Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:24054039-25004062

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700021P04Rik 19 24064793 to 24066452 1659 + lincRNA gene RIKEN cDNA 1700021P04 gene
Gm41824 19 24080931 to 24090765 9834 + lncRNA gene predicted gene, 41824
Tjp2 19 24094505 to 24225030 130525 - protein coding gene tight junction protein 2
Tssr158645 19 24125809 to 24125846 37 - TSS region transcription start site region 158645
Cpgi10691 19 24130976 to 24131285 309 CpG island CpG island 10691
Tssr158646 19 24142875 to 24142886 11 - TSS region transcription start site region 158646
Tssr158647 19 24142907 to 24142914 7 - TSS region transcription start site region 158647
Tssr158648 19 24147035 to 24147076 41 - TSS region transcription start site region 158648
Cpgi10692 19 24173625 to 24174820 1195 CpG island CpG island 10692
Tssr158649 19 24174052 to 24174099 47 - TSS region transcription start site region 158649
Tssr158650 19 24174142 to 24174159 17 - TSS region transcription start site region 158650
Tssr158651 19 24175337 to 24175363 26 - TSS region transcription start site region 158651
Tssr158652 19 24191477 to 24191481 4 - TSS region transcription start site region 158652
Tssr155612 19 24197553 to 24197560 7 + TSS region transcription start site region 155612
Tssr155613 19 24197562 to 24197569 7 + TSS region transcription start site region 155613
Tssr5464 19 24200480 to 24200487 7 - TSS region transcription start site region 5464
Tssr158653 19 24200641 to 24200652 11 - TSS region transcription start site region 158653
Tssr158654 19 24200656 to 24200668 12 - TSS region transcription start site region 158654
Tssr158655 19 24201974 to 24201975 1 - TSS region transcription start site region 158655
Tssr155614 19 24224037 to 24224052 15 + TSS region transcription start site region 155614
Cpgi10693 19 24224373 to 24225356 983 CpG island CpG island 10693
Tssr158656 19 24224892 to 24224909 17 - TSS region transcription start site region 158656
Tssr158657 19 24224924 to 24224946 22 - TSS region transcription start site region 158657
Tssr158658 19 24224948 to 24224966 18 - TSS region transcription start site region 158658
Tssr158659 19 24224980 to 24224994 14 - TSS region transcription start site region 158659
Tssr158660 19 24225015 to 24225033 18 - TSS region transcription start site region 158660
Tssr158661 19 24225043 to 24225051 8 - TSS region transcription start site region 158661
Tssr158662 19 24225063 to 24225074 11 - TSS region transcription start site region 158662
Tssr158663 19 24225080 to 24225116 36 - TSS region transcription start site region 158663
D19Mit107 19 24226326 to 24226443 117 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 107
Fxn 19 24261453 to 24280586 19133 - protein coding gene frataxin
Cpgi10694 19 24279854 to 24280810 956 CpG island CpG island 10694
Tssr158664 19 24280551 to 24280615 64 - TSS region transcription start site region 158664
Gm8789 19 24289000 to 24290908 1908 - pseudogene predicted gene 8789
Gm16216 19 24289716 to 24290826 1110 + pseudogene predicted gene 16216
Pip5k1b 19 24294794 to 24555827 261033 - protein coding gene phosphatidylinositol-4-phosphate 5-kinase, type 1 beta
Gm3853 19 24298837 to 24300937 2100 unclassified gene predicted gene 3853
Tssr155615 19 24300663 to 24300673 10 + TSS region transcription start site region 155615
Tssr158665 19 24350756 to 24350758 2 - TSS region transcription start site region 158665
D19Mit117 19 24375777 to 24375885 108 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 117
Tssr155616 19 24416003 to 24416013 10 + TSS region transcription start site region 155616
Pip5k1bos 19 24416009 to 24430329 14320 + antisense lncRNA gene phosphatidylinositol-4-phosphate 5-kinase, type 1 beta, opposite strand
Tssr155617 19 24416022 to 24416031 9 + TSS region transcription start site region 155617
Tssr5465 19 24416035 to 24416042 7 + TSS region transcription start site region 5465
Fam122a 19 24476502 to 24477356 854 - protein coding gene family with sequence similarity 122, member A
Cpgi10695 19 24476539 to 24477890 1351 CpG island CpG island 10695
Tssr155618 19 24476733 to 24476752 19 + TSS region transcription start site region 155618
Tssr155619 19 24476755 to 24476766 11 + TSS region transcription start site region 155619
Tssr155620 19 24476781 to 24476792 11 + TSS region transcription start site region 155620
Tssr158666 19 24477448 to 24477490 42 - TSS region transcription start site region 158666
Tssr155621 19 24477609 to 24477627 18 + TSS region transcription start site region 155621
Tssr158667 19 24477618 to 24477627 9 - TSS region transcription start site region 158667
Tssr155622 19 24500743 to 24500749 6 + TSS region transcription start site region 155622
