Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:16201453-17261456

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gnaq 19 16132831 to 16387453 254622 + protein coding gene guanine nucleotide binding protein, alpha q polypeptide
Tssr155389 19 16225191 to 16225198 7 + TSS region transcription start site region 155389
Tssr155390 19 16226954 to 16226964 10 + TSS region transcription start site region 155390
Gm10819 19 16267061 to 16267621 560 - pseudogene predicted gene 10819
Tssr158479 19 16267635 to 16267643 8 - TSS region transcription start site region 158479
Gm17068 19 16277797 to 16278776 979 + pseudogene predicted gene 17068
Mir496b 19 16314892 to 16315004 112 - miRNA gene microRNA 496b
Tssr155391 19 16315762 to 16315775 13 + TSS region transcription start site region 155391
Tssr155392 19 16318052 to 16318078 26 + TSS region transcription start site region 155392
Tssr155393 19 16318410 to 16318429 19 + TSS region transcription start site region 155393
Tssr155394 19 16320534 to 16320553 19 + TSS region transcription start site region 155394
Tssr155395 19 16328626 to 16328637 11 + TSS region transcription start site region 155395
Tssr155396 19 16349523 to 16349537 14 + TSS region transcription start site region 155396
Tssr155397 19 16349546 to 16349565 19 + TSS region transcription start site region 155397
Tssr155398 19 16349613 to 16349630 17 + TSS region transcription start site region 155398
Tssr155399 19 16359301 to 16359320 19 + TSS region transcription start site region 155399
Tssr155400 19 16383615 to 16383630 15 + TSS region transcription start site region 155400
Tssr155401 19 16384290 to 16384302 12 + TSS region transcription start site region 155401
Tssr155402 19 16384855 to 16384871 16 + TSS region transcription start site region 155402
Tssr155403 19 16385679 to 16385694 15 + TSS region transcription start site region 155403
Tssr155404 19 16385738 to 16385752 14 + TSS region transcription start site region 155404
Tssr155405 19 16385791 to 16385806 15 + TSS region transcription start site region 155405
Tssr155406 19 16385865 to 16385875 10 + TSS region transcription start site region 155406
Tssr155407 19 16385924 to 16385944 20 + TSS region transcription start site region 155407
Tssr155408 19 16385951 to 16385967 16 + TSS region transcription start site region 155408
Tssr158480 19 16386109 to 16386122 13 - TSS region transcription start site region 158480
Tssr155409 19 16387231 to 16387267 36 + TSS region transcription start site region 155409
Gm19312 19 16413431 to 16414000 569 + pseudogene predicted gene, 19312
Tssr155410 19 16435616 to 16435630 14 + TSS region transcription start site region 155410
Gna14 19 16435667 to 16610818 175151 + protein coding gene guanine nucleotide binding protein, alpha 14
Cpgi10652 19 16435738 to 16437010 1272 CpG island CpG island 10652
Tssr155411 19 16436195 to 16436209 14 + TSS region transcription start site region 155411
Gm8222 19 16477107 to 16491122 14015 - pseudogene predicted gene 8222
Gm41811 19 16580085 to 16583462 3377 - lncRNA gene predicted gene, 41811
E230008J23Rik 19 16612195 to 16614868 2673 unclassified gene RIKEN cDNA E230008J23 gene
Vps13a 19 16615366 to 16780933 165567 - protein coding gene vacuolar protein sorting 13A
Tssr158481 19 16657781 to 16657785 4 - TSS region transcription start site region 158481
Gm32256 19 16715799 to 16716261 462 + pseudogene predicted gene, 32256
Tssr158482 19 16731453 to 16731456 3 - TSS region transcription start site region 158482
Cpgi10653 19 16780112 to 16781412 1300 CpG island CpG island 10653
Gm9806 19 16780547 to 16781103 556 + pseudogene predicted gene 9806
Tssr158483 19 16780826 to 16780835 9 - TSS region transcription start site region 158483
Tssr158484 19 16780872 to 16780897 25 - TSS region transcription start site region 158484
Tssr158485 19 16780903 to 16780967 64 - TSS region transcription start site region 158485
Tssr158486 19 16780979 to 16780990 11 - TSS region transcription start site region 158486
Tssr158487 19 16781065 to 16781075 10 - TSS region transcription start site region 158487
Tssr158488 19 16781096 to 16781107 11 - TSS region transcription start site region 158488
Tssr155412 19 16781111 to 16781120 9 + TSS region transcription start site region 155412
Cpgi10654 19 16808758 to 16809103 345 CpG island CpG island 10654
Cpgi10655 19 16870410 to 16870766 356 CpG island CpG island 10655
Cpgi10656 19 16871269 to 16871504 235 CpG island CpG island 10656
Cpgi10657 19 16872239 to 16873740 1501 CpG island CpG island 10657
Foxb2 19 16872316 to 16873830 1514 - protein coding gene forkhead box B2
Cpgi10658 19 16874111 to 16874873 762 CpG island CpG island 10658
Cpgi10659 19 16876235 to 16876757 522 CpG island CpG island 10659
Acigg12 19 16881461 to 16881461 0 QTL anti COL7 IgG3 antibody 12
Gm32341 19 16919543 to 16925008 5465 + lncRNA gene predicted gene, 32341
Tssr155413 19 16919638 to 16919653 15 + TSS region transcription start site region 155413
Tssr155414 19 16955687 to 16955701 14 + TSS region transcription start site region 155414
Cpgi10660 19 16955697 to 16956369 672 CpG island CpG island 10660
Tssr155415 19 16955960 to 16955980 20 + TSS region transcription start site region 155415
Tssr155416 19 16956064 to 16956075 11 + TSS region transcription start site region 155416
Tssr155417 19 16956110 to 16956124 14 + TSS region transcription start site region 155417
Prune2 19 16956118 to 17223932 267814 + protein coding gene prune homolog 2
Tssr155418 19 16956164 to 16956171 7 + TSS region transcription start site region 155418
Gm27970 19 17056781 to 17057187 406 - unclassified non-coding RNA gene predicted gene, 27970
Gm27796 19 17060137 to 17060397 260 - unclassified non-coding RNA gene predicted gene, 27796
Tssr158489 19 17125428 to 17125479 51 - TSS region transcription start site region 158489
Tssr158490 19 17125521 to 17125542 21 - TSS region transcription start site region 158490
Tssr158491 19 17125584 to 17125598 14 - TSS region transcription start site region 158491
Tssr155419 19 17125618 to 17125670 52 + TSS region transcription start site region 155419
Tssr155420 19 17136744 to 17136781 37 + TSS region transcription start site region 155420
Tssr155421 19 17136808 to 17136819 11 + TSS region transcription start site region 155421
Tssr155422 19 17136833 to 17136838 5 + TSS region transcription start site region 155422
Tssr5453 19 17145555 to 17145559 4 + TSS region transcription start site region 5453
Cpgi10661 19 17163590 to 17163825 235 CpG island CpG island 10661
Tssr158492 19 17166444 to 17166486 42 - TSS region transcription start site region 158492
Tssr155423 19 17205531 to 17205542 11 + TSS region transcription start site region 155423
Tssr155424 19 17222476 to 17222488 12 + TSS region transcription start site region 155424
Tssr155425 19 17222573 to 17222589 16 + TSS region transcription start site region 155425
Tssr155426 19 17222651 to 17222654 3 + TSS region transcription start site region 155426
Tssr155427 19 17222731 to 17222732 1 + TSS region transcription start site region 155427
D19Mit128 19 17250645 to 17250768 123 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 128
D19Mit129 19 17252156 to 17252270 114 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 129