Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:17812606-23172617

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389 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcsk5 19 17432832 to 17837632 404800 - protein coding gene proprotein convertase subtilisin/kexin type 5
Cpgi10665 19 17835798 to 17836270 472 CpG island CpG island 10665
Cpgi10666 19 17836493 to 17837865 1372 CpG island CpG island 10666
Tssr158513 19 17837620 to 17837642 22 - TSS region transcription start site region 158513
Gm22880 19 17865317 to 17865419 102 - snRNA gene predicted gene, 22880
Gm23063 19 17891959 to 17892051 92 - miRNA gene predicted gene, 23063
Tssr158514 19 17901196 to 17901198 2 - TSS region transcription start site region 158514
Tssr155441 19 17926552 to 17926555 3 + TSS region transcription start site region 155441
Eef1a1-ps1 19 17926557 to 17928613 2056 + pseudogene eukaryotic translation elongation factor 1 alpha 1, pseudogene 1
Gm23061 19 17928111 to 17928226 115 + miRNA gene predicted gene, 23061
D19Dcr77 19 17972361 to 17972456 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 77
D19Dcr78 19 18015254 to 18015349 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 78
Tssr5454 19 18063876 to 18063877 1 + TSS region transcription start site region 5454
Gm18610 19 18205166 to 18205795 629 - pseudogene predicted gene, 18610
D19Mit85 19 18529681 to 18529936 255 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 85
Rpl29-ps6 19 18565138 to 18565755 617 + pseudogene ribosomal protein L29, pseudogene 6
Tssr158515 19 18568036 to 18568041 5 - TSS region transcription start site region 158515
Ostf1 19 18580364 to 18631813 51449 - protein coding gene osteoclast stimulating factor 1
Tssr155442 19 18581429 to 18581439 10 + TSS region transcription start site region 155442
Gm8250 19 18581455 to 18582228 773 + pseudogene predicted gene 8250
Tssr158516 19 18589729 to 18589761 32 - TSS region transcription start site region 158516
Tssr158517 19 18596729 to 18596733 4 - TSS region transcription start site region 158517
1110034N17Rik 19 18627446 to 18627920 474 unclassified gene RIKEN cDNA 1110034N17 gene
Tssr158518 19 18630906 to 18630909 3 - TSS region transcription start site region 158518
Cpgi10667 19 18631180 to 18632224 1044 CpG island CpG island 10667
Tssr158519 19 18631748 to 18631753 5 - TSS region transcription start site region 158519
Tssr158520 19 18631754 to 18631824 70 - TSS region transcription start site region 158520
Tssr158521 19 18631834 to 18631847 13 - TSS region transcription start site region 158521
Tssr155443 19 18631927 to 18631963 36 + TSS region transcription start site region 155443
Nmrk1 19 18631950 to 18652194 20244 + protein coding gene nicotinamide riboside kinase 1
Tssr155444 19 18631979 to 18632008 29 + TSS region transcription start site region 155444
Cpgi10668 19 18670489 to 18671766 1277 CpG island CpG island 10668
Tssr155445 19 18670724 to 18670779 55 + TSS region transcription start site region 155445
Carnmt1 19 18670780 to 18704788 34008 + protein coding gene carnosine N-methyltransferase 1
Tssr155446 19 18670780 to 18670810 30 + TSS region transcription start site region 155446
Tssr155447 19 18670812 to 18670849 37 + TSS region transcription start site region 155447
Tssr155448 19 18670908 to 18670928 20 + TSS region transcription start site region 155448
Tssr5455 19 18670940 to 18670950 10 + TSS region transcription start site region 5455
Tssr155449 19 18671190 to 18671201 11 + TSS region transcription start site region 155449
Chab5 19 18676400 to 18676563 163 QTL cholesterol absorption 5
D19Mit41 19 18676400 to 18676563 163 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 41
Tssr155450 19 18681242 to 18681243 1 + TSS region transcription start site region 155450
4930447K04Rik 19 18705797 to 18707199 1402 unclassified gene RIKEN cDNA 4930447K04 gene
Cpgi10669 19 18712779 to 18713851 1072 CpG island CpG island 10669
Tssr155451 19 18713165 to 18713187 22 + TSS region transcription start site region 155451
Tssr155452 19 18713192 to 18713212 20 + TSS region transcription start site region 155452
D030056L22Rik 19 18713193 to 18718428 5235 + protein coding gene RIKEN cDNA D030056L22 gene
Tssr155453 19 18713225 to 18713243 18 + TSS region transcription start site region 155453
Tssr155454 19 18730612 to 18730617 5 + TSS region transcription start site region 155454
