Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:25463702-29354820

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294 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10706 19 25493763 to 25494177 414 CpG island CpG island 10706
Gm5249 19 25493833 to 25496716 2883 + pseudogene predicted gene 5249
Cpgi10707 19 25505232 to 25507026 1794 CpG island CpG island 10707
Dmrt1 19 25505618 to 25604328 98710 + protein coding gene doublesex and mab-3 related transcription factor 1
Tssr155690 19 25505620 to 25505673 53 + TSS region transcription start site region 155690
Tssr155691 19 25505736 to 25505771 35 + TSS region transcription start site region 155691
Tssr155692 19 25505775 to 25505780 5 + TSS region transcription start site region 155692
Tssr155693 19 25505782 to 25505815 33 + TSS region transcription start site region 155693
Tssr155694 19 25505833 to 25505845 12 + TSS region transcription start site region 155694
Tssr155695 19 25505863 to 25505874 11 + TSS region transcription start site region 155695
Tssr155696 19 25552072 to 25552118 46 + TSS region transcription start site region 155696
Tssr155697 19 25599495 to 25599496 1 + TSS region transcription start site region 155697
Tssr155698 19 25603190 to 25603195 5 + TSS region transcription start site region 155698
Cpgi10708 19 25604663 to 25605145 482 CpG island CpG island 10708
Cpgi10709 19 25605631 to 25606457 826 CpG island CpG island 10709
Cpgi10710 19 25607581 to 25607767 186 CpG island CpG island 10710
Cpgi10711 19 25609068 to 25609460 392 CpG island CpG island 10711
Cpgi10712 19 25609959 to 25611706 1747 CpG island CpG island 10712
Tssr155699 19 25610256 to 25610261 5 + TSS region transcription start site region 155699
Tssr155700 19 25610533 to 25610553 20 + TSS region transcription start site region 155700
Dmrt3 19 25610537 to 25623920 13383 + protein coding gene doublesex and mab-3 related transcription factor 3
Tssr155701 19 25610564 to 25610576 12 + TSS region transcription start site region 155701
Tssr155702 19 25610923 to 25610947 24 + TSS region transcription start site region 155702
Cpgi10713 19 25622292 to 25623167 875 CpG island CpG island 10713
Cpgi10714 19 25635877 to 25636139 262 CpG island CpG island 10714
Cpgi10715 19 25666022 to 25666251 229 CpG island CpG island 10715
2610016A17Rik 19 25671134 to 25672239 1105 - lincRNA gene RIKEN cDNA 2610016A17 gene
Cpgi10716 19 25672021 to 25672814 793 CpG island CpG island 10716
Tssr158697 19 25672227 to 25672240 13 - TSS region transcription start site region 158697
Tssr158698 19 25672247 to 25672258 11 - TSS region transcription start site region 158698
Tssr155703 19 25672408 to 25672420 12 + TSS region transcription start site region 155703
Dmrt2 19 25672420 to 25679010 6590 + protein coding gene doublesex and mab-3 related transcription factor 2
Cpgi10717 19 25673200 to 25674683 1483 CpG island CpG island 10717
Tssr155704 19 25675217 to 25675220 3 + TSS region transcription start site region 155704
Gm34516 19 25775487 to 25946975 171488 + lncRNA gene predicted gene, 34516
Gm8825 19 25795810 to 25796807 997 - pseudogene predicted gene 8825
1700048O14Rik 19 26030730 to 26046626 15896 - lncRNA gene RIKEN cDNA 1700048O14 gene
Tssr158699 19 26046441 to 26046452 11 - TSS region transcription start site region 158699
Tssr158700 19 26046461 to 26046469 8 - TSS region transcription start site region 158700
Gm25176 19 26260369 to 26260493 124 - snRNA gene predicted gene, 25176
Tssr158701 19 26260490 to 26260495 5 - TSS region transcription start site region 158701
Iba4 19 26328315 to 26328421 106 QTL induction of brown adipocytes 4
dblr 19 26328315 to 37257062 10928747 heritable phenotypic marker doubleridge
D19Mit86 19 26328315 to 26328421 106 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 86
Gm34808 19 26482315 to 26509084 26769 - lncRNA gene predicted gene, 34808
Gm41828 19 26510339 to 26527796 17457 + lncRNA gene predicted gene, 41828
Gm48775 19 26572996 to 26584672 11676 + lincRNA gene predicted gene, 48775
Cpgi10718 19 26604475 to 26605613 1138 CpG island CpG island 10718
Smarca2 19 26605088 to 26778321 173233 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Tssr155705 19 26605106 to 26605117 11 + TSS region transcription start site region 155705
