Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:23417035-24877076

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mamdc2 19 23302609 to 23448322 145713 - protein coding gene MAM domain containing 2
Cpgi10685 19 23448035 to 23448360 325 CpG island CpG island 10685
Tssr158632 19 23448190 to 23448201 11 - TSS region transcription start site region 158632
Tssr158633 19 23448249 to 23448279 30 - TSS region transcription start site region 158633
Tssr158634 19 23448289 to 23448300 11 - TSS region transcription start site region 158634
Tssr158635 19 23448332 to 23448350 18 - TSS region transcription start site region 158635
Tssr158636 19 23448356 to 23448378 22 - TSS region transcription start site region 158636
Tssr158637 19 23448393 to 23448406 13 - TSS region transcription start site region 158637
Tssr158638 19 23448411 to 23448425 14 - TSS region transcription start site region 158638
Gm34012 19 23496764 to 23523052 26288 + lncRNA gene predicted gene, 34012
1700028P14Rik 19 23558760 to 23652812 94052 - protein coding gene RIKEN cDNA 1700028P14 gene
Tssr155590 19 23605837 to 23605843 6 + TSS region transcription start site region 155590
Tssr155591 19 23619325 to 23619327 2 + TSS region transcription start site region 155591
Gm9493 19 23619742 to 23620320 578 + protein coding gene predicted gene 9493
Gm22144 19 23643409 to 23643510 101 + snoRNA gene predicted gene, 22144
Tssr158639 19 23652780 to 23652820 40 - TSS region transcription start site region 158639
Gm21542 19 23666591 to 23667583 992 + pseudogene predicted gene, 21542
Tssr155592 19 23675839 to 23675863 24 + TSS region transcription start site region 155592
Gm6563 19 23675844 to 23676712 868 + pseudogene predicted pseudogene 6563
Cpgi10686 19 23687063 to 23688026 963 CpG island CpG island 10686
Tssr155593 19 23687173 to 23687212 39 + TSS region transcription start site region 155593
Tssr155594 19 23687385 to 23687408 23 + TSS region transcription start site region 155594
Ptar1 19 23687400 to 23721129 33729 + protein coding gene protein prenyltransferase alpha subunit repeat containing 1
Tssr155595 19 23687416 to 23687463 47 + TSS region transcription start site region 155595
Tssr155596 19 23687663 to 23687675 12 + TSS region transcription start site region 155596
Tssr155597 19 23687707 to 23687724 17 + TSS region transcription start site region 155597
Gm9938 19 23723279 to 23725034 1755 + protein coding gene predicted gene 9938
2810455D13Rik 19 23728706 to 23731663 2957 unclassified gene RIKEN cDNA 2810455D13 gene
Tssr155598 19 23730204 to 23730208 4 + TSS region transcription start site region 155598
Cpgi10687 19 23758077 to 23759769 1692 CpG island CpG island 10687
Tssr155599 19 23758792 to 23758807 15 + TSS region transcription start site region 155599
Tssr155600 19 23758819 to 23758907 88 + TSS region transcription start site region 155600
Apba1 19 23758876 to 23949597 190721 + protein coding gene amyloid beta (A4) precursor protein binding, family A, member 1
Tssr155601 19 23758984 to 23758998 14 + TSS region transcription start site region 155601
Tssr155602 19 23759012 to 23759025 13 + TSS region transcription start site region 155602
Tssr155603 19 23845606 to 23845609 3 + TSS region transcription start site region 155603
Tssr155604 19 23857185 to 23857190 5 + TSS region transcription start site region 155604
B230104F01Rik 19 23870739 to 23871825 1086 unclassified gene RIKEN cDNA B230104F01 gene
Cpgi10688 19 23892646 to 23894100 1454 CpG island CpG island 10688
Tssr155605 19 23893485 to 23893502 17 + TSS region transcription start site region 155605
Tssr155606 19 23893506 to 23893536 30 + TSS region transcription start site region 155606
Tssr155607 19 23893541 to 23893553 12 + TSS region transcription start site region 155607
Tssr155608 19 23893589 to 23893609 20 + TSS region transcription start site region 155608
Tssr155609 19 23904577 to 23904583 6 + TSS region transcription start site region 155609
Tssr155610 19 23904589 to 23904632 43 + TSS region transcription start site region 155610
Gm34076 19 23905122 to 23917546 12424 - lncRNA gene predicted gene, 34076
D19Dcr22 19 23934240 to 23934335 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 22
D19Dcr23 19 23956384 to 23956479 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 23
Fam189a2 19 23972751 to 24031019 58268 - protein coding gene family with sequence similarity 189, member A2
Cpgi10689 19 24004652 to 24004808 156 CpG island CpG island 10689