Tssr155455 19 18730630 to 18730649 19 + TSS region transcription start site region 155455
Tssr155456 19 18730658 to 18730689 31 + TSS region transcription start site region 155456
Tssr155457 19 18731429 to 18731440 11 + TSS region transcription start site region 155457
Tssr155458 19 18732740 to 18732743 3 + TSS region transcription start site region 155458
Gm23238 19 18732741 to 18732904 163 + snRNA gene predicted gene, 23238
Gm41814 19 18736739 to 18749516 12777 - lncRNA gene predicted gene, 41814
Tssr158522 19 18748515 to 18748519 4 - TSS region transcription start site region 158522
Cpgi10670 19 18749624 to 18750136 512 CpG island CpG island 10670
Tssr155459 19 18749724 to 18749743 19 + TSS region transcription start site region 155459
Tssr155460 19 18749745 to 18749768 23 + TSS region transcription start site region 155460
Trpm6 19 18749983 to 18892510 142527 + protein coding gene transient receptor potential cation channel, subfamily M, member 6
Tssr155461 19 18758607 to 18758645 38 + TSS region transcription start site region 155461
Tssr155462 19 18776172 to 18776182 10 + TSS region transcription start site region 155462
Gm24190 19 18776746 to 18776961 215 - unclassified non-coding RNA gene predicted gene, 24190
Tssr155463 19 18840606 to 18840618 12 + TSS region transcription start site region 155463
Tssr155464 19 18840640 to 18840649 9 + TSS region transcription start site region 155464
Tssr155465 19 18855668 to 18855672 4 + TSS region transcription start site region 155465
Tssr5456 19 18888089 to 18888093 4 + TSS region transcription start site region 5456
Rorb 19 18930609 to 19111196 180587 - protein coding gene RAR-related orphan receptor beta
Tssr158523 19 18936154 to 18936156 2 - TSS region transcription start site region 158523
Tssr158524 19 18936377 to 18936384 7 - TSS region transcription start site region 158524
Tssr158525 19 18936391 to 18936428 37 - TSS region transcription start site region 158525
Tssr158526 19 18936496 to 18936499 3 - TSS region transcription start site region 158526
Tssr158527 19 18936597 to 18936606 9 - TSS region transcription start site region 158527
Tssr158528 19 18936613 to 18936625 12 - TSS region transcription start site region 158528
Tssr158529 19 18936691 to 18936709 18 - TSS region transcription start site region 158529
Cpgi10671 19 18977636 to 18977980 344 CpG island CpG island 10671
Tssr158530 19 19001070 to 19001075 5 - TSS region transcription start site region 158530
Tssr158531 19 19001099 to 19001119 20 - TSS region transcription start site region 158531
Tssr158532 19 19001148 to 19001151 3 - TSS region transcription start site region 158532
Tssr158533 19 19005239 to 19005262 23 - TSS region transcription start site region 158533
Tssr158534 19 19032243 to 19032249 6 - TSS region transcription start site region 158534
Tssr158535 19 19035516 to 19035517 1 - TSS region transcription start site region 158535
Tssr158536 19 19050951 to 19050954 3 - TSS region transcription start site region 158536
Tssr158537 19 19067588 to 19067629 41 - TSS region transcription start site region 158537
Tssr158538 19 19079076 to 19079091 15 - TSS region transcription start site region 158538
Tssr158539 19 19079542 to 19079545 3 - TSS region transcription start site region 158539
Tssr158540 19 19099773 to 19099777 4 - TSS region transcription start site region 158540
Tssr158541 19 19100270 to 19100273 3 - TSS region transcription start site region 158541
Cpgi10672 19 19110061 to 19110818 757 CpG island CpG island 10672
Tssr158542 19 19110939 to 19110950 11 - TSS region transcription start site region 158542
Cpgi10673 19 19111065 to 19111633 568 CpG island CpG island 10673
Tssr158543 19 19111181 to 19111203 22 - TSS region transcription start site region 158543
Tssr158544 19 19111207 to 19111221 14 - TSS region transcription start site region 158544
Gm25437 19 19275899 to 19276030 131 + snoRNA gene predicted gene, 25437
Gm41815 19 19284543 to 19319645 35102 + lncRNA gene predicted gene, 41815
D19Mit113 19 19356373 to 19356514 141 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology-113
Gm32469 19 19821035 to 19979149 158114 + lncRNA gene predicted gene, 32469
Gm3728 19 20005940 to 20028686 22746 - protein coding gene predicted gene 3728
Tssr158545 19 20010139 to 20010148 9 - TSS region transcription start site region 158545
