Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:22321484-23801496

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trpm3 19 22139119 to 22989884 850765 + protein coding gene transient receptor potential cation channel, subfamily M, member 3
Tssr155531 19 22321643 to 22321647 4 + TSS region transcription start site region 155531
Edvq4 19 22328154 to 22328154 0 QTL endothelium dependent vasorelaxation QTL 4
D19Mit45 19 22335962 to 22336106 144 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 45
Tbbr4 19 22335962 to 22336106 144 QTL Trypanosoma brucei brucei response 4
W3q14 19 22335962 to 53923073 31587111 QTL weight 3 weeks QTL 14
Tssr158601 19 22340715 to 22340719 4 - TSS region transcription start site region 158601
D19Mit130 19 22390672 to 22390783 111 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 130
Gm27151 19 22438520 to 22448865 10345 - antisense lncRNA gene predicted gene 27151
Nsa2-ps1 19 22441007 to 22443653 2646 + pseudogene NSA2 ribosome biogenesis homolog, pseudogene 1
Tssr155532 19 22441013 to 22441031 18 + TSS region transcription start site region 155532
Tssr155533 19 22447896 to 22447908 12 + TSS region transcription start site region 155533
Tssr155534 19 22448007 to 22448040 33 + TSS region transcription start site region 155534
Tssr155535 19 22448052 to 22448061 9 + TSS region transcription start site region 155535
Tssr155536 19 22448074 to 22448088 14 + TSS region transcription start site region 155536
Tssr155537 19 22448119 to 22448145 26 + TSS region transcription start site region 155537
Tssr155538 19 22448178 to 22448196 18 + TSS region transcription start site region 155538
Tssr155539 19 22448202 to 22448223 21 + TSS region transcription start site region 155539
Tssr155540 19 22448242 to 22448247 5 + TSS region transcription start site region 155540
Tssr5461 19 22448545 to 22448584 39 - TSS region transcription start site region 5461
Gm33649 19 22509995 to 22517465 7470 + lncRNA gene predicted gene, 33649
Tssr155541 19 22514487 to 22514497 10 + TSS region transcription start site region 155541
9630005C17Rik 19 22552661 to 22555197 2536 unclassified gene RIKEN cDNA 9630005C17 gene
Tssr155542 19 22641497 to 22641503 6 + TSS region transcription start site region 155542
Tssr155543 19 22692347 to 22692372 25 + TSS region transcription start site region 155543
Tssr155544 19 22692573 to 22692595 22 + TSS region transcription start site region 155544
Tssr155545 19 22692600 to 22692609 9 + TSS region transcription start site region 155545
Tssr155546 19 22692613 to 22692630 17 + TSS region transcription start site region 155546
Tssr155547 19 22692715 to 22692724 9 + TSS region transcription start site region 155547
Tssr155548 19 22692774 to 22692827 53 + TSS region transcription start site region 155548
Tssr155549 19 22733538 to 22733543 5 + TSS region transcription start site region 155549
Tssr155550 19 22734959 to 22734980 21 + TSS region transcription start site region 155550
Mir204 19 22750605 to 22750672 67 + miRNA gene microRNA 204
Tssr155551 19 22750670 to 22750672 2 + TSS region transcription start site region 155551
Tssr5462 19 22767955 to 22767956 1 + TSS region transcription start site region 5462
2900017F05Rik 19 22776820 to 22778326 1506 unclassified gene RIKEN cDNA 2900017F05 gene
Tssr155552 19 22800495 to 22800497 2 + TSS region transcription start site region 155552
Tssr155553 19 22813327 to 22813328 1 + TSS region transcription start site region 155553
Tssr155554 19 22816744 to 22816748 4 + TSS region transcription start site region 155554
Tssr155555 19 22851981 to 22852022 41 + TSS region transcription start site region 155555
Tssr155556 19 22869849 to 22869853 4 + TSS region transcription start site region 155556
Tssr155557 19 22887910 to 22887914 4 + TSS region transcription start site region 155557
Tssr155558 19 22913625 to 22913632 7 + TSS region transcription start site region 155558
Tssr155559 19 22927072 to 22927073 1 + TSS region transcription start site region 155559
Tssr5463 19 22942303 to 22942306 3 + TSS region transcription start site region 5463
Tssr155560 19 22959954 to 22959981 27 + TSS region transcription start site region 155560
D19Ertd744e 19 22983857 to 22984077 220 DNA segment DNA segment, Chr 19, ERATO Doi 744, expressed
Tssr158602 19 22992418 to 22992421 3 - TSS region transcription start site region 158602
Tssr155561 19 22994208 to 22994212 4 + TSS region transcription start site region 155561
C330002G04Rik 19 23037390 to 23075853 38463 - lincRNA gene RIKEN cDNA C330002G04 gene
Cpgi10681 19 23057444 to 23057623 179 CpG island CpG island 10681
