Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:23191591-24142583

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smc5 19 23206451 to 23273897 67446 - protein coding gene structural maintenance of chromosomes 5
Tssr158625 19 23207526 to 23207550 24 - TSS region transcription start site region 158625
D19Ertd756e 19 23216829 to 23217058 229 DNA segment DNA segment, Chr 19, ERATO Doi 756, expressed
Tssr158626 19 23246640 to 23246655 15 - TSS region transcription start site region 158626
Cpgi10684 19 23273224 to 23274310 1086 CpG island CpG island 10684
Tssr158627 19 23273789 to 23273796 7 - TSS region transcription start site region 158627
Tssr158628 19 23273815 to 23273861 46 - TSS region transcription start site region 158628
Tssr158629 19 23273864 to 23273884 20 - TSS region transcription start site region 158629
Tssr158630 19 23273893 to 23273918 25 - TSS region transcription start site region 158630
Gm33950 19 23273925 to 23274359 434 + lncRNA gene predicted gene, 33950
Gm24263 19 23296329 to 23296435 106 + snRNA gene predicted gene, 24263
Gm41821 19 23299930 to 23309919 9989 + lncRNA gene predicted gene, 41821
Mamdc2 19 23302609 to 23448322 145713 - protein coding gene MAM domain containing 2
D19Mit80 19 23313374 to 23313498 124 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 80
Tssr158631 19 23357562 to 23357588 26 - TSS region transcription start site region 158631
Cpgi10685 19 23448035 to 23448360 325 CpG island CpG island 10685
Tssr158632 19 23448190 to 23448201 11 - TSS region transcription start site region 158632
Tssr158633 19 23448249 to 23448279 30 - TSS region transcription start site region 158633
Tssr158634 19 23448289 to 23448300 11 - TSS region transcription start site region 158634
Tssr158635 19 23448332 to 23448350 18 - TSS region transcription start site region 158635
Tssr158636 19 23448356 to 23448378 22 - TSS region transcription start site region 158636
Tssr158637 19 23448393 to 23448406 13 - TSS region transcription start site region 158637
Tssr158638 19 23448411 to 23448425 14 - TSS region transcription start site region 158638
Gm34012 19 23496764 to 23523052 26288 + lncRNA gene predicted gene, 34012
1700028P14Rik 19 23558760 to 23652812 94052 - protein coding gene RIKEN cDNA 1700028P14 gene
Tssr155590 19 23605837 to 23605843 6 + TSS region transcription start site region 155590
Tssr155591 19 23619325 to 23619327 2 + TSS region transcription start site region 155591
Gm9493 19 23619742 to 23620320 578 + protein coding gene predicted gene 9493
Gm22144 19 23643409 to 23643510 101 + snoRNA gene predicted gene, 22144
Tssr158639 19 23652780 to 23652820 40 - TSS region transcription start site region 158639
Gm21542 19 23666591 to 23667583 992 + pseudogene predicted gene, 21542
Tssr155592 19 23675839 to 23675863 24 + TSS region transcription start site region 155592
Gm6563 19 23675844 to 23676712 868 + pseudogene predicted pseudogene 6563
Cpgi10686 19 23687063 to 23688026 963 CpG island CpG island 10686
Tssr155593 19 23687173 to 23687212 39 + TSS region transcription start site region 155593
Tssr155594 19 23687385 to 23687408 23 + TSS region transcription start site region 155594
Ptar1 19 23687400 to 23721129 33729 + protein coding gene protein prenyltransferase alpha subunit repeat containing 1
Tssr155595 19 23687416 to 23687463 47 + TSS region transcription start site region 155595
Tssr155596 19 23687663 to 23687675 12 + TSS region transcription start site region 155596
Tssr155597 19 23687707 to 23687724 17 + TSS region transcription start site region 155597
Gm9938 19 23723279 to 23725034 1755 + protein coding gene predicted gene 9938
2810455D13Rik 19 23728706 to 23731663 2957 unclassified gene RIKEN cDNA 2810455D13 gene
Tssr155598 19 23730204 to 23730208 4 + TSS region transcription start site region 155598
Cpgi10687 19 23758077 to 23759769 1692 CpG island CpG island 10687
Tssr155599 19 23758792 to 23758807 15 + TSS region transcription start site region 155599
Tssr155600 19 23758819 to 23758907 88 + TSS region transcription start site region 155600
Apba1 19 23758876 to 23949597 190721 + protein coding gene amyloid beta (A4) precursor protein binding, family A, member 1
Tssr155601 19 23758984 to 23758998 14 + TSS region transcription start site region 155601
Tssr155602 19 23759012 to 23759025 13 + TSS region transcription start site region 155602
Tssr155603 19 23845606 to 23845609 3 + TSS region transcription start site region 155603
Tssr155604 19 23857185 to 23857190 5 + TSS region transcription start site region 155604
B230104F01Rik 19 23870739 to 23871825 1086 unclassified gene RIKEN cDNA B230104F01 gene
Cpgi10688 19 23892646 to 23894100 1454 CpG island CpG island 10688
Tssr155605 19 23893485 to 23893502 17 + TSS region transcription start site region 155605
Tssr155606 19 23893506 to 23893536 30 + TSS region transcription start site region 155606
Tssr155607 19 23893541 to 23893553 12 + TSS region transcription start site region 155607
Tssr155608 19 23893589 to 23893609 20 + TSS region transcription start site region 155608
Tssr155609 19 23904577 to 23904583 6 + TSS region transcription start site region 155609
Tssr155610 19 23904589 to 23904632 43 + TSS region transcription start site region 155610
Gm34076 19 23905122 to 23917546 12424 - lncRNA gene predicted gene, 34076
D19Dcr22 19 23934240 to 23934335 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 22
D19Dcr23 19 23956384 to 23956479 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 23
Fam189a2 19 23972751 to 24031019 58268 - protein coding gene family with sequence similarity 189, member A2
Cpgi10689 19 24004652 to 24004808 156 CpG island CpG island 10689
Tssr158640 19 24007334 to 24007354 20 - TSS region transcription start site region 158640
D19Mit73 19 24019333 to 24019482 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 73
Cpgi10690 19 24030271 to 24031550 1279 CpG island CpG island 10690
Tssr155611 19 24030818 to 24030822 4 + TSS region transcription start site region 155611
Tssr158641 19 24030917 to 24030995 78 - TSS region transcription start site region 158641
Tssr158642 19 24031006 to 24031028 22 - TSS region transcription start site region 158642
Tssr158643 19 24031238 to 24031251 13 - TSS region transcription start site region 158643
Tssr158644 19 24042547 to 24042567 20 - TSS region transcription start site region 158644
Gm41823 19 24044383 to 24047157 2774 - lncRNA gene predicted gene, 41823
D19Dcr24 19 24053133 to 24053238 105 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 24
1700021P04Rik 19 24064793 to 24066452 1659 + lincRNA gene RIKEN cDNA 1700021P04 gene
Gm41824 19 24080931 to 24090765 9834 + lncRNA gene predicted gene, 41824
Tjp2 19 24094505 to 24225030 130525 - protein coding gene tight junction protein 2
Tssr158645 19 24125809 to 24125846 37 - TSS region transcription start site region 158645
Cpgi10691 19 24130976 to 24131285 309 CpG island CpG island 10691