CpG island CpG island 10363
Cpgi10364 19 3322884 to 3324237 1353 CpG island CpG island 10364
Cpt1a 19 3323301 to 3385732 62431 + protein coding gene carnitine palmitoyltransferase 1a, liver
Tssr154176 19 3323327 to 3323339 12 + TSS region transcription start site region 154176
Tssr154177 19 3323340 to 3323353 13 + TSS region transcription start site region 154177
Tssr157384 19 3323720 to 3323721 1 - TSS region transcription start site region 157384
Cpgi10365 19 3324931 to 3325851 920 CpG island CpG island 10365
Tssr154178 19 3325686 to 3325690 4 + TSS region transcription start site region 154178
Tssr154179 19 3352500 to 3352516 16 + TSS region transcription start site region 154179
Gm36532 19 3373448 to 3378102 4654 - lncRNA gene predicted gene, 36532
Tssr154180 19 3376383 to 3376420 37 + TSS region transcription start site region 154180
Tssr154181 19 3377581 to 3377620 39 + TSS region transcription start site region 154181
Tssr5398 19 3377631 to 3377641 10 + TSS region transcription start site region 5398
Tssr154182 19 3384678 to 3384682 4 + TSS region transcription start site region 154182
4833417J20Rik 19 3386210 to 3387995 1785 unclassified gene RIKEN cDNA 4833417J20 gene
Cpgi10366 19 3388563 to 3389698 1135 CpG island CpG island 10366
Tssr157385 19 3388643 to 3388650 7 - TSS region transcription start site region 157385
Tssr157386 19 3388652 to 3388665 13 - TSS region transcription start site region 157386
Tesmin 19 3388857 to 3407823 18966 + protein coding gene testis expressed metallothionein like
Tssr154183 19 3388861 to 3388904 43 + TSS region transcription start site region 154183
Tssr154184 19 3388922 to 3388931 9 + TSS region transcription start site region 154184
Tssr157387 19 3389188 to 3389244 56 - TSS region transcription start site region 157387
Gal 19 3409917 to 3414457 4540 - protein coding gene galanin
Cpgi10367 19 3413954 to 3414827 873 CpG island CpG island 10367
Tssr157388 19 3414464 to 3414481 17 - TSS region transcription start site region 157388
Tssr157389 19 3440890 to 3440907 17 - TSS region transcription start site region 157389
Tssr157390 19 3441265 to 3441276 11 - TSS region transcription start site region 157390
Tssr157391 19 3441286 to 3441304 18 - TSS region transcription start site region 157391
Ppp6r3 19 3454928 to 3575749 120821 - protein coding gene protein phosphatase 6, regulatory subunit 3
Gm48696 19 3486090 to 3488014 1924 + unclassified non-coding RNA gene predicted gene, 48696
Gm23940 19 3490309 to 3490413 104 + snRNA gene predicted gene, 23940
Tssr157392 19 3510893 to 3510897 4 - TSS region transcription start site region 157392
Tssr157393 19 3521798 to 3521819 21 - TSS region transcription start site region 157393
Gm48683 19 3527104 to 3528613 1509 + antisense lncRNA gene predicted gene, 48683
Tssr157394 19 3533417 to 3533427 10 - TSS region transcription start site region 157394
Tssr157395 19 3549423 to 3549427 4 - TSS region transcription start site region 157395
Tssr157396 19 3554893 to 3554896 3 - TSS region transcription start site region 157396
Gm19205 19 3567551 to 3568448 897 + pseudogene predicted gene, 19205
Tssr5399 19 3570684 to 3570685 1 + TSS region transcription start site region 5399
Cpgi10368 19 3575091 to 3576347 1256 CpG island CpG island 10368
Tssr157397 19 3575702 to 3575705 3 - TSS region transcription start site region 157397
Tssr157398 19 3575708 to 3575756 48 - TSS region transcription start site region 157398
