Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:19064249-22844295

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240 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rorb 19 18930609 to 19111196 180587 - protein coding gene RAR-related orphan receptor beta
Tssr158537 19 19067588 to 19067629 41 - TSS region transcription start site region 158537
Tssr158538 19 19079076 to 19079091 15 - TSS region transcription start site region 158538
Tssr158539 19 19079542 to 19079545 3 - TSS region transcription start site region 158539
Tssr158540 19 19099773 to 19099777 4 - TSS region transcription start site region 158540
Tssr158541 19 19100270 to 19100273 3 - TSS region transcription start site region 158541
Cpgi10672 19 19110061 to 19110818 757 CpG island CpG island 10672
Tssr158542 19 19110939 to 19110950 11 - TSS region transcription start site region 158542
Cpgi10673 19 19111065 to 19111633 568 CpG island CpG island 10673
Tssr158543 19 19111181 to 19111203 22 - TSS region transcription start site region 158543
Tssr158544 19 19111207 to 19111221 14 - TSS region transcription start site region 158544
Gm25437 19 19275899 to 19276030 131 + snoRNA gene predicted gene, 25437
Gm41815 19 19284543 to 19319645 35102 + lncRNA gene predicted gene, 41815
D19Mit113 19 19356373 to 19356514 141 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology-113
Gm32469 19 19821035 to 19979149 158114 + lncRNA gene predicted gene, 32469
Gm3728 19 20005940 to 20028686 22746 - protein coding gene predicted gene 3728
Tssr158545 19 20010139 to 20010148 9 - TSS region transcription start site region 158545
Gm22684 19 20033504 to 20033635 131 - snoRNA gene predicted gene, 22684
Tssr158546 19 20116663 to 20116666 3 - TSS region transcription start site region 158546
Gm32629 19 20123493 to 20283256 159763 - lncRNA gene predicted gene, 32629
Tssr158547 19 20123867 to 20123874 7 - TSS region transcription start site region 158547
Tssr158548 19 20123890 to 20123908 18 - TSS region transcription start site region 158548
Tssr158549 19 20123910 to 20123919 9 - TSS region transcription start site region 158549
D19Mit110 19 20286185 to 20286354 169 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 110
D19Mit16 19 20345852 to 20345984 132 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 16
Bits4 19 20345852 to 20345984 132 QTL bitterness sensitivity 4
Faq10 19 20345852 to 20345984 132 QTL fluctuating asymmetry QTL 10
Pas3 19 20345852 to 20345984 132 QTL pulmonary adenoma susceptibility 3
Skull26 19 20345852 to 20345984 132 QTL skull morphology 26
Tssr158550 19 20372903 to 20372928 25 - TSS region transcription start site region 158550
Tssr155466 19 20373425 to 20373440 15 + TSS region transcription start site region 155466
Anxa1 19 20373434 to 20390671 17237 - protein coding gene annexin A1
Tssr158551 19 20373560 to 20373701 141 - TSS region transcription start site region 158551
Tssr158552 19 20373705 to 20373739 34 - TSS region transcription start site region 158552
Tssr158553 19 20375271 to 20375355 84 - TSS region transcription start site region 158553
Tssr158554 19 20378411 to 20378471 60 - TSS region transcription start site region 158554
Tssr158555 19 20379673 to 20379714 41 - TSS region transcription start site region 158555
Tssr155467 19 20382040 to 20382057 17 + TSS region transcription start site region 155467
Tssr158556 19 20382886 to 20382986 100 - TSS region transcription start site region 158556
Tssr158557 19 20384531 to 20384560 29 - TSS region transcription start site region 158557
Tssr158558 19 20385631 to 20385635 4 - TSS region transcription start site region 158558
Tssr155468 19 20389538 to 20389548 10 + TSS region transcription start site region 155468
Tssr158559 19 20390665 to 20390679 14 - TSS region transcription start site region 158559
Tssr158560 19 20390996 to 20391010 14 - TSS region transcription start site region 158560
Tssr155469 19 20405251 to 20405261 10 + TSS region transcription start site region 155469
Tssr155470 19 20405280 to 20405291 11 + TSS region transcription start site region 155470
1500015L24Rik 19 20405288 to 20422785 17497 + lincRNA gene RIKEN cDNA 1500015L24 gene
Gm32689 19 20424651 to 20435261 10610 - lncRNA gene predicted gene, 32689
D19Mit23 19 20435897 to 20436089 192 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 23
Gm41816 19 20437754 to 20441386 3632 + lncRNA gene predicted gene, 41816