Tssr158640 19 24007334 to 24007354 20 - TSS region transcription start site region 158640
D19Mit73 19 24019333 to 24019482 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 73
Cpgi10690 19 24030271 to 24031550 1279 CpG island CpG island 10690
Tssr155611 19 24030818 to 24030822 4 + TSS region transcription start site region 155611
Tssr158641 19 24030917 to 24030995 78 - TSS region transcription start site region 158641
Tssr158642 19 24031006 to 24031028 22 - TSS region transcription start site region 158642
Tssr158643 19 24031238 to 24031251 13 - TSS region transcription start site region 158643
Tssr158644 19 24042547 to 24042567 20 - TSS region transcription start site region 158644
Gm41823 19 24044383 to 24047157 2774 - lncRNA gene predicted gene, 41823
D19Dcr24 19 24053133 to 24053238 105 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 24
1700021P04Rik 19 24064793 to 24066452 1659 + lincRNA gene RIKEN cDNA 1700021P04 gene
Gm41824 19 24080931 to 24090765 9834 + lncRNA gene predicted gene, 41824
Tjp2 19 24094505 to 24225030 130525 - protein coding gene tight junction protein 2
Tssr158645 19 24125809 to 24125846 37 - TSS region transcription start site region 158645
Cpgi10691 19 24130976 to 24131285 309 CpG island CpG island 10691
Tssr158646 19 24142875 to 24142886 11 - TSS region transcription start site region 158646
Tssr158647 19 24142907 to 24142914 7 - TSS region transcription start site region 158647
Tssr158648 19 24147035 to 24147076 41 - TSS region transcription start site region 158648
Cpgi10692 19 24173625 to 24174820 1195 CpG island CpG island 10692
Tssr158649 19 24174052 to 24174099 47 - TSS region transcription start site region 158649
Tssr158650 19 24174142 to 24174159 17 - TSS region transcription start site region 158650
Tssr158651 19 24175337 to 24175363 26 - TSS region transcription start site region 158651
Tssr158652 19 24191477 to 24191481 4 - TSS region transcription start site region 158652
Tssr155612 19 24197553 to 24197560 7 + TSS region transcription start site region 155612
Tssr155613 19 24197562 to 24197569 7 + TSS region transcription start site region 155613
Tssr5464 19 24200480 to 24200487 7 - TSS region transcription start site region 5464
Tssr158653 19 24200641 to 24200652 11 - TSS region transcription start site region 158653
Tssr158654 19 24200656 to 24200668 12 - TSS region transcription start site region 158654
Tssr158655 19 24201974 to 24201975 1 - TSS region transcription start site region 158655
Tssr155614 19 24224037 to 24224052 15 + TSS region transcription start site region 155614
Cpgi10693 19 24224373 to 24225356 983 CpG island CpG island 10693
Tssr158656 19 24224892 to 24224909 17 - TSS region transcription start site region 158656
Tssr158657 19 24224924 to 24224946 22 - TSS region transcription start site region 158657
Tssr158658 19 24224948 to 24224966 18 - TSS region transcription start site region 158658
Tssr158659 19 24224980 to 24224994 14 - TSS region transcription start site region 158659
Tssr158660 19 24225015 to 24225033 18 - TSS region transcription start site region 158660
Tssr158661 19 24225043 to 24225051 8 - TSS region transcription start site region 158661
Tssr158662 19 24225063 to 24225074 11 - TSS region transcription start site region 158662
Tssr158663 19 24225080 to 24225116 36 - TSS region transcription start site region 158663
D19Mit107 19 24226326 to 24226443 117 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 107
Fxn 19 24261453 to 24280586 19133 - protein coding gene frataxin
Cpgi10694 19 24279854 to 24280810 956 CpG island CpG island 10694
Tssr158664 19 24280551 to 24280615 64 - TSS region transcription start site region 158664
Gm8789 19 24289000 to 24290908 1908 - pseudogene predicted gene 8789
Gm16216 19 24289716 to 24290826 1110 + pseudogene predicted gene 16216
Pip5k1b 19 24294794 to 24555827 261033 - protein coding gene phosphatidylinositol-4-phosphate 5-kinase, type 1 beta
Gm3853 19 24298837 to 24300937 2100 unclassified gene predicted gene 3853
Tssr155615 19 24300663 to 24300673 10 + TSS region transcription start site region 155615
Tssr158665 19 24350756 to 24350758 2 - TSS region transcription start site region 158665
D19Mit117 19 24375777 to 24375885 108 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 117
Tssr155616 19 24416003 to 24416013 10 + TSS region transcription start site region 155616