n-TAagc9 19 3576263 to 3576335 72 + tRNA gene nuclear encoded tRNA alanine 9 (anticodon AGC)
Lrp5 19 3584828 to 3686564 101736 - protein coding gene low density lipoprotein receptor-related protein 5
Drinksac2 19 3645155 to 3645286 131 QTL drink saccharin 2
D19Mit68 19 3645155 to 3645286 131 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 68
Tssr157399 19 3651906 to 3651930 24 - TSS region transcription start site region 157399
Tssr154185 19 3652038 to 3652045 7 + TSS region transcription start site region 154185
Cpgi10369 19 3685766 to 3687301 1535 CpG island CpG island 10369
Gm36672 19 3686410 to 3692435 6025 + protein coding gene predicted gene, 36672
Tssr5400 19 3686499 to 3686506 7 - TSS region transcription start site region 5400
Tssr157400 19 3686523 to 3686547 24 - TSS region transcription start site region 157400
Tssr157401 19 3686549 to 3686586 37 - TSS region transcription start site region 157401
Gm36608 19 3689236 to 3708226 18990 - lncRNA gene predicted gene, 36608
Cpgi10370 19 3707998 to 3708917 919 CpG island CpG island 10370
Tssr154186 19 3708287 to 3708395 108 + TSS region transcription start site region 154186
1810055G02Rik 19 3708333 to 3717881 9548 + protein coding gene RIKEN cDNA 1810055G02 gene
Gm36787 19 3712777 to 3744426 31649 - protein coding gene predicted gene, 36787
Cpgi10371 19 3719243 to 3719772 529 CpG island CpG island 10371
Gm36871 19 3719885 to 3721369 1484 + lncRNA gene predicted gene, 36871
Gm2141 19 3730432 to 3731047 615 - pseudogene predicted gene 2141
Tssr157402 19 3744374 to 3744392 18 - TSS region transcription start site region 157402
Cpgi10372 19 3767246 to 3769272 2026 CpG island CpG island 10372
Tssr154187 19 3767361 to 3767384 23 + TSS region transcription start site region 154187
Tssr154188 19 3767397 to 3767425 28 + TSS region transcription start site region 154188
Kmt5b 19 3767421 to 3818303 50882 + protein coding gene lysine methyltransferase 5B
Tssr154189 19 3767867 to 3767921 54 + TSS region transcription start site region 154189
Tssr154190 19 3767953 to 3767970 17 + TSS region transcription start site region 154190
Tssr154191 19 3768112 to 3768207 95 + TSS region transcription start site region 154191
Tssr157403 19 3768694 to 3768709 15 - TSS region transcription start site region 157403
Tssr154192 19 3769104 to 3769112 8 + TSS region transcription start site region 154192
Tssr154193 19 3787367 to 3787373 6 + TSS region transcription start site region 154193
Gm16066 19 3798615 to 3852419 53804 - unclassified non-coding RNA gene predicted gene 16066
Gm19209 19 3821562 to 3822385 823 - pseudogene predicted gene, 19209
Cpgi10373 19 3851047 to 3852700 1653 CpG island CpG island 10373
Chka 19 3851773 to 3894369 42596 + protein coding gene choline kinase alpha
Tssr154194 19 3851800 to 3851811 11 + TSS region transcription start site region 154194
Tssr154195 19 3851823 to 3851840 17 + TSS region transcription start site region 154195
Tssr154196 19 3851855 to 3851860 5 + TSS region transcription start site region 154196
Tssr154197 19 3851927 to 3851934 7 + TSS region transcription start site region 154197
Tssr154198 19 3851939 to 3851948 9 + TSS region transcription start site region 154198
Tssr154199 19 3851957 to 3851962 5 + TSS region transcription start site region 154199
Tssr154200 19 3851972 to 3851981 9 + TSS region transcription start site region 154200
Tgct2 19 20562299 to 3278551 -17283748 QTL testicular germ cell tumor 2