Tssr155471 19 20492217 to 20492241 24 + TSS region transcription start site region 155471
Tssr155472 19 20492265 to 20492272 7 + TSS region transcription start site region 155472
Tssr155473 19 20492577 to 20492588 11 + TSS region transcription start site region 155473
Tssr155474 19 20492606 to 20492617 11 + TSS region transcription start site region 155474
Tssr155475 19 20492663 to 20492670 7 + TSS region transcription start site region 155475
Tssr155476 19 20492678 to 20492689 11 + TSS region transcription start site region 155476
Tssr155477 19 20492694 to 20492747 53 + TSS region transcription start site region 155477
E030003E18Rik 19 20492715 to 20556410 63695 + lncRNA gene RIKEN cDNA E030003E18 gene
Tssr155478 19 20492750 to 20492785 35 + TSS region transcription start site region 155478
Tssr155479 19 20493007 to 20493021 14 + TSS region transcription start site region 155479
Tssr155480 19 20493037 to 20493059 22 + TSS region transcription start site region 155480
Tssr5457 19 20520171 to 20520172 1 + TSS region transcription start site region 5457
C730002L08Rik 19 20534527 to 20552330 17803 - antisense lncRNA gene RIKEN cDNA C730002L08 gene
Tssr158561 19 20536747 to 20536763 16 - TSS region transcription start site region 158561
D19Mit60 19 20562164 to 20562299 135 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 60
Tlyr1 19 20562164 to 25336432 4774268 QTL thymic lymphoma resistance 1
Tgct2 19 20562299 to 3278551 -17283748 QTL testicular germ cell tumor 2
2900002J02Rik 19 20583523 to 20585066 1543 unclassified gene RIKEN cDNA 2900002J02 gene
Gm6684 19 20586073 to 20586757 684 - pseudogene predicted pseudogene 6684
Tssr155481 19 20601958 to 20601974 16 + TSS region transcription start site region 155481
Aldh1a1 19 20601982 to 20643462 41480 + protein coding gene aldehyde dehydrogenase family 1, subfamily A1
Tssr155482 19 20640054 to 20640086 32 + TSS region transcription start site region 155482
C730037M02Rik 19 20689466 to 20690526 1060 unclassified gene RIKEN cDNA C730037M02 gene
Aldh1a7 19 20692953 to 20727556 34603 - protein coding gene aldehyde dehydrogenase family 1, subfamily A7
Tssr158562 19 20727533 to 20727568 35 - TSS region transcription start site region 158562
Tmc1 19 20783458 to 20954202 170744 - protein coding gene transmembrane channel-like gene family 1
Tssr155483 19 20919149 to 20919175 26 + TSS region transcription start site region 155483
Gm32750 19 20941769 to 20954762 12993 + lncRNA gene predicted gene, 32750
Tssr158563 19 20954249 to 20954295 46 - TSS region transcription start site region 158563
Gm41817 19 20956541 to 20961920 5379 + lncRNA gene predicted gene, 41817
Tssr158564 19 20964401 to 20964408 7 - TSS region transcription start site region 158564
Tssr5458 19 20967809 to 20967829 20 + TSS region transcription start site region 5458
Tssr158565 19 21053677 to 21053713 36 - TSS region transcription start site region 158565
Tssr158566 19 21077874 to 21077880 6 - TSS region transcription start site region 158566
4930554I06Rik 19 21104710 to 21105538 828 + lncRNA gene RIKEN cDNA 4930554I06 gene
Gm3775 19 21121191 to 21125705 4514 - lncRNA gene predicted gene 3775
Gm32979 19 21138695 to 21146597 7902 + lncRNA gene predicted gene, 32979
Gm45918 19 21165087 to 21210686 45599 - lncRNA gene predicted gene, 45918
Tssr158567 19 21170864 to 21170869 5 - TSS region transcription start site region 158567
Tssr158568 19 21170925 to 21170939 14 - TSS region transcription start site region 158568
Tssr158569 19 21170949 to 21170956 7 - TSS region transcription start site region 158569
Tssr158570 19 21170964 to 21170994 30 - TSS region transcription start site region 158570
Tssr158571 19 21172488 to 21172514 26 - TSS region transcription start site region 158571
Tssr158572 19 21174851 to 21174860 9 - TSS region transcription start site region 158572
Tssr158573 19 21174872 to 21174883 11 - TSS region transcription start site region 158573
Tssr158574 19 21174884 to 21174905 21 - TSS region transcription start site region 158574
Cpgi10674 19 21271612 to 21273171 1559 CpG island CpG island 10674
Tssr155484 19 21271828 to 21271848 20 + TSS region transcription start site region 155484
Tssr155485 19 21271850 to 21271890 40 + TSS region transcription start site region 155485
Tssr155486 19 21272257 to 21272263 6 + TSS region transcription start site region 155486
