Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:12004853-12864864

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183 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10639 19 12005469 to 12005674 205 CpG island CpG island 10639
n-TKctt29 19 12006039 to 12006111 72 + tRNA gene nuclear encoded tRNA lysine 29 (anticodon TTT)
n-TFgaa2 19 12008545 to 12008617 72 + tRNA gene nuclear encoded tRNA pheylalanine 2 (anticodon GAA)
n-TKctt30 19 12009696 to 12009768 72 - tRNA gene nuclear encoded tRNA lysine 30 (anticodon TTT)
Gm31151 19 12010115 to 12018404 8289 + lncRNA gene predicted gene, 31151
Cpgi10640 19 12010150 to 12010750 600 CpG island CpG island 10640
Tssr155307 19 12010523 to 12010534 11 + TSS region transcription start site region 155307
n-TLtaa4 19 12011086 to 12011168 82 - tRNA gene nuclear encoded tRNA leucine 4 (anticodon TAA)
n-TRtct1 19 12011588 to 12011673 85 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon TCT)
Cpgi10641 19 12011597 to 12012005 408 CpG island CpG island 10641
n-TVtac1 19 12011931 to 12012003 72 + tRNA gene nuclear encoded tRNA valine 1 (anticodon TAC)
n-TVtac2 19 12012266 to 12012338 72 + tRNA gene nuclear encoded tRNA valine 2 (anticodon TAC)
Olfr1421-ps1 19 12020175 to 12020382 207 + pseudogene olfactory receptor 1421, pseudogene 1
Gm45115 19 12020505 to 12020562 57 - pseudogene predicted gene 45115
Olfr1422-ps1 19 12021055 to 12021763 708 - pseudogene olfactory receptor 1422, pseudogene 1
Gm45116 19 12026646 to 12026920 274 - pseudogene predicted gene 45116
Olfr1423 19 12035808 to 12036740 932 - protein coding gene olfactory receptor 1423
Gm44859 19 12037731 to 12037824 93 + pseudogene predicted gene 44859
Olfr1424 19 12058809 to 12059750 941 - protein coding gene olfactory receptor 1424
Olfr1425 19 12073695 to 12074630 935 - protein coding gene olfactory receptor 1425
Tssr5449 19 12076028 to 12076029 1 + TSS region transcription start site region 5449
Olfr1426 19 12087610 to 12091847 4237 - protein coding gene olfactory receptor 1426
Olfr1427 19 12098702 to 12099637 935 - protein coding gene olfactory receptor 1427
Olfr1428 19 12108600 to 12115828 7228 - protein coding gene olfactory receptor 1428
Olfr76 19 12119721 to 12120674 953 - protein coding gene olfactory receptor 76
Olfr1529-ps1 19 12166137 to 12239303 73166 pseudogene olfactory receptor 1529, pseudogene 1
Olfr1555-ps1 19 12166687 to 12167103 416 - pseudogene olfactory receptor 1555, pseudogene 1
Olfr1430-ps1 19 12177610 to 12178523 913 - pseudogene olfactory receptor 1430, pseudogene 1
Olfr1431 19 12209568 to 12210506 938 + protein coding gene olfactory receptor 1431
Olfr1432 19 12228519 to 12229562 1043 - protein coding gene olfactory receptor 1432
Olfr262 19 12240721 to 12241659 938 - protein coding gene olfactory receptor 262
Gm26864 19 12247491 to 12247646 155 - pseudogene predicted gene, 26864
Olfr235 19 12268232 to 12269170 938 + protein coding gene olfactory receptor 235
Gm17802 19 12273381 to 12275157 1776 + pseudogene predicted gene, 17802
Olfr1434 19 12279854 to 12283988 4134 + protein coding gene olfactory receptor 1434
Olfr1435-ps1 19 12290058 to 12290306 248 - pseudogene olfactory receptor 1435, pseudogene 1
Olfr1436 19 12298183 to 12299130 947 - protein coding gene olfactory receptor 1436
Gm44858 19 12314874 to 12315027 153 - pseudogene predicted gene 44858
Olfr1437 19 12321887 to 12325066 3179 - protein coding gene olfactory receptor 1437
Olfr1438-ps1 19 12332895 to 12333854 959 - pseudogene olfactory receptor 1438, pseudogene 1
Olfr1439-ps1 19 12340495 to 12341142 647 - pseudogene olfactory receptor 1439, pseudogene 1
Olfr1440 19 12387304 to 12395212 7908 + protein coding gene olfactory receptor 1440
Olfr1441 19 12422311 to 12423267 956 + protein coding gene olfactory receptor 1441
Tssr155308 19 12427904 to 12427928 24 + TSS region transcription start site region 155308
Pfpl 19 12427905 to 12432110 4205 + protein coding gene pore forming protein-like
Tssr158410 19 12434853 to 12434864 11 - TSS region transcription start site region 158410
