Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:17041959-18742051

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prune2 19 16956118 to 17223932 267814 + protein coding gene prune homolog 2
Gm27970 19 17056781 to 17057187 406 - unclassified non-coding RNA gene predicted gene, 27970
Gm27796 19 17060137 to 17060397 260 - unclassified non-coding RNA gene predicted gene, 27796
Tssr158489 19 17125428 to 17125479 51 - TSS region transcription start site region 158489
Tssr158490 19 17125521 to 17125542 21 - TSS region transcription start site region 158490
Tssr158491 19 17125584 to 17125598 14 - TSS region transcription start site region 158491
Tssr155419 19 17125618 to 17125670 52 + TSS region transcription start site region 155419
Tssr155420 19 17136744 to 17136781 37 + TSS region transcription start site region 155420
Tssr155421 19 17136808 to 17136819 11 + TSS region transcription start site region 155421
Tssr155422 19 17136833 to 17136838 5 + TSS region transcription start site region 155422
Tssr5453 19 17145555 to 17145559 4 + TSS region transcription start site region 5453
Cpgi10661 19 17163590 to 17163825 235 CpG island CpG island 10661
Tssr158492 19 17166444 to 17166486 42 - TSS region transcription start site region 158492
Tssr155423 19 17205531 to 17205542 11 + TSS region transcription start site region 155423
Tssr155424 19 17222476 to 17222488 12 + TSS region transcription start site region 155424
Tssr155425 19 17222573 to 17222589 16 + TSS region transcription start site region 155425
Tssr155426 19 17222651 to 17222654 3 + TSS region transcription start site region 155426
Tssr155427 19 17222731 to 17222732 1 + TSS region transcription start site region 155427
D19Mit128 19 17250645 to 17250768 123 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 128
D19Mit129 19 17252156 to 17252270 114 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 129
Tssr158493 19 17278452 to 17278466 14 - TSS region transcription start site region 158493
Gcnt1 19 17326141 to 17356667 30526 - protein coding gene glucosaminyl (N-acetyl) transferase 1, core 2
Tssr158494 19 17326959 to 17326963 4 - TSS region transcription start site region 158494
Tssr158495 19 17327786 to 17327789 3 - TSS region transcription start site region 158495
Tssr158496 19 17339542 to 17339562 20 - TSS region transcription start site region 158496
Tssr158497 19 17339663 to 17339676 13 - TSS region transcription start site region 158497
Tssr158498 19 17339688 to 17339738 50 - TSS region transcription start site region 158498
Tssr158499 19 17342034 to 17342053 19 - TSS region transcription start site region 158499
Tssr158500 19 17342058 to 17342073 15 - TSS region transcription start site region 158500
Tssr155428 19 17354977 to 17354988 11 + TSS region transcription start site region 155428
Cpgi10662 19 17356086 to 17356793 707 CpG island CpG island 10662
Tssr158501 19 17356608 to 17356624 16 - TSS region transcription start site region 158501
Tssr158502 19 17356631 to 17356636 5 - TSS region transcription start site region 158502
Tssr155429 19 17370062 to 17370103 41 + TSS region transcription start site region 155429
Tssr158503 19 17372249 to 17372252 3 - TSS region transcription start site region 158503
Tssr158504 19 17372836 to 17372850 14 - TSS region transcription start site region 158504
Tssr158505 19 17372864 to 17372875 11 - TSS region transcription start site region 158505
Tssr158506 19 17372915 to 17372926 11 - TSS region transcription start site region 158506
Cpgi10663 19 17393616 to 17394640 1024 CpG island CpG island 10663
Tssr155430 19 17394037 to 17394091 54 + TSS region transcription start site region 155430
Rfk 19 17394043 to 17401349 7306 + protein coding gene riboflavin kinase
Tssr155431 19 17394096 to 17394122 26 + TSS region transcription start site region 155431
Tssr158507 19 17394469 to 17394485 16 - TSS region transcription start site region 158507
Tssr158508 19 17394490 to 17394516 26 - TSS region transcription start site region 158508
Tssr158509 19 17394518 to 17394531 13 - TSS region transcription start site region 158509
Tssr155432 19 17394790 to 17394840 50 + TSS region transcription start site region 155432
Tssr155433 19 17395029 to 17395037 8 + TSS region transcription start site region 155433
Tssr155434 19 17399608 to 17399622 14 + TSS region transcription start site region 155434
Tssr155435 19 17400183 to 17400199 16 + TSS region transcription start site region 155435
Tssr155436 19 17400236 to 17400290 54 + TSS region transcription start site region 155436
Tssr155437 19 17400542 to 17400546 4 + TSS region transcription start site region 155437
Tssr155438 19 17401118 to 17401122 4 + TSS region transcription start site region 155438
Pcsk5 19 17432832 to 17837632 404800 - protein coding gene proprotein convertase subtilisin/kexin type 5
Cpgi10664 19 17433419 to 17433732 313 CpG island CpG island 10664
Tssr155439 19 17479678 to 17479691 13 + TSS region transcription start site region 155439
D19Dcr4 19 17498562 to 17498662 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 4
Tssr158510 19 17511395 to 17511411 16 - TSS region transcription start site region 158510
Tssr158511 19 17511415 to 17511420 5 - TSS region transcription start site region 158511