Pip5k1bos 19 24416009 to 24430329 14320 + antisense lncRNA gene phosphatidylinositol-4-phosphate 5-kinase, type 1 beta, opposite strand
Tssr155617 19 24416022 to 24416031 9 + TSS region transcription start site region 155617
Tssr5465 19 24416035 to 24416042 7 + TSS region transcription start site region 5465
Fam122a 19 24476502 to 24477356 854 - protein coding gene family with sequence similarity 122, member A
Cpgi10695 19 24476539 to 24477890 1351 CpG island CpG island 10695
Tssr155618 19 24476733 to 24476752 19 + TSS region transcription start site region 155618
Tssr155619 19 24476755 to 24476766 11 + TSS region transcription start site region 155619
Tssr155620 19 24476781 to 24476792 11 + TSS region transcription start site region 155620
Tssr158666 19 24477448 to 24477490 42 - TSS region transcription start site region 158666
Tssr155621 19 24477609 to 24477627 18 + TSS region transcription start site region 155621
Tssr158667 19 24477618 to 24477627 9 - TSS region transcription start site region 158667
Tssr155622 19 24500743 to 24500749 6 + TSS region transcription start site region 155622
Tssr158668 19 24508249 to 24508258 9 - TSS region transcription start site region 158668
Tssr158669 19 24514805 to 24514812 7 - TSS region transcription start site region 158669
Tssr158670 19 24518347 to 24518361 14 - TSS region transcription start site region 158670
Tssr158671 19 24518461 to 24518506 45 - TSS region transcription start site region 158671
Tssr158672 19 24518554 to 24518602 48 - TSS region transcription start site region 158672
Tssr158673 19 24518729 to 24518754 25 - TSS region transcription start site region 158673
Tssr155623 19 24521433 to 24521440 7 + TSS region transcription start site region 155623
Tssr158674 19 24527448 to 24527452 4 - TSS region transcription start site region 158674
Tssr158675 19 24529039 to 24529062 23 - TSS region transcription start site region 158675
Tssr155624 19 24529201 to 24529206 5 + TSS region transcription start site region 155624
E860004J03Rik 19 24541197 to 24541454 257 unclassified non-coding RNA gene RIKEN cDNA E860004J03 gene
Cpgi10696 19 24555248 to 24556744 1496 CpG island CpG island 10696
Tssr158676 19 24555804 to 24555815 11 - TSS region transcription start site region 158676
Tssr158677 19 24555819 to 24555888 69 - TSS region transcription start site region 158677
Tssr5466 19 24556144 to 24556155 11 - TSS region transcription start site region 5466
Tssr158678 19 24556190 to 24556266 76 - TSS region transcription start site region 158678
Tssr155625 19 24556326 to 24556337 11 + TSS region transcription start site region 155625
Tssr155626 19 24673998 to 24674017 19 + TSS region transcription start site region 155626
Tmem252 19 24674008 to 24679661 5653 + protein coding gene transmembrane protein 252
Tssr158679 19 24676300 to 24676309 9 - TSS region transcription start site region 158679
Tssr158680 19 24678619 to 24678642 23 - TSS region transcription start site region 158680
Tssr158681 19 24678758 to 24678771 13 - TSS region transcription start site region 158681
Pgm5 19 24683016 to 24861855 178839 - protein coding gene phosphoglucomutase 5
Gm17800 19 24692400 to 24693370 970 - pseudogene predicted gene, 17800
Gm38581 19 24706836 to 24713712 6876 + lncRNA gene predicted gene, 38581
Tssr158682 19 24749718 to 24749722 4 - TSS region transcription start site region 158682
Tssr158683 19 24859400 to 24859406 6 - TSS region transcription start site region 158683
Cpgi10697 19 24861428 to 24862218 790 CpG island CpG island 10697
Tssr158684 19 24861801 to 24861824 23 - TSS region transcription start site region 158684
Tssr158685 19 24861828 to 24861844 16 - TSS region transcription start site region 158685
Tssr158686 19 24861858 to 24861865 7 - TSS region transcription start site region 158686
Tssr158687 19 24862162 to 24862173 11 - TSS region transcription start site region 158687
Tssr158688 19 24862180 to 24862197 17 - TSS region transcription start site region 158688
Tssr158689 19 24862221 to 24862232 11 - TSS region transcription start site region 158689
Tssr158690 19 24862241 to 24862291 50 - TSS region transcription start site region 158690
Tssr155627 19 24875621 to 24875639 18 + TSS region transcription start site region 155627
Tssr155628 19 24875662 to 24875667 5 + TSS region transcription start site region 155628
Tssr155629 19 24875679 to 24875689 10 + TSS region transcription start site region 155629
Gm10053 19 24875686 to 24876634 948 + pseudogene predicted gene 10053