Tssr155309 19 12435195 to 12435215 20 + TSS region transcription start site region 155309
Tssr158411 19 12436028 to 12436044 16 - TSS region transcription start site region 158411
Tssr158412 19 12436046 to 12436059 13 - TSS region transcription start site region 158412
Tssr155310 19 12436323 to 12436331 8 + TSS region transcription start site region 155310
Tssr155311 19 12436391 to 12436410 19 + TSS region transcription start site region 155311
Tssr155312 19 12440347 to 12440361 14 + TSS region transcription start site region 155312
Tssr155313 19 12440401 to 12440416 15 + TSS region transcription start site region 155313
Tssr155314 19 12442781 to 12442793 12 + TSS region transcription start site region 155314
Tssr155315 19 12442794 to 12442808 14 + TSS region transcription start site region 155315
Tssr155316 19 12442813 to 12442827 14 + TSS region transcription start site region 155316
Tssr155317 19 12442833 to 12442841 8 + TSS region transcription start site region 155317
Tssr155318 19 12457899 to 12457917 18 + TSS region transcription start site region 155318
Tssr155319 19 12460749 to 12460783 34 + TSS region transcription start site region 155319
Mpeg1 19 12460779 to 12465284 4505 + protein coding gene macrophage expressed gene 1
Tssr155320 19 12460785 to 12460796 11 + TSS region transcription start site region 155320
Tssr155321 19 12460809 to 12460825 16 + TSS region transcription start site region 155321
Tssr155322 19 12461032 to 12461043 11 + TSS region transcription start site region 155322
Tssr155323 19 12461089 to 12461101 12 + TSS region transcription start site region 155323
Tssr155324 19 12461110 to 12461160 50 + TSS region transcription start site region 155324
Tssr155325 19 12461172 to 12461183 11 + TSS region transcription start site region 155325
Tssr158413 19 12461710 to 12461773 63 - TSS region transcription start site region 158413
Tssr158414 19 12463786 to 12463809 23 - TSS region transcription start site region 158414
Tssr158415 19 12463836 to 12463854 18 - TSS region transcription start site region 158415
Tssr158416 19 12464289 to 12464298 9 - TSS region transcription start site region 158416
Tssr155326 19 12464807 to 12464818 11 + TSS region transcription start site region 155326
Tssr155327 19 12464902 to 12464906 4 + TSS region transcription start site region 155327
Tssr155328 19 12464937 to 12464950 13 + TSS region transcription start site region 155328
Tssr158417 19 12465273 to 12465277 4 - TSS region transcription start site region 158417
Tssr155329 19 12465741 to 12465761 20 + TSS region transcription start site region 155329
Tssr155330 19 12465804 to 12465815 11 + TSS region transcription start site region 155330
Tssr155331 19 12465841 to 12465856 15 + TSS region transcription start site region 155331
Tssr155332 19 12465858 to 12465876 18 + TSS region transcription start site region 155332
Dtx4 19 12466341 to 12501996 35655 - protein coding gene deltex 4, E3 ubiquitin ligase
Tssr158418 19 12469060 to 12469065 5 - TSS region transcription start site region 158418
Tssr158419 19 12473324 to 12473348 24 - TSS region transcription start site region 158419
Tssr158420 19 12473424 to 12473433 9 - TSS region transcription start site region 158420
Tssr158421 19 12476966 to 12476979 13 - TSS region transcription start site region 158421
Tssr158422 19 12487040 to 12487060 20 - TSS region transcription start site region 158422
Tssr158423 19 12491938 to 12491983 45 - TSS region transcription start site region 158423
Cpgi10642 19 12500806 to 12502226 1420 CpG island CpG island 10642
Tssr155333 19 12501178 to 12501198 20 + TSS region transcription start site region 155333
Tssr158424 19 12501440 to 12501454 14 - TSS region transcription start site region 158424
Tssr158425 19 12501478 to 12501505 27 - TSS region transcription start site region 158425
Tssr158426 19 12501547 to 12501630 83 - TSS region transcription start site region 158426
Tssr158427 19 12501633 to 12501672 39 - TSS region transcription start site region 158427