Tssr155487 19 21272276 to 21272296 20 + TSS region transcription start site region 155487
Zfand5 19 21272278 to 21282289 10011 + protein coding gene zinc finger, AN1-type domain 5
Tssr155488 19 21272516 to 21272542 26 + TSS region transcription start site region 155488
Tssr155489 19 21274436 to 21274453 17 + TSS region transcription start site region 155489
Tssr155490 19 21275050 to 21275079 29 + TSS region transcription start site region 155490
Tssr155491 19 21276438 to 21276457 19 + TSS region transcription start site region 155491
Tssr155492 19 21276459 to 21276476 17 + TSS region transcription start site region 155492
Tssr155493 19 21277700 to 21277723 23 + TSS region transcription start site region 155493
Tssr155494 19 21278172 to 21278174 2 + TSS region transcription start site region 155494
1500002I01Rik 19 21293945 to 21295009 1064 unclassified gene RIKEN cDNA 1500002I01 gene
D19Mit14 19 21333416 to 21333564 148 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 14
Tssr155495 19 21377295 to 21377305 10 + TSS region transcription start site region 155495
Tssr158575 19 21383896 to 21383907 11 - TSS region transcription start site region 158575
Tssr158576 19 21384042 to 21384051 9 - TSS region transcription start site region 158576
Gda 19 21391307 to 21472661 81354 - protein coding gene guanine deaminase
Tssr155496 19 21396609 to 21396616 7 + TSS region transcription start site region 155496
Tssr155497 19 21396636 to 21396657 21 + TSS region transcription start site region 155497
Tssr155498 19 21419321 to 21419325 4 + TSS region transcription start site region 155498
Tssr158577 19 21440852 to 21440872 20 - TSS region transcription start site region 158577
Tssr158578 19 21440889 to 21440902 13 - TSS region transcription start site region 158578
Tssr158579 19 21446361 to 21446366 5 - TSS region transcription start site region 158579
Tssr158580 19 21457500 to 21457501 1 - TSS region transcription start site region 158580
Tssr158581 19 21460882 to 21460884 2 - TSS region transcription start site region 158581
Tssr158582 19 21461300 to 21461309 9 - TSS region transcription start site region 158582
Tssr5459 19 21461317 to 21461329 12 - TSS region transcription start site region 5459
Tssr158583 19 21465189 to 21465191 2 - TSS region transcription start site region 158583
Tssr158584 19 21471138 to 21471149 11 - TSS region transcription start site region 158584
Tssr158585 19 21471160 to 21471174 14 - TSS region transcription start site region 158585
Tssr158586 19 21471188 to 21471205 17 - TSS region transcription start site region 158586
Tssr158587 19 21471280 to 21471282 2 - TSS region transcription start site region 158587
Tssr155499 19 21471334 to 21471348 14 + TSS region transcription start site region 155499
Cpgi10675 19 21472098 to 21472738 640 CpG island CpG island 10675
Tssr158588 19 21472512 to 21472533 21 - TSS region transcription start site region 158588
Tssr158589 19 21472552 to 21472606 54 - TSS region transcription start site region 158589
2010105D22Rik 19 21487931 to 21488151 220 unclassified gene RIKEN cDNA 2010105D22 gene
Gm3443 19 21555674 to 21557657 1983 + protein coding gene predicted gene 3443
Gm38486 19 21577760 to 21596179 18419 - lncRNA gene predicted gene, 38486
1110059E24Rik 19 21597313 to 21652791 55478 - protein coding gene RIKEN cDNA 1110059E24 gene
9030607L02Rik 19 21601220 to 21602899 1679 unclassified gene RIKEN cDNA 9030607L02 gene
Tssr158590 19 21630734 to 21630741 7 - TSS region transcription start site region 158590
Tssr158591 19 21630762 to 21630783 21 - TSS region transcription start site region 158591
Tssr158592 19 21630784 to 21630803 19 - TSS region transcription start site region 158592
Cpgi10676 19 21652168 to 21653948 1780 CpG island CpG island 10676
Tssr158593 19 21652714 to 21652723 9 - TSS region transcription start site region 158593
Tssr158594 19 21652745 to 21652769 24 - TSS region transcription start site region 158594
Tssr158595 19 21652779 to 21652819 40 - TSS region transcription start site region 158595
Tssr155500 19 21652850 to 21652902 52 + TSS region transcription start site region 155500
Tssr155501 19 21653104 to 21653109 5 + TSS region transcription start site region 155501
Tssr155502 19 21653113 to 21653124 11 + TSS region transcription start site region 155502
Tssr155503 19 21653176 to 21653192 16 + TSS region transcription start site region 155503