Tssr158603 19 23058163 to 23058171 8 - TSS region transcription start site region 158603
Tssr158604 19 23058173 to 23058184 11 - TSS region transcription start site region 158604
Tssr155562 19 23061449 to 23061464 15 + TSS region transcription start site region 155562
Tssr155563 19 23061470 to 23061481 11 + TSS region transcription start site region 155563
Tssr155564 19 23061484 to 23061496 12 + TSS region transcription start site region 155564
Tssr155565 19 23061565 to 23061593 28 + TSS region transcription start site region 155565
Tssr158605 19 23075880 to 23075904 24 - TSS region transcription start site region 158605
Tssr158606 19 23087524 to 23087532 8 - TSS region transcription start site region 158606
Tssr155566 19 23087885 to 23087894 9 + TSS region transcription start site region 155566
Tssr155567 19 23087923 to 23087935 12 + TSS region transcription start site region 155567
Tssr155568 19 23090938 to 23090945 7 + TSS region transcription start site region 155568
Tssr158607 19 23092878 to 23092885 7 - TSS region transcription start site region 158607
Tssr158608 19 23093672 to 23093684 12 - TSS region transcription start site region 158608
Tssr158609 19 23093746 to 23093791 45 - TSS region transcription start site region 158609
Tssr155569 19 23093896 to 23093919 23 + TSS region transcription start site region 155569
Tssr155570 19 23096860 to 23096883 23 + TSS region transcription start site region 155570
Tssr158610 19 23132804 to 23132822 18 - TSS region transcription start site region 158610
Tssr155571 19 23133809 to 23133816 7 + TSS region transcription start site region 155571
Cpgi10682 19 23134143 to 23136447 2304 CpG island CpG island 10682
Tssr155572 19 23134493 to 23134498 5 + TSS region transcription start site region 155572
2410080I02Rik 19 23134900 to 23135717 817 + lincRNA gene RIKEN cDNA 2410080I02 gene
Tssr158611 19 23134935 to 23134961 26 - TSS region transcription start site region 158611
Tssr158612 19 23135017 to 23135034 17 - TSS region transcription start site region 158612
Tssr155573 19 23135110 to 23135130 20 + TSS region transcription start site region 155573
Tssr155574 19 23136087 to 23136097 10 + TSS region transcription start site region 155574
Tssr158613 19 23136171 to 23136176 5 - TSS region transcription start site region 158613
Tssr158614 19 23136261 to 23136271 10 - TSS region transcription start site region 158614
Tssr158615 19 23136277 to 23136303 26 - TSS region transcription start site region 158615
Tssr158616 19 23136365 to 23136383 18 - TSS region transcription start site region 158616
Tssr158617 19 23136484 to 23136501 17 - TSS region transcription start site region 158617
Tssr158618 19 23136524 to 23136535 11 - TSS region transcription start site region 158618
Tssr158619 19 23136547 to 23136592 45 - TSS region transcription start site region 158619
Tssr155575 19 23136727 to 23136735 8 + TSS region transcription start site region 155575
Tssr155576 19 23136737 to 23136744 7 + TSS region transcription start site region 155576
Tssr158620 19 23136781 to 23136785 4 - TSS region transcription start site region 158620
Tssr155577 19 23136865 to 23136877 12 + TSS region transcription start site region 155577
Tssr155578 19 23140107 to 23140111 4 + TSS region transcription start site region 155578
Tssr158621 19 23140637 to 23140653 16 - TSS region transcription start site region 158621
Cpgi10683 19 23140654 to 23142639 1985 CpG island CpG island 10683
Tssr155579 19 23140822 to 23140841 19 + TSS region transcription start site region 155579
Tssr155580 19 23140940 to 23140951 11 + TSS region transcription start site region 155580
Tssr155581 19 23140956 to 23140967 11 + TSS region transcription start site region 155581
Tssr158622 19 23140967 to 23140973 6 - TSS region transcription start site region 158622
Tssr155582 19 23140979 to 23141004 25 + TSS region transcription start site region 155582
Tssr155583 19 23141019 to 23141033 14 + TSS region transcription start site region 155583
Tssr155584 19 23141064 to 23141077 13 + TSS region transcription start site region 155584
Tssr155585 19 23141126 to 23141137 11 + TSS region transcription start site region 155585
Tssr155586 19 23141183 to 23141263 80 + TSS region transcription start site region 155586
Klf9 19 23141226 to 23166911 25685 + protein coding gene Kruppel-like factor 9
Tssr155587 19 23141642 to 23141667 25 + TSS region transcription start site region 155587
Tssr155588 19 23141676 to 23141701 25 + TSS region transcription start site region 155588
Tssr158623 19 23142056 to 23142076 20 - TSS region transcription start site region 158623