Tssr155706 19 26605125 to 26605156 31 + TSS region transcription start site region 155706
Tssr155707 19 26605164 to 26605185 21 + TSS region transcription start site region 155707
Tssr155708 19 26605191 to 26605196 5 + TSS region transcription start site region 155708
Cpgi10719 19 26605742 to 26608099 2357 CpG island CpG island 10719
Tssr155709 19 26606433 to 26606457 24 + TSS region transcription start site region 155709
Tssr155710 19 26606611 to 26606639 28 + TSS region transcription start site region 155710
Tssr155711 19 26606736 to 26606809 73 + TSS region transcription start site region 155711
Tssr155712 19 26607182 to 26607226 44 + TSS region transcription start site region 155712
Tssr155713 19 26607231 to 26607256 25 + TSS region transcription start site region 155713
Tssr155714 19 26607375 to 26607410 35 + TSS region transcription start site region 155714
Tssr155715 19 26607439 to 26607497 58 + TSS region transcription start site region 155715
Gm20616 19 26620822 to 26623419 2597 - lncRNA gene predicted gene 20616
Tssr155716 19 26621983 to 26621987 4 + TSS region transcription start site region 155716
Tssr158702 19 26623394 to 26623431 37 - TSS region transcription start site region 158702
Tssr155717 19 26623401 to 26623418 17 + TSS region transcription start site region 155717
Tssr155718 19 26623419 to 26623471 52 + TSS region transcription start site region 155718
Tssr155719 19 26623941 to 26623960 19 + TSS region transcription start site region 155719
Cpgi10720 19 26640442 to 26640604 162 CpG island CpG island 10720
D19Mit99 19 26731425 to 26731520 95 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 99
Cpgi10721 19 26747756 to 26748070 314 CpG island CpG island 10721
Tssr155720 19 26748390 to 26748474 84 + TSS region transcription start site region 155720
Tssr155721 19 26749838 to 26749877 39 + TSS region transcription start site region 155721
Tssr155722 19 26749883 to 26749918 35 + TSS region transcription start site region 155722
Tssr155723 19 26750954 to 26750967 13 + TSS region transcription start site region 155723
Tssr155724 19 26753588 to 26753603 15 + TSS region transcription start site region 155724
Tssr155725 19 26753652 to 26753662 10 + TSS region transcription start site region 155725
4931403E22Rik 19 26768801 to 26823907 55106 - lncRNA gene RIKEN cDNA 4931403E22 gene
Tssr155726 19 26770926 to 26770956 30 + TSS region transcription start site region 155726
Tssr155727 19 26781757 to 26781760 3 + TSS region transcription start site region 155727
Gm18380 19 26802040 to 26803219 1179 + pseudogene predicted gene, 18380
Pgia23 19 26810053 to 26810202 149 QTL proteoglycan induced arthritis 23
D19Mit30 19 26810053 to 26810202 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 30
Gm46648 19 26823866 to 26872509 48643 + lncRNA gene predicted gene, 46648
Gm815 19 26885925 to 26888639 2714 + protein coding gene predicted gene 815
D19Dcr6 19 26987131 to 26987238 107 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 6
D19Mit131 19 26991258 to 26991371 113 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 131
Cpgi10722 19 27009804 to 27009963 159 CpG island CpG island 10722
Tssr155728 19 27019765 to 27019769 4 + TSS region transcription start site region 155728
Gm35438 19 27101951 to 27316698 214747 - lncRNA gene predicted gene, 35438
D19Dcr7 19 27202598 to 27202698 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 7
Vldlr 19 27216489 to 27254231 37742 + protein coding gene very low density lipoprotein receptor
Cpgi10723 19 27216616 to 27219235 2619 CpG island CpG island 10723
Tssr155729 19 27216881 to 27216891 10 + TSS region transcription start site region 155729
Tssr155730 19 27217011 to 27217042 31 + TSS region transcription start site region 155730
Tssr155731 19 27217047 to 27217056 9 + TSS region transcription start site region 155731
Tssr5469 19 27217069 to 27217077 8 + TSS region transcription start site region 5469
Tssr155732 19 27217101 to 27217131 30 + TSS region transcription start site region 155732
Tssr155733 19 27217406 to 27217424 18 + TSS region transcription start site region 155733
Tssr155734 19 27217509 to 27217605 96 + TSS region transcription start site region 155734
Tssr158703 19 27257415 to 27257418 3 - TSS region transcription start site region 158703