Tssr155440 19 17517270 to 17517275 5 + TSS region transcription start site region 155440
D19Dcr5 19 17533129 to 17533224 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 5
Gm41813 19 17536046 to 17555945 19899 + lncRNA gene predicted gene, 41813
Tssr158512 19 17560024 to 17560027 3 - TSS region transcription start site region 158512
Gm41812 19 17573784 to 17580645 6861 + lncRNA gene predicted gene, 41812
C430005N20Rik 19 17632558 to 17633490 932 unclassified gene RIKEN cDNA C430005N20 gene
Gm17819 19 17692776 to 17693534 758 + pseudogene predicted gene, 17819
Cpgi10665 19 17835798 to 17836270 472 CpG island CpG island 10665
Cpgi10666 19 17836493 to 17837865 1372 CpG island CpG island 10666
Tssr158513 19 17837620 to 17837642 22 - TSS region transcription start site region 158513
Gm22880 19 17865317 to 17865419 102 - snRNA gene predicted gene, 22880
Gm23063 19 17891959 to 17892051 92 - miRNA gene predicted gene, 23063
Tssr158514 19 17901196 to 17901198 2 - TSS region transcription start site region 158514
Tssr155441 19 17926552 to 17926555 3 + TSS region transcription start site region 155441
Eef1a1-ps1 19 17926557 to 17928613 2056 + pseudogene eukaryotic translation elongation factor 1 alpha 1, pseudogene 1
Gm23061 19 17928111 to 17928226 115 + miRNA gene predicted gene, 23061
D19Dcr77 19 17972361 to 17972456 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 77
D19Dcr78 19 18015254 to 18015349 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 78
Tssr5454 19 18063876 to 18063877 1 + TSS region transcription start site region 5454
Gm18610 19 18205166 to 18205795 629 - pseudogene predicted gene, 18610
D19Mit85 19 18529681 to 18529936 255 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 85
Rpl29-ps6 19 18565138 to 18565755 617 + pseudogene ribosomal protein L29, pseudogene 6
Tssr158515 19 18568036 to 18568041 5 - TSS region transcription start site region 158515
Ostf1 19 18580364 to 18631813 51449 - protein coding gene osteoclast stimulating factor 1
Tssr155442 19 18581429 to 18581439 10 + TSS region transcription start site region 155442
Gm8250 19 18581455 to 18582228 773 + pseudogene predicted gene 8250
Tssr158516 19 18589729 to 18589761 32 - TSS region transcription start site region 158516
Tssr158517 19 18596729 to 18596733 4 - TSS region transcription start site region 158517
1110034N17Rik 19 18627446 to 18627920 474 unclassified gene RIKEN cDNA 1110034N17 gene
Tssr158518 19 18630906 to 18630909 3 - TSS region transcription start site region 158518
Cpgi10667 19 18631180 to 18632224 1044 CpG island CpG island 10667
Tssr158519 19 18631748 to 18631753 5 - TSS region transcription start site region 158519
Tssr158520 19 18631754 to 18631824 70 - TSS region transcription start site region 158520
Tssr158521 19 18631834 to 18631847 13 - TSS region transcription start site region 158521
Tssr155443 19 18631927 to 18631963 36 + TSS region transcription start site region 155443
Nmrk1 19 18631950 to 18652194 20244 + protein coding gene nicotinamide riboside kinase 1
Tssr155444 19 18631979 to 18632008 29 + TSS region transcription start site region 155444
Cpgi10668 19 18670489 to 18671766 1277 CpG island CpG island 10668
Tssr155445 19 18670724 to 18670779 55 + TSS region transcription start site region 155445
Carnmt1 19 18670780 to 18704788 34008 + protein coding gene carnosine N-methyltransferase 1
Tssr155446 19 18670780 to 18670810 30 + TSS region transcription start site region 155446
Tssr155447 19 18670812 to 18670849 37 + TSS region transcription start site region 155447
Tssr155448 19 18670908 to 18670928 20 + TSS region transcription start site region 155448
Tssr5455 19 18670940 to 18670950 10 + TSS region transcription start site region 5455
Tssr155449 19 18671190 to 18671201 11 + TSS region transcription start site region 155449
Chab5 19 18676400 to 18676563 163 QTL cholesterol absorption 5
D19Mit41 19 18676400 to 18676563 163 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 41
Tssr155450 19 18681242 to 18681243 1 + TSS region transcription start site region 155450
4930447K04Rik 19 18705797 to 18707199 1402 unclassified gene RIKEN cDNA 4930447K04 gene
Cpgi10669 19 18712779 to 18713851 1072 CpG island CpG island 10669
Tssr155451 19 18713165 to 18713187 22 + TSS region transcription start site region 155451
Tssr155452 19 18713192 to 18713212 20 + TSS region transcription start site region 155452
D030056L22Rik 19 18713193 to 18718428 5235 + protein coding gene RIKEN cDNA D030056L22 gene
Tssr155453 19 18713225 to 18713243 18 + TSS region transcription start site region 155453
Tssr155454 19 18730612 to 18730617 5 + TSS region transcription start site region 155454
Tssr155455 19 18730630 to 18730649 19 + TSS region transcription start site region 155455
Tssr155456 19 18730658 to 18730689 31 + TSS region transcription start site region 155456
Tssr155457 19 18731429 to 18731440 11 + TSS region transcription start site region 155457
Tssr155458 19 18732740 to 18732743 3 + TSS region transcription start site region 155458
Gm23238 19 18732741 to 18732904 163 + snRNA gene predicted gene, 23238
Gm41814 19 18736739 to 18749516 12777 - lncRNA gene predicted gene, 41814