Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:25396441-26696452

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kank1 19 25236975 to 25434496 197521 + protein coding gene KN motif and ankyrin repeat domains 1
Tssr155683 19 25406661 to 25406692 31 + TSS region transcription start site region 155683
Tssr155684 19 25406765 to 25406778 13 + TSS region transcription start site region 155684
Cpgi10704 19 25406778 to 25407114 336 CpG island CpG island 10704
Tssr155685 19 25406936 to 25407002 66 + TSS region transcription start site region 155685
Tssr155686 19 25407017 to 25407028 11 + TSS region transcription start site region 155686
Tssr5468 19 25407046 to 25407073 27 + TSS region transcription start site region 5468
Tssr155687 19 25407077 to 25407088 11 + TSS region transcription start site region 155687
Tssr155688 19 25407094 to 25407108 14 + TSS region transcription start site region 155688
Cpgi10705 19 25410089 to 25410275 186 CpG island CpG island 10705
Tssr155689 19 25423902 to 25423905 3 + TSS region transcription start site region 155689
Gm26207 19 25453960 to 25454063 103 - snRNA gene predicted gene, 26207
Cpgi10706 19 25493763 to 25494177 414 CpG island CpG island 10706
Gm5249 19 25493833 to 25496716 2883 + pseudogene predicted gene 5249
Cpgi10707 19 25505232 to 25507026 1794 CpG island CpG island 10707
Dmrt1 19 25505618 to 25604328 98710 + protein coding gene doublesex and mab-3 related transcription factor 1
Tssr155690 19 25505620 to 25505673 53 + TSS region transcription start site region 155690
Tssr155691 19 25505736 to 25505771 35 + TSS region transcription start site region 155691
Tssr155692 19 25505775 to 25505780 5 + TSS region transcription start site region 155692
Tssr155693 19 25505782 to 25505815 33 + TSS region transcription start site region 155693
Tssr155694 19 25505833 to 25505845 12 + TSS region transcription start site region 155694
Tssr155695 19 25505863 to 25505874 11 + TSS region transcription start site region 155695
Tssr155696 19 25552072 to 25552118 46 + TSS region transcription start site region 155696
Tssr155697 19 25599495 to 25599496 1 + TSS region transcription start site region 155697
Tssr155698 19 25603190 to 25603195 5 + TSS region transcription start site region 155698
Cpgi10708 19 25604663 to 25605145 482 CpG island CpG island 10708
Cpgi10709 19 25605631 to 25606457 826 CpG island CpG island 10709
Cpgi10710 19 25607581 to 25607767 186 CpG island CpG island 10710
Cpgi10711 19 25609068 to 25609460 392 CpG island CpG island 10711
Cpgi10712 19 25609959 to 25611706 1747 CpG island CpG island 10712
Tssr155699 19 25610256 to 25610261 5 + TSS region transcription start site region 155699
Tssr155700 19 25610533 to 25610553 20 + TSS region transcription start site region 155700
Dmrt3 19 25610537 to 25623920 13383 + protein coding gene doublesex and mab-3 related transcription factor 3
Tssr155701 19 25610564 to 25610576 12 + TSS region transcription start site region 155701
Tssr155702 19 25610923 to 25610947 24 + TSS region transcription start site region 155702
Cpgi10713 19 25622292 to 25623167 875 CpG island CpG island 10713
Cpgi10714 19 25635877 to 25636139 262 CpG island CpG island 10714
Cpgi10715 19 25666022 to 25666251 229 CpG island CpG island 10715
2610016A17Rik 19 25671134 to 25672239 1105 - lincRNA gene RIKEN cDNA 2610016A17 gene
Cpgi10716 19 25672021 to 25672814 793 CpG island CpG island 10716
Tssr158697 19 25672227 to 25672240 13 - TSS region transcription start site region 158697
Tssr158698 19 25672247 to 25672258 11 - TSS region transcription start site region 158698
Tssr155703 19 25672408 to 25672420 12 + TSS region transcription start site region 155703
Dmrt2 19 25672420 to 25679010 6590 + protein coding gene doublesex and mab-3 related transcription factor 2
Cpgi10717 19 25673200 to 25674683 1483 CpG island CpG island 10717
Tssr155704 19 25675217 to 25675220 3 + TSS region transcription start site region 155704
Gm34516 19 25775487 to 25946975 171488 + lncRNA gene predicted gene, 34516
Gm8825 19 25795810 to 25796807 997 - pseudogene predicted gene 8825
1700048O14Rik 19 26030730 to 26046626 15896 - lncRNA gene RIKEN cDNA 1700048O14 gene
Tssr158699 19 26046441 to 26046452 11 - TSS region transcription start site region 158699
Tssr158700 19 26046461 to 26046469 8 - TSS region transcription start site region 158700
Gm25176 19 26260369 to 26260493 124 - snRNA gene predicted gene, 25176
Tssr158701 19 26260490 to 26260495 5 - TSS region transcription start site region 158701
Iba4 19 26328315 to 26328421 106 QTL induction of brown adipocytes 4
dblr 19 26328315 to 37257062 10928747 heritable phenotypic marker doubleridge
D19Mit86 19 26328315 to 26328421 106 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 86
Gm34808 19 26482315 to 26509084 26769 - lncRNA gene predicted gene, 34808
Gm41828 19 26510339 to 26527796 17457 + lncRNA gene predicted gene, 41828
Gm48775 19 26572996 to 26584672 11676 + lincRNA gene predicted gene, 48775
Cpgi10718 19 26604475 to 26605613 1138 CpG island CpG island 10718
Smarca2 19 26605088 to 26778321 173233 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Tssr155705 19 26605106 to 26605117 11 + TSS region transcription start site region 155705
Tssr155706 19 26605125 to 26605156 31 + TSS region transcription start site region 155706
Tssr155707 19 26605164 to 26605185 21 + TSS region transcription start site region 155707
Tssr155708 19 26605191 to 26605196 5 + TSS region transcription start site region 155708
Cpgi10719 19 26605742 to 26608099 2357 CpG island CpG island 10719
Tssr155709 19 26606433 to 26606457 24 + TSS region transcription start site region 155709
Tssr155710 19 26606611 to 26606639 28 + TSS region transcription start site region 155710
Tssr155711 19 26606736 to 26606809 73 + TSS region transcription start site region 155711
Tssr155712 19 26607182 to 26607226 44 + TSS region transcription start site region 155712
Tssr155713 19 26607231 to 26607256 25 + TSS region transcription start site region 155713
Tssr155714 19 26607375 to 26607410 35 + TSS region transcription start site region 155714
Tssr155715 19 26607439 to 26607497 58 + TSS region transcription start site region 155715
Gm20616 19 26620822 to 26623419 2597 - lncRNA gene predicted gene 20616
Tssr155716 19 26621983 to 26621987 4 + TSS region transcription start site region 155716
Tssr158702 19 26623394 to 26623431 37 - TSS region transcription start site region 158702
Tssr155717 19 26623401 to 26623418 17 + TSS region transcription start site region 155717
Tssr155718 19 26623419 to 26623471 52 + TSS region transcription start site region 155718
Tssr155719 19 26623941 to 26623960 19 + TSS region transcription start site region 155719
Cpgi10720 19 26640442 to 26640604 162 CpG island CpG island 10720