Tssr158704 19 27262264 to 27262273 9 - TSS region transcription start site region 158704
Tssr158705 19 27262297 to 27262306 9 - TSS region transcription start site region 158705
Tssr158706 19 27262317 to 27262328 11 - TSS region transcription start site region 158706
Gm35268 19 27312632 to 27321729 9097 + lncRNA gene predicted gene, 35268
Tssr155735 19 27312894 to 27312904 10 + TSS region transcription start site region 155735
Tssr155736 19 27312970 to 27312975 5 + TSS region transcription start site region 155736
Tssr155737 19 27321759 to 27321763 4 + TSS region transcription start site region 155737
Tssr155738 19 27322518 to 27322532 14 + TSS region transcription start site region 155738
Tssr155739 19 27322539 to 27322592 53 + TSS region transcription start site region 155739
Kcnv2 19 27322588 to 27337179 14591 + protein coding gene potassium channel, subfamily V, member 2
Tssr5470 19 27322600 to 27322601 1 + TSS region transcription start site region 5470
Tssr155740 19 27322609 to 27322617 8 + TSS region transcription start site region 155740
Cpgi10724 19 27323005 to 27324113 1108 CpG island CpG island 10724
Tssr155741 19 27335528 to 27335534 6 + TSS region transcription start site region 155741
Gm35554 19 27344725 to 27356409 11684 + lncRNA gene predicted gene, 35554
Tssr155742 19 27344738 to 27344768 30 + TSS region transcription start site region 155742
Tssr155743 19 27344769 to 27344782 13 + TSS region transcription start site region 155743
Pum3 19 27388702 to 27429820 41118 - protein coding gene pumilio RNA-binding family member 3
Tssr158707 19 27399084 to 27399094 10 - TSS region transcription start site region 158707
Tssr158708 19 27421381 to 27421427 46 - TSS region transcription start site region 158708
Tssr155744 19 27428838 to 27428846 8 + TSS region transcription start site region 155744
Cpgi10725 19 27429455 to 27430326 871 CpG island CpG island 10725
Tssr158709 19 27429807 to 27429870 63 - TSS region transcription start site region 158709
C030016D13Rik 19 27430037 to 27432631 2594 + lncRNA gene RIKEN cDNA C030016D13 gene
Tssr155745 19 27430136 to 27430161 25 + TSS region transcription start site region 155745
Mcsq3 19 27566000 to 31134000 3568000 QTL methacholine sensitivity QTL 3, final
Gm35697 19 27666428 to 27668494 2066 - lncRNA gene predicted gene, 35697
Gm24782 19 27703876 to 27704007 131 - snoRNA gene predicted gene, 24782
Rfx3 19 27761721 to 28011166 249445 - protein coding gene regulatory factor X, 3 (influences HLA class II expression)
Tssr158710 19 27762337 to 27762357 20 - TSS region transcription start site region 158710
Tgct4 19 27794585 to 35317981 7523396 QTL testicular germ cell tumor 4
D19Mit132 19 27794585 to 27794702 117 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 132
Gm8412 19 27858058 to 27858497 439 + pseudogene predicted gene 8412
Tssr155746 19 27906334 to 27906338 4 + TSS region transcription start site region 155746
Gm17894 19 27961274 to 27962110 836 + pseudogene predicted gene, 17894
Gm20407 19 27994197 to 27995693 1496 + unclassified non-coding RNA gene predicted gene 20407
Tssr158711 19 28009774 to 28009782 8 - TSS region transcription start site region 158711
Tssr158712 19 28009893 to 28009906 13 - TSS region transcription start site region 158712
Tssr158713 19 28010018 to 28010028 10 - TSS region transcription start site region 158713
Cpgi10726 19 28010402 to 28012332 1930 CpG island CpG island 10726
Tssr158714 19 28010995 to 28011054 59 - TSS region transcription start site region 158714
Tssr158715 19 28011082 to 28011089 7 - TSS region transcription start site region 158715
Tssr158716 19 28011096 to 28011132 36 - TSS region transcription start site region 158716
Tssr158717 19 28011138 to 28011181 43 - TSS region transcription start site region 158717
Tssr158718 19 28011186 to 28011221 35 - TSS region transcription start site region 158718
Tssr158719 19 28011507 to 28011538 31 - TSS region transcription start site region 158719
Tssr158720 19 28011555 to 28011590 35 - TSS region transcription start site region 158720
Tssr158721 19 28011594 to 28011634 40 - TSS region transcription start site region 158721
Tssr155747 19 28011740 to 28011750 10 + TSS region transcription start site region 155747
D19Dcr8 19 28015128 to 28015223 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 8
