Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:26723698-28094825

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smarca2 19 26605088 to 26778321 173233 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
D19Mit99 19 26731425 to 26731520 95 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 99
Cpgi10721 19 26747756 to 26748070 314 CpG island CpG island 10721
Tssr155720 19 26748390 to 26748474 84 + TSS region transcription start site region 155720
Tssr155721 19 26749838 to 26749877 39 + TSS region transcription start site region 155721
Tssr155722 19 26749883 to 26749918 35 + TSS region transcription start site region 155722
Tssr155723 19 26750954 to 26750967 13 + TSS region transcription start site region 155723
Tssr155724 19 26753588 to 26753603 15 + TSS region transcription start site region 155724
Tssr155725 19 26753652 to 26753662 10 + TSS region transcription start site region 155725
4931403E22Rik 19 26768801 to 26823907 55106 - lncRNA gene RIKEN cDNA 4931403E22 gene
Tssr155726 19 26770926 to 26770956 30 + TSS region transcription start site region 155726
Tssr155727 19 26781757 to 26781760 3 + TSS region transcription start site region 155727
Gm18380 19 26802040 to 26803219 1179 + pseudogene predicted gene, 18380
Pgia23 19 26810053 to 26810202 149 QTL proteoglycan induced arthritis 23
D19Mit30 19 26810053 to 26810202 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 30
Gm46648 19 26823866 to 26872509 48643 + lncRNA gene predicted gene, 46648
Gm815 19 26885925 to 26888639 2714 + protein coding gene predicted gene 815
D19Dcr6 19 26987131 to 26987238 107 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 6
D19Mit131 19 26991258 to 26991371 113 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 131
Cpgi10722 19 27009804 to 27009963 159 CpG island CpG island 10722
Tssr155728 19 27019765 to 27019769 4 + TSS region transcription start site region 155728
Gm35438 19 27101951 to 27316698 214747 - lncRNA gene predicted gene, 35438
D19Dcr7 19 27202598 to 27202698 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 7
Vldlr 19 27216489 to 27254231 37742 + protein coding gene very low density lipoprotein receptor
Cpgi10723 19 27216616 to 27219235 2619 CpG island CpG island 10723
Tssr155729 19 27216881 to 27216891 10 + TSS region transcription start site region 155729
Tssr155730 19 27217011 to 27217042 31 + TSS region transcription start site region 155730
Tssr155731 19 27217047 to 27217056 9 + TSS region transcription start site region 155731
Tssr5469 19 27217069 to 27217077 8 + TSS region transcription start site region 5469
Tssr155732 19 27217101 to 27217131 30 + TSS region transcription start site region 155732
Tssr155733 19 27217406 to 27217424 18 + TSS region transcription start site region 155733
Tssr155734 19 27217509 to 27217605 96 + TSS region transcription start site region 155734
Tssr158703 19 27257415 to 27257418 3 - TSS region transcription start site region 158703
Tssr158704 19 27262264 to 27262273 9 - TSS region transcription start site region 158704
Tssr158705 19 27262297 to 27262306 9 - TSS region transcription start site region 158705
Tssr158706 19 27262317 to 27262328 11 - TSS region transcription start site region 158706
Gm35268 19 27312632 to 27321729 9097 + lncRNA gene predicted gene, 35268
Tssr155735 19 27312894 to 27312904 10 + TSS region transcription start site region 155735
Tssr155736 19 27312970 to 27312975 5 + TSS region transcription start site region 155736
Tssr155737 19 27321759 to 27321763 4 + TSS region transcription start site region 155737
Tssr155738 19 27322518 to 27322532 14 + TSS region transcription start site region 155738
Tssr155739 19 27322539 to 27322592 53 + TSS region transcription start site region 155739