Tssr158428 19 12501813 to 12501822 9 - TSS region transcription start site region 158428
Tssr158429 19 12501836 to 12501847 11 - TSS region transcription start site region 158429
Tssr158430 19 12501849 to 12501871 22 - TSS region transcription start site region 158430
Tssr158431 19 12501902 to 12501931 29 - TSS region transcription start site region 158431
Tssr158432 19 12501935 to 12501973 38 - TSS region transcription start site region 158432
Tssr5450 19 12502064 to 12502079 15 - TSS region transcription start site region 5450
Tssr158433 19 12502082 to 12502152 70 - TSS region transcription start site region 158433
Gm31208 19 12517921 to 12524338 6417 - lncRNA gene predicted gene, 31208
Gm47243 19 12519800 to 12523576 3776 + lincRNA gene predicted gene, 47243
Tssr158434 19 12526381 to 12526392 11 - TSS region transcription start site region 158434
Tssr158435 19 12526423 to 12526441 18 - TSS region transcription start site region 158435
Tssr158436 19 12527095 to 12527104 9 - TSS region transcription start site region 158436
Tssr158437 19 12527543 to 12527558 15 - TSS region transcription start site region 158437
Tssr158438 19 12527559 to 12527577 18 - TSS region transcription start site region 158438
Tssr158439 19 12528202 to 12528216 14 - TSS region transcription start site region 158439
Gm6545 19 12528763 to 12530519 1756 - pseudogene predicted gene 6545
Tssr158440 19 12531930 to 12531980 50 - TSS region transcription start site region 158440
Gm47242 19 12539588 to 12540823 1235 - lincRNA gene predicted gene, 47242
Tssr158441 19 12540749 to 12540760 11 - TSS region transcription start site region 158441
Tssr158442 19 12540785 to 12540794 9 - TSS region transcription start site region 158442
Tssr158443 19 12540815 to 12540831 16 - TSS region transcription start site region 158443
Tssr155334 19 12564463 to 12564490 27 + TSS region transcription start site region 155334
Tssr155335 19 12564492 to 12564508 16 + TSS region transcription start site region 155335
Tssr155336 19 12564524 to 12564541 17 + TSS region transcription start site region 155336
Gm16274 19 12568235 to 12568826 591 - pseudogene predicted gene 16274
Fam111a 19 12573072 to 12589769 16697 + protein coding gene family with sequence similarity 111, member A
Tssr155337 19 12573508 to 12573542 34 + TSS region transcription start site region 155337
Tssr158444 19 12574226 to 12574252 26 - TSS region transcription start site region 158444
Tssr155338 19 12574397 to 12574402 5 + TSS region transcription start site region 155338
Tssr155339 19 12585864 to 12585868 4 + TSS region transcription start site region 155339
A330040F15Rik 19 12585868 to 12596566 10698 - lncRNA gene RIKEN cDNA A330040F15 gene
Cpgi10643 19 12595616 to 12596663 1047 CpG island CpG island 10643
Tssr155340 19 12595686 to 12595701 15 + TSS region transcription start site region 155340
Tssr155341 19 12595717 to 12595751 34 + TSS region transcription start site region 155341
4122401K19Rik 19 12595748 to 12598308 2560 unclassified non-coding RNA gene RIKEN cDNA 4122401K19 gene
Tssr155342 19 12595763 to 12595784 21 + TSS region transcription start site region 155342
D19Mit79 19 12597623 to 12597757 134 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 79
Tssr155343 19 12599928 to 12599939 11 + TSS region transcription start site region 155343
Tssr155344 19 12599953 to 12600010 57 + TSS region transcription start site region 155344
Gm4952 19 12599984 to 12627616 27632 + protein coding gene predicted gene 4952
Tssr155345 19 12600044 to 12600051 7 + TSS region transcription start site region 155345
Tssr155346 19 12625425 to 12625426 1 + TSS region transcription start site region 155346
Tssr155347 19 12627657 to 12627666 9 + TSS region transcription start site region 155347
Tssr155348 19 12633303 to 12633325 22 + TSS region transcription start site region 155348
Glyat 19 12633308 to 12651737 18429 + protein coding gene glycine-N-acyltransferase
Tssr155349 19 12633329 to 12633352 23 + TSS region transcription start site region 155349