D19Mit47 19 28015954 to 28016099 145 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 47
Gm5517 19 28033455 to 28034153 698 + pseudogene predicted gene 5517
Gm28228 19 28088856 to 28089764 908 + lincRNA gene predicted gene 28228
Gm35781 19 28145864 to 28146319 455 - pseudogene predicted gene, 35781
Tssr158722 19 28146350 to 28146351 1 - TSS region transcription start site region 158722
Glis3 19 28258851 to 28680077 421226 - protein coding gene GLIS family zinc finger 3
D19Dcr9 19 28268420 to 28268516 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 9
Tssr158723 19 28283861 to 28283882 21 - TSS region transcription start site region 158723
Tssr158724 19 28283883 to 28283914 31 - TSS region transcription start site region 158724
Gm35866 19 28362542 to 28365815 3273 - lncRNA gene predicted gene, 35866
Tssr5471 19 28402405 to 28402409 4 + TSS region transcription start site region 5471
Tssr158725 19 28486291 to 28486294 3 - TSS region transcription start site region 158725
D19Mit98 19 28493507 to 28493628 121 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 98
D19Dcr10 19 28555884 to 28555979 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 10
Tssr158726 19 28560975 to 28560987 12 - TSS region transcription start site region 158726
Tssr158727 19 28561017 to 28561025 8 - TSS region transcription start site region 158727
Tssr158728 19 28561066 to 28561083 17 - TSS region transcription start site region 158728
Tssr155748 19 28578188 to 28578202 14 + TSS region transcription start site region 155748
4933413C19Rik 19 28580533 to 28583294 2761 - sense intronic lncRNA gene RIKEN cDNA 4933413C19 gene
Cpgi10727 19 28678088 to 28678510 422 CpG island CpG island 10727
D930032P07Rik 19 28678224 to 28720027 41803 + lincRNA gene RIKEN cDNA D930032P07 gene
Cpgi10728 19 28678785 to 28680407 1622 CpG island CpG island 10728
Tssr158729 19 28680110 to 28680122 12 - TSS region transcription start site region 158729
Tssr158730 19 28680132 to 28680143 11 - TSS region transcription start site region 158730
Tssr158731 19 28680165 to 28680183 18 - TSS region transcription start site region 158731
Tssr158732 19 28680202 to 28680267 65 - TSS region transcription start site region 158732
D19Dcr11 19 28691324 to 28691419 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 11
Rps15a-ps2 19 28742159 to 28742551 392 - pseudogene ribosomal protein S15A, pseudogene 2
Tssr158733 19 28742578 to 28742588 10 - TSS region transcription start site region 158733
Gm35922 19 28760033 to 28788185 28152 + lncRNA gene predicted gene, 35922
Gm6788 19 28763161 to 28763430 269 - pseudogene predicted gene 6788
Tssr158734 19 28763537 to 28763540 3 - TSS region transcription start site region 158734
Gm26942 19 28812406 to 28813202 796 - pseudogene predicted gene, 26942
Cpgi10729 19 28834608 to 28835796 1188 CpG island CpG island 10729
Tssr155749 19 28835101 to 28835116 15 + TSS region transcription start site region 155749
Tssr155750 19 28835124 to 28835142 18 + TSS region transcription start site region 155750
Slc1a1 19 28835166 to 28913960 78794 + protein coding gene solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
Gm5822 19 28862330 to 28863707 1377 - pseudogene predicted gene 5822
Tssr158735 19 28863766 to 28863767 1 - TSS region transcription start site region 158735
Tssr155751 19 28893040 to 28893043 3 + TSS region transcription start site region 155751
4430402I18Rik 19 28906829 to 28968356 61527 - protein coding gene RIKEN cDNA 4430402I18 gene
Tssr158736 19 28929126 to 28929131 5 - TSS region transcription start site region 158736
Tssr158737 19 28929223 to 28929237 14 - TSS region transcription start site region 158737
D19Dcr12 19 28955176 to 28955274 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 12
Cpgi10730 19 28963638 to 28964931 1293 CpG island CpG island 10730
Tssr155752 19 28963851 to 28963877 26 + TSS region transcription start site region 155752
Tssr158738 19 28963863 to 28963893 30 - TSS region transcription start site region 158738
Tssr155753 19 28963892 to 28963969 77 + TSS region transcription start site region 155753
Plpp6 19 28963953 to 28966811 2858 + protein coding gene phospholipid phosphatase 6
Tssr158739 19 28967794 to 28967852 58 - TSS region transcription start site region 158739