Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:12516771-12846915

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31208 19 12517921 to 12524338 6417 - lncRNA gene predicted gene, 31208
Gm47243 19 12519800 to 12523576 3776 + lincRNA gene predicted gene, 47243
Tssr158434 19 12526381 to 12526392 11 - TSS region transcription start site region 158434
Tssr158435 19 12526423 to 12526441 18 - TSS region transcription start site region 158435
Tssr158436 19 12527095 to 12527104 9 - TSS region transcription start site region 158436
Tssr158437 19 12527543 to 12527558 15 - TSS region transcription start site region 158437
Tssr158438 19 12527559 to 12527577 18 - TSS region transcription start site region 158438
Tssr158439 19 12528202 to 12528216 14 - TSS region transcription start site region 158439
Gm6545 19 12528763 to 12530519 1756 - pseudogene predicted gene 6545
Tssr158440 19 12531930 to 12531980 50 - TSS region transcription start site region 158440
Gm47242 19 12539588 to 12540823 1235 - lincRNA gene predicted gene, 47242
Tssr158441 19 12540749 to 12540760 11 - TSS region transcription start site region 158441
Tssr158442 19 12540785 to 12540794 9 - TSS region transcription start site region 158442
Tssr158443 19 12540815 to 12540831 16 - TSS region transcription start site region 158443
Tssr155334 19 12564463 to 12564490 27 + TSS region transcription start site region 155334
Tssr155335 19 12564492 to 12564508 16 + TSS region transcription start site region 155335
Tssr155336 19 12564524 to 12564541 17 + TSS region transcription start site region 155336
Gm16274 19 12568235 to 12568826 591 - pseudogene predicted gene 16274
Fam111a 19 12573072 to 12589769 16697 + protein coding gene family with sequence similarity 111, member A
Tssr155337 19 12573508 to 12573542 34 + TSS region transcription start site region 155337
Tssr158444 19 12574226 to 12574252 26 - TSS region transcription start site region 158444
Tssr155338 19 12574397 to 12574402 5 + TSS region transcription start site region 155338
Tssr155339 19 12585864 to 12585868 4 + TSS region transcription start site region 155339
A330040F15Rik 19 12585868 to 12596566 10698 - lncRNA gene RIKEN cDNA A330040F15 gene
Cpgi10643 19 12595616 to 12596663 1047 CpG island CpG island 10643
Tssr155340 19 12595686 to 12595701 15 + TSS region transcription start site region 155340
Tssr155341 19 12595717 to 12595751 34 + TSS region transcription start site region 155341
4122401K19Rik 19 12595748 to 12598308 2560 unclassified non-coding RNA gene RIKEN cDNA 4122401K19 gene
Tssr155342 19 12595763 to 12595784 21 + TSS region transcription start site region 155342
D19Mit79 19 12597623 to 12597757 134 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 79
Tssr155343 19 12599928 to 12599939 11 + TSS region transcription start site region 155343
Tssr155344 19 12599953 to 12600010 57 + TSS region transcription start site region 155344
Gm4952 19 12599984 to 12627616 27632 + protein coding gene predicted gene 4952
Tssr155345 19 12600044 to 12600051 7 + TSS region transcription start site region 155345
Tssr155346 19 12625425 to 12625426 1 + TSS region transcription start site region 155346
Tssr155347 19 12627657 to 12627666 9 + TSS region transcription start site region 155347
Tssr155348 19 12633303 to 12633325 22 + TSS region transcription start site region 155348
Glyat 19 12633308 to 12651737 18429 + protein coding gene glycine-N-acyltransferase
Tssr155349 19 12633329 to 12633352 23 + TSS region transcription start site region 155349
Tssr155350 19 12633356 to 12633369 13 + TSS region transcription start site region 155350
Tssr155351 19 12633507 to 12633525 18 + TSS region transcription start site region 155351