Gm22684 19 20033504 to 20033635 131 - snoRNA gene predicted gene, 22684
Tssr158546 19 20116663 to 20116666 3 - TSS region transcription start site region 158546
Gm32629 19 20123493 to 20283256 159763 - lncRNA gene predicted gene, 32629
Tssr158547 19 20123867 to 20123874 7 - TSS region transcription start site region 158547
Tssr158548 19 20123890 to 20123908 18 - TSS region transcription start site region 158548
Tssr158549 19 20123910 to 20123919 9 - TSS region transcription start site region 158549
D19Mit110 19 20286185 to 20286354 169 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 110
Bits4 19 20345852 to 20345984 132 QTL bitterness sensitivity 4
D19Mit16 19 20345852 to 20345984 132 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 16
Faq10 19 20345852 to 20345984 132 QTL fluctuating asymmetry QTL 10
Skull26 19 20345852 to 20345984 132 QTL skull morphology 26
Pas3 19 20345852 to 20345984 132 QTL pulmonary adenoma susceptibility 3
Tssr158550 19 20372903 to 20372928 25 - TSS region transcription start site region 158550
Tssr155466 19 20373425 to 20373440 15 + TSS region transcription start site region 155466
Anxa1 19 20373434 to 20390671 17237 - protein coding gene annexin A1
Tssr158551 19 20373560 to 20373701 141 - TSS region transcription start site region 158551
Tssr158552 19 20373705 to 20373739 34 - TSS region transcription start site region 158552
Tssr158553 19 20375271 to 20375355 84 - TSS region transcription start site region 158553
Tssr158554 19 20378411 to 20378471 60 - TSS region transcription start site region 158554
Tssr158555 19 20379673 to 20379714 41 - TSS region transcription start site region 158555
Tssr155467 19 20382040 to 20382057 17 + TSS region transcription start site region 155467
Tssr158556 19 20382886 to 20382986 100 - TSS region transcription start site region 158556
Tssr158557 19 20384531 to 20384560 29 - TSS region transcription start site region 158557
Tssr158558 19 20385631 to 20385635 4 - TSS region transcription start site region 158558
Tssr155468 19 20389538 to 20389548 10 + TSS region transcription start site region 155468
Tssr158559 19 20390665 to 20390679 14 - TSS region transcription start site region 158559
Tssr158560 19 20390996 to 20391010 14 - TSS region transcription start site region 158560
Tssr155469 19 20405251 to 20405261 10 + TSS region transcription start site region 155469
Tssr155470 19 20405280 to 20405291 11 + TSS region transcription start site region 155470
1500015L24Rik 19 20405288 to 20422785 17497 + lincRNA gene RIKEN cDNA 1500015L24 gene
Gm32689 19 20424651 to 20435261 10610 - lncRNA gene predicted gene, 32689
D19Mit23 19 20435897 to 20436089 192 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 23
Gm41816 19 20437754 to 20441386 3632 + lncRNA gene predicted gene, 41816
Tssr155471 19 20492217 to 20492241 24 + TSS region transcription start site region 155471
Tssr155472 19 20492265 to 20492272 7 + TSS region transcription start site region 155472
Tssr155473 19 20492577 to 20492588 11 + TSS region transcription start site region 155473
Tssr155474 19 20492606 to 20492617 11 + TSS region transcription start site region 155474
Tssr155475 19 20492663 to 20492670 7 + TSS region transcription start site region 155475
Tssr155476 19 20492678 to 20492689 11 + TSS region transcription start site region 155476
Tssr155477 19 20492694 to 20492747 53 + TSS region transcription start site region 155477
E030003E18Rik 19 20492715 to 20556410 63695 + lncRNA gene RIKEN cDNA E030003E18 gene
Tssr155478 19 20492750 to 20492785 35 + TSS region transcription start site region 155478
Tssr155479 19 20493007 to 20493021 14 + TSS region transcription start site region 155479
Tssr155480 19 20493037 to 20493059 22 + TSS region transcription start site region 155480
Tssr5457 19 20520171 to 20520172 1 + TSS region transcription start site region 5457
C730002L08Rik 19 20534527 to 20552330 17803 - antisense lncRNA gene RIKEN cDNA C730002L08 gene
Tssr158561 19 20536747 to 20536763 16 - TSS region transcription start site region 158561
D19Mit60 19 20562164 to 20562299 135 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 60
Tlyr1 19 20562164 to 25336432 4774268 QTL thymic lymphoma resistance 1
Tgct2 19 20562299 to 3278551 -17283748 QTL testicular germ cell tumor 2
2900002J02Rik 19 20583523 to 20585066 1543 unclassified gene RIKEN cDNA 2900002J02 gene
