Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:20383458-21354202

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Anxa1 19 20373434 to 20390671 17237 - protein coding gene annexin A1
Tssr158557 19 20384531 to 20384560 29 - TSS region transcription start site region 158557
Tssr158558 19 20385631 to 20385635 4 - TSS region transcription start site region 158558
Tssr155468 19 20389538 to 20389548 10 + TSS region transcription start site region 155468
Tssr158559 19 20390665 to 20390679 14 - TSS region transcription start site region 158559
Tssr158560 19 20390996 to 20391010 14 - TSS region transcription start site region 158560
Tssr155469 19 20405251 to 20405261 10 + TSS region transcription start site region 155469
Tssr155470 19 20405280 to 20405291 11 + TSS region transcription start site region 155470
1500015L24Rik 19 20405288 to 20422785 17497 + lincRNA gene RIKEN cDNA 1500015L24 gene
Gm32689 19 20424651 to 20435261 10610 - lncRNA gene predicted gene, 32689
D19Mit23 19 20435897 to 20436089 192 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 23
Gm41816 19 20437754 to 20441386 3632 + lncRNA gene predicted gene, 41816
Tssr155471 19 20492217 to 20492241 24 + TSS region transcription start site region 155471
Tssr155472 19 20492265 to 20492272 7 + TSS region transcription start site region 155472
Tssr155473 19 20492577 to 20492588 11 + TSS region transcription start site region 155473
Tssr155474 19 20492606 to 20492617 11 + TSS region transcription start site region 155474
Tssr155475 19 20492663 to 20492670 7 + TSS region transcription start site region 155475
Tssr155476 19 20492678 to 20492689 11 + TSS region transcription start site region 155476
Tssr155477 19 20492694 to 20492747 53 + TSS region transcription start site region 155477
E030003E18Rik 19 20492715 to 20556410 63695 + lncRNA gene RIKEN cDNA E030003E18 gene
Tssr155478 19 20492750 to 20492785 35 + TSS region transcription start site region 155478
Tssr155479 19 20493007 to 20493021 14 + TSS region transcription start site region 155479
Tssr155480 19 20493037 to 20493059 22 + TSS region transcription start site region 155480
Tssr5457 19 20520171 to 20520172 1 + TSS region transcription start site region 5457
C730002L08Rik 19 20534527 to 20552330 17803 - antisense lncRNA gene RIKEN cDNA C730002L08 gene
Tssr158561 19 20536747 to 20536763 16 - TSS region transcription start site region 158561
D19Mit60 19 20562164 to 20562299 135 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 60
Tlyr1 19 20562164 to 25336432 4774268 QTL thymic lymphoma resistance 1
Tgct2 19 20562299 to 3278551 -17283748 QTL testicular germ cell tumor 2
2900002J02Rik 19 20583523 to 20585066 1543 unclassified gene RIKEN cDNA 2900002J02 gene
Gm6684 19 20586073 to 20586757 684 - pseudogene predicted pseudogene 6684
Tssr155481 19 20601958 to 20601974 16 + TSS region transcription start site region 155481
Aldh1a1 19 20601982 to 20643462 41480 + protein coding gene aldehyde dehydrogenase family 1, subfamily A1
Tssr155482 19 20640054 to 20640086 32 + TSS region transcription start site region 155482
C730037M02Rik 19 20689466 to 20690526 1060 unclassified gene RIKEN cDNA C730037M02 gene
Aldh1a7 19 20692953 to 20727556 34603 - protein coding gene aldehyde dehydrogenase family 1, subfamily A7
Tssr158562 19 20727533 to 20727568 35 - TSS region transcription start site region 158562
Tmc1 19 20783458 to 20954202 170744 - protein coding gene transmembrane channel-like gene family 1
Tssr155483 19 20919149 to 20919175 26 + TSS region transcription start site region 155483
Gm32750 19 20941769 to 20954762 12993 + lncRNA gene predicted gene, 32750
Tssr158563 19 20954249 to 20954295 46 - TSS region transcription start site region 158563
Gm41817 19 20956541 to 20961920 5379 + lncRNA gene predicted gene, 41817
Tssr158564 19 20964401 to 20964408 7 - TSS region transcription start site region 158564
Tssr5458 19 20967809 to 20967829 20 + TSS region transcription start site region 5458
Tssr158565 19 21053677 to 21053713 36 - TSS region transcription start site region 158565
Tssr158566 19 21077874 to 21077880 6 - TSS region transcription start site region 158566
4930554I06Rik 19 21104710 to 21105538 828 + lncRNA gene RIKEN cDNA 4930554I06 gene
Gm3775 19 21121191 to 21125705 4514 - lncRNA gene predicted gene 3775
Gm32979 19 21138695 to 21146597 7902 + lncRNA gene predicted gene, 32979
Gm45918 19 21165087 to 21210686 45599 - lncRNA gene predicted gene, 45918
Tssr158567 19 21170864 to 21170869 5 - TSS region transcription start site region 158567
Tssr158568 19 21170925 to 21170939 14 - TSS region transcription start site region 158568
Tssr158569 19 21170949 to 21170956 7 - TSS region transcription start site region 158569
Tssr158570 19 21170964 to 21170994 30 - TSS region transcription start site region 158570
Tssr158571 19 21172488 to 21172514 26 - TSS region transcription start site region 158571
Tssr158572 19 21174851 to 21174860 9 - TSS region transcription start site region 158572
Tssr158573 19 21174872 to 21174883 11 - TSS region transcription start site region 158573
Tssr158574 19 21174884 to 21174905 21 - TSS region transcription start site region 158574
Cpgi10674 19 21271612 to 21273171 1559 CpG island CpG island 10674
Tssr155484 19 21271828 to 21271848 20 + TSS region transcription start site region 155484
Tssr155485 19 21271850 to 21271890 40 + TSS region transcription start site region 155485
Tssr155486 19 21272257 to 21272263 6 + TSS region transcription start site region 155486
Tssr155487 19 21272276 to 21272296 20 + TSS region transcription start site region 155487
Zfand5 19 21272278 to 21282289 10011 + protein coding gene zinc finger, AN1-type domain 5
Tssr155488 19 21272516 to 21272542 26 + TSS region transcription start site region 155488
Tssr155489 19 21274436 to 21274453 17 + TSS region transcription start site region 155489
Tssr155490 19 21275050 to 21275079 29 + TSS region transcription start site region 155490
Tssr155491 19 21276438 to 21276457 19 + TSS region transcription start site region 155491
Tssr155492 19 21276459 to 21276476 17 + TSS region transcription start site region 155492
Tssr155493 19 21277700 to 21277723 23 + TSS region transcription start site region 155493
Tssr155494 19 21278172 to 21278174 2 + TSS region transcription start site region 155494
1500002I01Rik 19 21293945 to 21295009 1064 unclassified gene RIKEN cDNA 1500002I01 gene
D19Mit14 19 21333416 to 21333564 148 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 14