Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:17555908-19785928

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcsk5 19 17432832 to 17837632 404800 - protein coding gene proprotein convertase subtilisin/kexin type 5
Gm41813 19 17536046 to 17555945 19899 + lncRNA gene predicted gene, 41813
Tssr158512 19 17560024 to 17560027 3 - TSS region transcription start site region 158512
Gm41812 19 17573784 to 17580645 6861 + lncRNA gene predicted gene, 41812
C430005N20Rik 19 17632558 to 17633490 932 unclassified gene RIKEN cDNA C430005N20 gene
Gm17819 19 17692776 to 17693534 758 + pseudogene predicted gene, 17819
Cpgi10665 19 17835798 to 17836270 472 CpG island CpG island 10665
Cpgi10666 19 17836493 to 17837865 1372 CpG island CpG island 10666
Tssr158513 19 17837620 to 17837642 22 - TSS region transcription start site region 158513
Gm22880 19 17865317 to 17865419 102 - snRNA gene predicted gene, 22880
Gm23063 19 17891959 to 17892051 92 - miRNA gene predicted gene, 23063
Tssr158514 19 17901196 to 17901198 2 - TSS region transcription start site region 158514
Tssr155441 19 17926552 to 17926555 3 + TSS region transcription start site region 155441
Eef1a1-ps1 19 17926557 to 17928613 2056 + pseudogene eukaryotic translation elongation factor 1 alpha 1, pseudogene 1
Gm23061 19 17928111 to 17928226 115 + miRNA gene predicted gene, 23061
D19Dcr77 19 17972361 to 17972456 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 77
D19Dcr78 19 18015254 to 18015349 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 78
Tssr5454 19 18063876 to 18063877 1 + TSS region transcription start site region 5454
Gm18610 19 18205166 to 18205795 629 - pseudogene predicted gene, 18610
D19Mit85 19 18529681 to 18529936 255 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 85
Rpl29-ps6 19 18565138 to 18565755 617 + pseudogene ribosomal protein L29, pseudogene 6
Tssr158515 19 18568036 to 18568041 5 - TSS region transcription start site region 158515
Ostf1 19 18580364 to 18631813 51449 - protein coding gene osteoclast stimulating factor 1
Tssr155442 19 18581429 to 18581439 10 + TSS region transcription start site region 155442
Gm8250 19 18581455 to 18582228 773 + pseudogene predicted gene 8250
Tssr158516 19 18589729 to 18589761 32 - TSS region transcription start site region 158516
Tssr158517 19 18596729 to 18596733 4 - TSS region transcription start site region 158517
1110034N17Rik 19 18627446 to 18627920 474 unclassified gene RIKEN cDNA 1110034N17 gene
Tssr158518 19 18630906 to 18630909 3 - TSS region transcription start site region 158518
Cpgi10667 19 18631180 to 18632224 1044 CpG island CpG island 10667
Tssr158519 19 18631748 to 18631753 5 - TSS region transcription start site region 158519
Tssr158520 19 18631754 to 18631824 70 - TSS region transcription start site region 158520
Tssr158521 19 18631834 to 18631847 13 - TSS region transcription start site region 158521
Tssr155443 19 18631927 to 18631963 36 + TSS region transcription start site region 155443
Nmrk1 19 18631950 to 18652194 20244 + protein coding gene nicotinamide riboside kinase 1
Tssr155444 19 18631979 to 18632008 29 + TSS region transcription start site region 155444
Cpgi10668 19 18670489 to 18671766 1277 CpG island CpG island 10668
Tssr155445 19 18670724 to 18670779 55 + TSS region transcription start site region 155445
Tssr155446 19 18670780 to 18670810 30 + TSS region transcription start site region 155446
Carnmt1 19 18670780 to 18704788 34008 + protein coding gene carnosine N-methyltransferase 1
Tssr155447 19 18670812 to 18670849 37 + TSS region transcription start site region 155447
Tssr155448 19 18670908 to 18670928 20 + TSS region transcription start site region 155448
Tssr5455 19 18670940 to 18670950 10 + TSS region transcription start site region 5455
Tssr155449 19 18671190 to 18671201 11 + TSS region transcription start site region 155449
Chab5 19 18676400 to 18676563 163 QTL cholesterol absorption 5
D19Mit41 19 18676400 to 18676563 163 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 41
Tssr155450 19 18681242 to 18681243 1 + TSS region transcription start site region 155450
4930447K04Rik 19 18705797 to 18707199 1402 unclassified gene RIKEN cDNA 4930447K04 gene
Cpgi10669 19 18712779 to 18713851 1072 CpG island CpG island 10669
Tssr155451 19 18713165 to 18713187 22 + TSS region transcription start site region 155451
Tssr155452 19 18713192 to 18713212 20 + TSS region transcription start site region 155452