Tssr158668 19 24508249 to 24508258 9 - TSS region transcription start site region 158668
Tssr158669 19 24514805 to 24514812 7 - TSS region transcription start site region 158669
Tssr158670 19 24518347 to 24518361 14 - TSS region transcription start site region 158670
Tssr158671 19 24518461 to 24518506 45 - TSS region transcription start site region 158671
Tssr158672 19 24518554 to 24518602 48 - TSS region transcription start site region 158672
Tssr158673 19 24518729 to 24518754 25 - TSS region transcription start site region 158673
Tssr155623 19 24521433 to 24521440 7 + TSS region transcription start site region 155623
Tssr158674 19 24527448 to 24527452 4 - TSS region transcription start site region 158674
Tssr158675 19 24529039 to 24529062 23 - TSS region transcription start site region 158675
Tssr155624 19 24529201 to 24529206 5 + TSS region transcription start site region 155624
E860004J03Rik 19 24541197 to 24541454 257 unclassified non-coding RNA gene RIKEN cDNA E860004J03 gene
Cpgi10696 19 24555248 to 24556744 1496 CpG island CpG island 10696
Tssr158676 19 24555804 to 24555815 11 - TSS region transcription start site region 158676
Tssr158677 19 24555819 to 24555888 69 - TSS region transcription start site region 158677
Tssr5466 19 24556144 to 24556155 11 - TSS region transcription start site region 5466
Tssr158678 19 24556190 to 24556266 76 - TSS region transcription start site region 158678
Tssr155625 19 24556326 to 24556337 11 + TSS region transcription start site region 155625
Tssr155626 19 24673998 to 24674017 19 + TSS region transcription start site region 155626
Tmem252 19 24674008 to 24679661 5653 + protein coding gene transmembrane protein 252
Tssr158679 19 24676300 to 24676309 9 - TSS region transcription start site region 158679
Tssr158680 19 24678619 to 24678642 23 - TSS region transcription start site region 158680
Tssr158681 19 24678758 to 24678771 13 - TSS region transcription start site region 158681
Pgm5 19 24683016 to 24861855 178839 - protein coding gene phosphoglucomutase 5
Gm17800 19 24692400 to 24693370 970 - pseudogene predicted gene, 17800
Gm38581 19 24706836 to 24713712 6876 + lncRNA gene predicted gene, 38581
Tssr158682 19 24749718 to 24749722 4 - TSS region transcription start site region 158682
Tssr158683 19 24859400 to 24859406 6 - TSS region transcription start site region 158683
Cpgi10697 19 24861428 to 24862218 790 CpG island CpG island 10697
Tssr158684 19 24861801 to 24861824 23 - TSS region transcription start site region 158684
Tssr158685 19 24861828 to 24861844 16 - TSS region transcription start site region 158685
Tssr158686 19 24861858 to 24861865 7 - TSS region transcription start site region 158686
Tssr158687 19 24862162 to 24862173 11 - TSS region transcription start site region 158687
Tssr158688 19 24862180 to 24862197 17 - TSS region transcription start site region 158688
Tssr158689 19 24862221 to 24862232 11 - TSS region transcription start site region 158689
Tssr158690 19 24862241 to 24862291 50 - TSS region transcription start site region 158690
Tssr155627 19 24875621 to 24875639 18 + TSS region transcription start site region 155627
Tssr155628 19 24875662 to 24875667 5 + TSS region transcription start site region 155628
Tssr155629 19 24875679 to 24875689 10 + TSS region transcription start site region 155629
Gm10053 19 24875686 to 24876634 948 + pseudogene predicted gene 10053
Cpgi10698 19 24897130 to 24897980 850 CpG island CpG island 10698
Foxd4 19 24898965 to 24901309 2344 - protein coding gene forkhead box D4
Cpgi10699 19 24899354 to 24901078 1724 CpG island CpG island 10699
Tssr155630 19 24900431 to 24900450 19 + TSS region transcription start site region 155630
Tssr158691 19 24901010 to 24901048 38 - TSS region transcription start site region 158691
Cbwd1 19 24919916 to 24961616 41700 - protein coding gene COBW domain containing 1
Mir3084-1 19 24942235 to 24942303 68 - miRNA gene microRNA 3084-1
Gm23658 19 24942236 to 24942367 131 - snoRNA gene predicted gene, 23658
Cpgi10700 19 24961414 to 24961889 475 CpG island CpG island 10700
Tssr158692 19 24961545 to 24961630 85 - TSS region transcription start site region 158692
Tssr155631 19 24997421 to 24997425 4 + TSS region transcription start site region 155631
Cpgi10701 19 24998902 to 25000072 1170 CpG island CpG island 10701
Tssr155632 19 24999500 to 24999555 55 + TSS region transcription start site region 155632
Dock8 19 24999529 to 25202432 202903 + protein coding gene dedicator of cytokinesis 8
Tssr155633 19 24999569 to 24999580 11 + TSS region transcription start site region 155633
Tssr158693 19 25002910 to 25002935 25 - TSS region transcription start site region 158693