Tssr158624 19 23142370 to 23142420 50 - TSS region transcription start site region 158624
Mir1192 19 23149431 to 23149551 120 + miRNA gene microRNA 1192
Tssr155589 19 23165227 to 23165240 13 + TSS region transcription start site region 155589
D19Ertd79e 19 23176118 to 23176367 249 DNA segment DNA segment, Chr 19, ERATO Doi 79, expressed
Smc5 19 23206451 to 23273897 67446 - protein coding gene structural maintenance of chromosomes 5
Tssr158625 19 23207526 to 23207550 24 - TSS region transcription start site region 158625
D19Ertd756e 19 23216829 to 23217058 229 DNA segment DNA segment, Chr 19, ERATO Doi 756, expressed
Tssr158626 19 23246640 to 23246655 15 - TSS region transcription start site region 158626
Cpgi10684 19 23273224 to 23274310 1086 CpG island CpG island 10684
Tssr158627 19 23273789 to 23273796 7 - TSS region transcription start site region 158627
Tssr158628 19 23273815 to 23273861 46 - TSS region transcription start site region 158628
Tssr158629 19 23273864 to 23273884 20 - TSS region transcription start site region 158629
Tssr158630 19 23273893 to 23273918 25 - TSS region transcription start site region 158630
Gm33950 19 23273925 to 23274359 434 + lncRNA gene predicted gene, 33950
Gm24263 19 23296329 to 23296435 106 + snRNA gene predicted gene, 24263
Gm41821 19 23299930 to 23309919 9989 + lncRNA gene predicted gene, 41821
Mamdc2 19 23302609 to 23448322 145713 - protein coding gene MAM domain containing 2
D19Mit80 19 23313374 to 23313498 124 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 80
Tssr158631 19 23357562 to 23357588 26 - TSS region transcription start site region 158631
Cpgi10685 19 23448035 to 23448360 325 CpG island CpG island 10685
Tssr158632 19 23448190 to 23448201 11 - TSS region transcription start site region 158632
Tssr158633 19 23448249 to 23448279 30 - TSS region transcription start site region 158633
Tssr158634 19 23448289 to 23448300 11 - TSS region transcription start site region 158634
Tssr158635 19 23448332 to 23448350 18 - TSS region transcription start site region 158635
Tssr158636 19 23448356 to 23448378 22 - TSS region transcription start site region 158636
Tssr158637 19 23448393 to 23448406 13 - TSS region transcription start site region 158637
Tssr158638 19 23448411 to 23448425 14 - TSS region transcription start site region 158638
Gm34012 19 23496764 to 23523052 26288 + lncRNA gene predicted gene, 34012
1700028P14Rik 19 23558760 to 23652812 94052 - protein coding gene RIKEN cDNA 1700028P14 gene
Tssr155590 19 23605837 to 23605843 6 + TSS region transcription start site region 155590
Tssr155591 19 23619325 to 23619327 2 + TSS region transcription start site region 155591
Gm9493 19 23619742 to 23620320 578 + protein coding gene predicted gene 9493
Gm22144 19 23643409 to 23643510 101 + snoRNA gene predicted gene, 22144
Tssr158639 19 23652780 to 23652820 40 - TSS region transcription start site region 158639
Gm21542 19 23666591 to 23667583 992 + pseudogene predicted gene, 21542
Tssr155592 19 23675839 to 23675863 24 + TSS region transcription start site region 155592
Gm6563 19 23675844 to 23676712 868 + pseudogene predicted pseudogene 6563
Cpgi10686 19 23687063 to 23688026 963 CpG island CpG island 10686
Tssr155593 19 23687173 to 23687212 39 + TSS region transcription start site region 155593
Tssr155594 19 23687385 to 23687408 23 + TSS region transcription start site region 155594
Ptar1 19 23687400 to 23721129 33729 + protein coding gene protein prenyltransferase alpha subunit repeat containing 1
Tssr155595 19 23687416 to 23687463 47 + TSS region transcription start site region 155595
Tssr155596 19 23687663 to 23687675 12 + TSS region transcription start site region 155596
Tssr155597 19 23687707 to 23687724 17 + TSS region transcription start site region 155597
Gm9938 19 23723279 to 23725034 1755 + protein coding gene predicted gene 9938
2810455D13Rik 19 23728706 to 23731663 2957 unclassified gene RIKEN cDNA 2810455D13 gene
Tssr155598 19 23730204 to 23730208 4 + TSS region transcription start site region 155598
Cpgi10687 19 23758077 to 23759769 1692 CpG island CpG island 10687
Tssr155599 19 23758792 to 23758807 15 + TSS region transcription start site region 155599
Tssr155600 19 23758819 to 23758907 88 + TSS region transcription start site region 155600
Apba1 19 23758876 to 23949597 190721 + protein coding gene amyloid beta (A4) precursor protein binding, family A, member 1
Tssr155601 19 23758984 to 23758998 14 + TSS region transcription start site region 155601
Tssr155602 19 23759012 to 23759025 13 + TSS region transcription start site region 155602