D030056L22Rik 19 18713193 to 18718428 5235 + protein coding gene RIKEN cDNA D030056L22 gene
Tssr155453 19 18713225 to 18713243 18 + TSS region transcription start site region 155453
Tssr155454 19 18730612 to 18730617 5 + TSS region transcription start site region 155454
Tssr155455 19 18730630 to 18730649 19 + TSS region transcription start site region 155455
Tssr155456 19 18730658 to 18730689 31 + TSS region transcription start site region 155456
Tssr155457 19 18731429 to 18731440 11 + TSS region transcription start site region 155457
Tssr155458 19 18732740 to 18732743 3 + TSS region transcription start site region 155458
Gm23238 19 18732741 to 18732904 163 + snRNA gene predicted gene, 23238
Gm41814 19 18736739 to 18749516 12777 - lncRNA gene predicted gene, 41814
Tssr158522 19 18748515 to 18748519 4 - TSS region transcription start site region 158522
Cpgi10670 19 18749624 to 18750136 512 CpG island CpG island 10670
Tssr155459 19 18749724 to 18749743 19 + TSS region transcription start site region 155459
Tssr155460 19 18749745 to 18749768 23 + TSS region transcription start site region 155460
Trpm6 19 18749983 to 18892510 142527 + protein coding gene transient receptor potential cation channel, subfamily M, member 6
Tssr155461 19 18758607 to 18758645 38 + TSS region transcription start site region 155461
Tssr155462 19 18776172 to 18776182 10 + TSS region transcription start site region 155462
Gm24190 19 18776746 to 18776961 215 - unclassified non-coding RNA gene predicted gene, 24190
Tssr155463 19 18840606 to 18840618 12 + TSS region transcription start site region 155463
Tssr155464 19 18840640 to 18840649 9 + TSS region transcription start site region 155464
Tssr155465 19 18855668 to 18855672 4 + TSS region transcription start site region 155465
Tssr5456 19 18888089 to 18888093 4 + TSS region transcription start site region 5456
Rorb 19 18930609 to 19111196 180587 - protein coding gene RAR-related orphan receptor beta
Tssr158523 19 18936154 to 18936156 2 - TSS region transcription start site region 158523
Tssr158524 19 18936377 to 18936384 7 - TSS region transcription start site region 158524
Tssr158525 19 18936391 to 18936428 37 - TSS region transcription start site region 158525
Tssr158526 19 18936496 to 18936499 3 - TSS region transcription start site region 158526
Tssr158527 19 18936597 to 18936606 9 - TSS region transcription start site region 158527
Tssr158528 19 18936613 to 18936625 12 - TSS region transcription start site region 158528
Tssr158529 19 18936691 to 18936709 18 - TSS region transcription start site region 158529
Cpgi10671 19 18977636 to 18977980 344 CpG island CpG island 10671
Tssr158530 19 19001070 to 19001075 5 - TSS region transcription start site region 158530
Tssr158531 19 19001099 to 19001119 20 - TSS region transcription start site region 158531
Tssr158532 19 19001148 to 19001151 3 - TSS region transcription start site region 158532
Tssr158533 19 19005239 to 19005262 23 - TSS region transcription start site region 158533
Tssr158534 19 19032243 to 19032249 6 - TSS region transcription start site region 158534
Tssr158535 19 19035516 to 19035517 1 - TSS region transcription start site region 158535
Tssr158536 19 19050951 to 19050954 3 - TSS region transcription start site region 158536
Tssr158537 19 19067588 to 19067629 41 - TSS region transcription start site region 158537
Tssr158538 19 19079076 to 19079091 15 - TSS region transcription start site region 158538
Tssr158539 19 19079542 to 19079545 3 - TSS region transcription start site region 158539
Tssr158540 19 19099773 to 19099777 4 - TSS region transcription start site region 158540
Tssr158541 19 19100270 to 19100273 3 - TSS region transcription start site region 158541
Cpgi10672 19 19110061 to 19110818 757 CpG island CpG island 10672
Tssr158542 19 19110939 to 19110950 11 - TSS region transcription start site region 158542
Cpgi10673 19 19111065 to 19111633 568 CpG island CpG island 10673
Tssr158543 19 19111181 to 19111203 22 - TSS region transcription start site region 158543
Tssr158544 19 19111207 to 19111221 14 - TSS region transcription start site region 158544
Gm25437 19 19275899 to 19276030 131 + snoRNA gene predicted gene, 25437
Gm41815 19 19284543 to 19319645 35102 + lncRNA gene predicted gene, 41815
D19Mit113 19 19356373 to 19356514 141 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology-113