Tssr155350 19 12633356 to 12633369 13 + TSS region transcription start site region 155350
Tssr155351 19 12633507 to 12633525 18 + TSS region transcription start site region 155351
Tssr155352 19 12654962 to 12654967 5 + TSS region transcription start site region 155352
Gm24521 19 12665255 to 12665361 106 + snRNA gene predicted gene, 24521
Olfr1442 19 12674179 to 12675243 1064 + protein coding gene olfactory receptor 1442
Olfr1443 19 12678166 to 12683851 5685 + protein coding gene olfactory receptor 1443
Gm49772 19 12681771 to 12681915 144 + pseudogene predicted gene, 49772
Tssr155353 19 12695783 to 12695809 26 + TSS region transcription start site region 155353
Keg1 19 12695790 to 12719902 24112 + protein coding gene kidney expressed gene 1
Tssr155354 19 12700107 to 12700117 10 + TSS region transcription start site region 155354
Gm15962 19 12706055 to 12721247 15192 - antisense lncRNA gene predicted gene 15962
Gm18543 19 12713227 to 12713948 721 - pseudogene predicted gene, 18543
Gm44505 19 12763528 to 12796123 32595 - lncRNA gene predicted readthrough transcript (NMD candidate), 44505
Cntf 19 12763660 to 12765632 1972 - protein coding gene ciliary neurotrophic factor
Tssr158445 19 12765418 to 12765443 25 - TSS region transcription start site region 158445
Tssr158446 19 12765447 to 12765485 38 - TSS region transcription start site region 158446
Zfp91 19 12766939 to 12796123 29184 - protein coding gene zinc finger protein 91
Tssr158447 19 12767754 to 12767758 4 - TSS region transcription start site region 158447
Tssr158448 19 12792160 to 12792163 3 - TSS region transcription start site region 158448
Cpgi10644 19 12794614 to 12796783 2169 CpG island CpG island 10644
Tssr155355 19 12794961 to 12795000 39 + TSS region transcription start site region 155355
Tssr158449 19 12795014 to 12795050 36 - TSS region transcription start site region 158449
Tssr158450 19 12795366 to 12795377 11 - TSS region transcription start site region 158450
Tssr158451 19 12795424 to 12795465 41 - TSS region transcription start site region 158451
Tssr158452 19 12795481 to 12795497 16 - TSS region transcription start site region 158452
Tssr158453 19 12795516 to 12795567 51 - TSS region transcription start site region 158453
Tssr155356 19 12795722 to 12795732 10 + TSS region transcription start site region 155356
Tssr155357 19 12795868 to 12795897 29 + TSS region transcription start site region 155357
Tssr155358 19 12795898 to 12795911 13 + TSS region transcription start site region 155358
Tssr158454 19 12796108 to 12796146 38 - TSS region transcription start site region 158454
Tssr158455 19 12796554 to 12796568 14 - TSS region transcription start site region 158455
Tssr158456 19 12796574 to 12796605 31 - TSS region transcription start site region 158456
Tssr155359 19 12798574 to 12798589 15 + TSS region transcription start site region 155359
Lpxn 19 12798606 to 12833807 35201 + protein coding gene leupaxin
Tssr155360 19 12798624 to 12798636 12 + TSS region transcription start site region 155360
Tssr155361 19 12801360 to 12801374 14 + TSS region transcription start site region 155361
Tssr155362 19 12804709 to 12804720 11 + TSS region transcription start site region 155362
Tssr155363 19 12804858 to 12804874 16 + TSS region transcription start site region 155363
Tssr155364 19 12804876 to 12804887 11 + TSS region transcription start site region 155364
Tssr155365 19 12805288 to 12805335 47 + TSS region transcription start site region 155365
Tssr155366 19 12805348 to 12805380 32 + TSS region transcription start site region 155366
Tssr155367 19 12806200 to 12806231 31 + TSS region transcription start site region 155367
Tssr155368 19 12827957 to 12827971 14 + TSS region transcription start site region 155368
Tssr155369 19 12846774 to 12846781 7 + TSS region transcription start site region 155369
Gm5244 19 12846804 to 12847248 444 + pseudogene predicted pseudogene 5244
Olfr1444 19 12861777 to 12862736 959 + protein coding gene olfactory receptor 1444