Tssr155504 19 21653197 to 21653213 16 + TSS region transcription start site region 155504
Tssr155505 19 21653276 to 21653301 25 + TSS region transcription start site region 155505
Tssr155506 19 21653302 to 21653320 18 + TSS region transcription start site region 155506
Abhd17b 19 21653309 to 21685637 32328 + protein coding gene abhydrolase domain containing 17B
Tssr155507 19 21653323 to 21653345 22 + TSS region transcription start site region 155507
Tssr155508 19 21653428 to 21653445 17 + TSS region transcription start site region 155508
Tssr155509 19 21653482 to 21653507 25 + TSS region transcription start site region 155509
Tssr155510 19 21653522 to 21653536 14 + TSS region transcription start site region 155510
Tssr155511 19 21653555 to 21653566 11 + TSS region transcription start site region 155511
5033423O07Rik 19 21657795 to 21661572 3777 unclassified gene RIKEN cDNA 5033423O07 gene
B230378D16Rik 19 21663157 to 21666017 2860 unclassified gene RIKEN cDNA B230378D16 gene
Tssr158596 19 21674871 to 21674880 9 - TSS region transcription start site region 158596
Tssr158597 19 21674887 to 21674909 22 - TSS region transcription start site region 158597
C130076G22Rik 19 21689291 to 21691116 1825 unclassified gene RIKEN cDNA C130076G22 gene
Gm41818 19 21713818 to 21732331 18513 + lncRNA gene predicted gene, 41818
Tssr155512 19 21713840 to 21713861 21 + TSS region transcription start site region 155512
Tssr158598 19 21737654 to 21737662 8 - TSS region transcription start site region 158598
Cpgi10677 19 21742099 to 21742476 377 CpG island CpG island 10677
Tssr155513 19 21777525 to 21777530 5 + TSS region transcription start site region 155513
Cpgi10678 19 21777953 to 21779164 1211 CpG island CpG island 10678
Tssr5460 19 21778297 to 21778300 3 + TSS region transcription start site region 5460
Tssr155514 19 21778307 to 21778318 11 + TSS region transcription start site region 155514
Tssr155515 19 21778325 to 21778363 38 + TSS region transcription start site region 155515
Cemip2 19 21778342 to 21858327 79985 + protein coding gene cell migration inducing hyaluronidase 2
Tssr155516 19 21778365 to 21778374 9 + TSS region transcription start site region 155516
Tssr155517 19 21778376 to 21778392 16 + TSS region transcription start site region 155517
Tssr155518 19 21778642 to 21778651 9 + TSS region transcription start site region 155518
Tssr155519 19 21784802 to 21784809 7 + TSS region transcription start site region 155519
Cpgi10679 19 21792710 to 21792945 235 CpG island CpG island 10679
Tssr155520 19 21792777 to 21792799 22 + TSS region transcription start site region 155520
Tssr155521 19 21792816 to 21792841 25 + TSS region transcription start site region 155521
Tssr155522 19 21793252 to 21793256 4 + TSS region transcription start site region 155522
Gm18951 19 21837571 to 21838711 1140 + pseudogene predicted gene, 18951
Tssr155523 19 21839959 to 21839964 5 + TSS region transcription start site region 155523
Tssr155524 19 21840255 to 21840260 5 + TSS region transcription start site region 155524
D19Mit96 19 21841593 to 21841711 118 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 96
Tssr155525 19 21851417 to 21851430 13 + TSS region transcription start site region 155525
Tssr155526 19 21858075 to 21858081 6 + TSS region transcription start site region 155526
Pstc7 19 21871073 to 21871073 0 QTL periosteal circumference 7
Tssr155527 19 21937297 to 21937312 15 + TSS region transcription start site region 155527
Gm5514 19 21938079 to 21938384 305 + pseudogene predicted gene 5514
Tssr158599 19 21942394 to 21942399 5 - TSS region transcription start site region 158599
Tssr158600 19 21942419 to 21942428 9 - TSS region transcription start site region 158600
Tssr155528 19 21992573 to 21992596 23 + TSS region transcription start site region 155528
Tgct3 19 22006727 to 32935319 10928592 QTL testicular germ cell tumor 3
D19Mit111 19 22006727 to 22006851 124 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 111
Tssr155529 19 22040852 to 22040883 31 + TSS region transcription start site region 155529
Cpgi10680 19 22138831 to 22139381 550 CpG island CpG island 10680
Tssr155530 19 22139028 to 22139055 27 + TSS region transcription start site region 155530
Trpm3 19 22139119 to 22989884 850765 + protein coding gene transient receptor potential cation channel, subfamily M, member 3