Tssr155352 19 12654962 to 12654967 5 + TSS region transcription start site region 155352
Gm24521 19 12665255 to 12665361 106 + snRNA gene predicted gene, 24521
Olfr1442 19 12674179 to 12675243 1064 + protein coding gene olfactory receptor 1442
Olfr1443 19 12678166 to 12683851 5685 + protein coding gene olfactory receptor 1443
Gm49772 19 12681771 to 12681915 144 + pseudogene predicted gene, 49772
Tssr155353 19 12695783 to 12695809 26 + TSS region transcription start site region 155353
Keg1 19 12695790 to 12719902 24112 + protein coding gene kidney expressed gene 1
Tssr155354 19 12700107 to 12700117 10 + TSS region transcription start site region 155354
Gm15962 19 12706055 to 12721247 15192 - antisense lncRNA gene predicted gene 15962
Gm18543 19 12713227 to 12713948 721 - pseudogene predicted gene, 18543
Gm44505 19 12763528 to 12796123 32595 - lncRNA gene predicted readthrough transcript (NMD candidate), 44505
Cntf 19 12763660 to 12765632 1972 - protein coding gene ciliary neurotrophic factor
Tssr158445 19 12765418 to 12765443 25 - TSS region transcription start site region 158445
Tssr158446 19 12765447 to 12765485 38 - TSS region transcription start site region 158446
Zfp91 19 12766939 to 12796123 29184 - protein coding gene zinc finger protein 91
Tssr158447 19 12767754 to 12767758 4 - TSS region transcription start site region 158447
Tssr158448 19 12792160 to 12792163 3 - TSS region transcription start site region 158448
Cpgi10644 19 12794614 to 12796783 2169 CpG island CpG island 10644
Tssr155355 19 12794961 to 12795000 39 + TSS region transcription start site region 155355
Tssr158449 19 12795014 to 12795050 36 - TSS region transcription start site region 158449
Tssr158450 19 12795366 to 12795377 11 - TSS region transcription start site region 158450
Tssr158451 19 12795424 to 12795465 41 - TSS region transcription start site region 158451
Tssr158452 19 12795481 to 12795497 16 - TSS region transcription start site region 158452
Tssr158453 19 12795516 to 12795567 51 - TSS region transcription start site region 158453
Tssr155356 19 12795722 to 12795732 10 + TSS region transcription start site region 155356
Tssr155357 19 12795868 to 12795897 29 + TSS region transcription start site region 155357
Tssr155358 19 12795898 to 12795911 13 + TSS region transcription start site region 155358
Tssr158454 19 12796108 to 12796146 38 - TSS region transcription start site region 158454
Tssr158455 19 12796554 to 12796568 14 - TSS region transcription start site region 158455
Tssr158456 19 12796574 to 12796605 31 - TSS region transcription start site region 158456
Tssr155359 19 12798574 to 12798589 15 + TSS region transcription start site region 155359
Lpxn 19 12798606 to 12833807 35201 + protein coding gene leupaxin
Tssr155360 19 12798624 to 12798636 12 + TSS region transcription start site region 155360
Tssr155361 19 12801360 to 12801374 14 + TSS region transcription start site region 155361
Tssr155362 19 12804709 to 12804720 11 + TSS region transcription start site region 155362
Tssr155363 19 12804858 to 12804874 16 + TSS region transcription start site region 155363
Tssr155364 19 12804876 to 12804887 11 + TSS region transcription start site region 155364
Tssr155365 19 12805288 to 12805335 47 + TSS region transcription start site region 155365
Tssr155366 19 12805348 to 12805380 32 + TSS region transcription start site region 155366
Tssr155367 19 12806200 to 12806231 31 + TSS region transcription start site region 155367
Tssr155368 19 12827957 to 12827971 14 + TSS region transcription start site region 155368
Tssr155369 19 12846774 to 12846781 7 + TSS region transcription start site region 155369
Gm5244 19 12846804 to 12847248 444 + pseudogene predicted pseudogene 5244