Kcnv2 19 27322588 to 27337179 14591 + protein coding gene potassium channel, subfamily V, member 2
Tssr5470 19 27322600 to 27322601 1 + TSS region transcription start site region 5470
Tssr155740 19 27322609 to 27322617 8 + TSS region transcription start site region 155740
Cpgi10724 19 27323005 to 27324113 1108 CpG island CpG island 10724
Tssr155741 19 27335528 to 27335534 6 + TSS region transcription start site region 155741
Gm35554 19 27344725 to 27356409 11684 + lncRNA gene predicted gene, 35554
Tssr155742 19 27344738 to 27344768 30 + TSS region transcription start site region 155742
Tssr155743 19 27344769 to 27344782 13 + TSS region transcription start site region 155743
Pum3 19 27388702 to 27429820 41118 - protein coding gene pumilio RNA-binding family member 3
Tssr158707 19 27399084 to 27399094 10 - TSS region transcription start site region 158707
Tssr158708 19 27421381 to 27421427 46 - TSS region transcription start site region 158708
Tssr155744 19 27428838 to 27428846 8 + TSS region transcription start site region 155744
Cpgi10725 19 27429455 to 27430326 871 CpG island CpG island 10725
Tssr158709 19 27429807 to 27429870 63 - TSS region transcription start site region 158709
C030016D13Rik 19 27430037 to 27432631 2594 + lncRNA gene RIKEN cDNA C030016D13 gene
Tssr155745 19 27430136 to 27430161 25 + TSS region transcription start site region 155745
Mcsq3 19 27566000 to 31134000 3568000 QTL methacholine sensitivity QTL 3, final
Gm35697 19 27666428 to 27668494 2066 - lncRNA gene predicted gene, 35697
Gm24782 19 27703876 to 27704007 131 - snoRNA gene predicted gene, 24782
Rfx3 19 27761721 to 28011166 249445 - protein coding gene regulatory factor X, 3 (influences HLA class II expression)
Tssr158710 19 27762337 to 27762357 20 - TSS region transcription start site region 158710
D19Mit132 19 27794585 to 27794702 117 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 132
Tgct4 19 27794585 to 35317981 7523396 QTL testicular germ cell tumor 4
Gm8412 19 27858058 to 27858497 439 + pseudogene predicted gene 8412
Tssr155746 19 27906334 to 27906338 4 + TSS region transcription start site region 155746
Gm17894 19 27961274 to 27962110 836 + pseudogene predicted gene, 17894
Gm20407 19 27994197 to 27995693 1496 + unclassified non-coding RNA gene predicted gene 20407
Tssr158711 19 28009774 to 28009782 8 - TSS region transcription start site region 158711
Tssr158712 19 28009893 to 28009906 13 - TSS region transcription start site region 158712
Tssr158713 19 28010018 to 28010028 10 - TSS region transcription start site region 158713
Cpgi10726 19 28010402 to 28012332 1930 CpG island CpG island 10726
Tssr158714 19 28010995 to 28011054 59 - TSS region transcription start site region 158714
Tssr158715 19 28011082 to 28011089 7 - TSS region transcription start site region 158715
Tssr158716 19 28011096 to 28011132 36 - TSS region transcription start site region 158716
Tssr158717 19 28011138 to 28011181 43 - TSS region transcription start site region 158717
Tssr158718 19 28011186 to 28011221 35 - TSS region transcription start site region 158718
Tssr158719 19 28011507 to 28011538 31 - TSS region transcription start site region 158719
Tssr158720 19 28011555 to 28011590 35 - TSS region transcription start site region 158720
Tssr158721 19 28011594 to 28011634 40 - TSS region transcription start site region 158721
Tssr155747 19 28011740 to 28011750 10 + TSS region transcription start site region 155747
D19Dcr8 19 28015128 to 28015223 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 8
D19Mit47 19 28015954 to 28016099 145 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 47
Gm5517 19 28033455 to 28034153 698 + pseudogene predicted gene 5517
Gm28228 19 28088856 to 28089764 908 + lincRNA gene predicted gene 28228