Gm6684 19 20586073 to 20586757 684 - pseudogene predicted pseudogene 6684
Tssr155481 19 20601958 to 20601974 16 + TSS region transcription start site region 155481
Aldh1a1 19 20601982 to 20643462 41480 + protein coding gene aldehyde dehydrogenase family 1, subfamily A1
Tssr155482 19 20640054 to 20640086 32 + TSS region transcription start site region 155482
C730037M02Rik 19 20689466 to 20690526 1060 unclassified gene RIKEN cDNA C730037M02 gene
Aldh1a7 19 20692953 to 20727556 34603 - protein coding gene aldehyde dehydrogenase family 1, subfamily A7
Tssr158562 19 20727533 to 20727568 35 - TSS region transcription start site region 158562
Tmc1 19 20783458 to 20954202 170744 - protein coding gene transmembrane channel-like gene family 1
Tssr155483 19 20919149 to 20919175 26 + TSS region transcription start site region 155483
Gm32750 19 20941769 to 20954762 12993 + lncRNA gene predicted gene, 32750
Tssr158563 19 20954249 to 20954295 46 - TSS region transcription start site region 158563
Gm41817 19 20956541 to 20961920 5379 + lncRNA gene predicted gene, 41817
Tssr158564 19 20964401 to 20964408 7 - TSS region transcription start site region 158564
Tssr5458 19 20967809 to 20967829 20 + TSS region transcription start site region 5458
Tssr158565 19 21053677 to 21053713 36 - TSS region transcription start site region 158565
Tssr158566 19 21077874 to 21077880 6 - TSS region transcription start site region 158566
4930554I06Rik 19 21104710 to 21105538 828 + lncRNA gene RIKEN cDNA 4930554I06 gene
Gm3775 19 21121191 to 21125705 4514 - lncRNA gene predicted gene 3775
Gm32979 19 21138695 to 21146597 7902 + lncRNA gene predicted gene, 32979
Gm45918 19 21165087 to 21210686 45599 - lncRNA gene predicted gene, 45918
Tssr158567 19 21170864 to 21170869 5 - TSS region transcription start site region 158567
Tssr158568 19 21170925 to 21170939 14 - TSS region transcription start site region 158568
Tssr158569 19 21170949 to 21170956 7 - TSS region transcription start site region 158569
Tssr158570 19 21170964 to 21170994 30 - TSS region transcription start site region 158570
Tssr158571 19 21172488 to 21172514 26 - TSS region transcription start site region 158571
Tssr158572 19 21174851 to 21174860 9 - TSS region transcription start site region 158572
Tssr158573 19 21174872 to 21174883 11 - TSS region transcription start site region 158573
Tssr158574 19 21174884 to 21174905 21 - TSS region transcription start site region 158574
Cpgi10674 19 21271612 to 21273171 1559 CpG island CpG island 10674
Tssr155484 19 21271828 to 21271848 20 + TSS region transcription start site region 155484
Tssr155485 19 21271850 to 21271890 40 + TSS region transcription start site region 155485
Tssr155486 19 21272257 to 21272263 6 + TSS region transcription start site region 155486
Tssr155487 19 21272276 to 21272296 20 + TSS region transcription start site region 155487
Zfand5 19 21272278 to 21282289 10011 + protein coding gene zinc finger, AN1-type domain 5
Tssr155488 19 21272516 to 21272542 26 + TSS region transcription start site region 155488
Tssr155489 19 21274436 to 21274453 17 + TSS region transcription start site region 155489
Tssr155490 19 21275050 to 21275079 29 + TSS region transcription start site region 155490
Tssr155491 19 21276438 to 21276457 19 + TSS region transcription start site region 155491
Tssr155492 19 21276459 to 21276476 17 + TSS region transcription start site region 155492
Tssr155493 19 21277700 to 21277723 23 + TSS region transcription start site region 155493
Tssr155494 19 21278172 to 21278174 2 + TSS region transcription start site region 155494
1500002I01Rik 19 21293945 to 21295009 1064 unclassified gene RIKEN cDNA 1500002I01 gene
D19Mit14 19 21333416 to 21333564 148 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 14
Tssr155495 19 21377295 to 21377305 10 + TSS region transcription start site region 155495
Tssr158575 19 21383896 to 21383907 11 - TSS region transcription start site region 158575
Tssr158576 19 21384042 to 21384051 9 - TSS region transcription start site region 158576
Gda 19 21391307 to 21472661 81354 - protein coding gene guanine deaminase
Tssr155496 19 21396609 to 21396616 7 + TSS region transcription start site region 155496
Tssr155497 19 21396636 to 21396657 21 + TSS region transcription start site region 155497
Tssr155498 19 21419321 to 21419325 4 + TSS region transcription start site region 155498