Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:11811387-12031414

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stx3 19 11775118 to 11819403 44285 - protein coding gene syntaxin 3
Tssr155281 19 11813410 to 11813422 12 + TSS region transcription start site region 155281
Tssr155282 19 11813429 to 11813441 12 + TSS region transcription start site region 155282
Tssr155283 19 11818075 to 11818104 29 + TSS region transcription start site region 155283
Tssr155284 19 11818105 to 11818115 10 + TSS region transcription start site region 155284
Cpgi10634 19 11818186 to 11819396 1210 CpG island CpG island 10634
Tssr158398 19 11818418 to 11818442 24 - TSS region transcription start site region 158398
Tssr155285 19 11818543 to 11818576 33 + TSS region transcription start site region 155285
Tssr158399 19 11818806 to 11818883 77 - TSS region transcription start site region 158399
Tssr158400 19 11818919 to 11818965 46 - TSS region transcription start site region 158400
Tssr155286 19 11819036 to 11819042 6 + TSS region transcription start site region 155286
Cpgi10635 19 11819719 to 11820144 425 CpG island CpG island 10635
Tssr155287 19 11821481 to 11821495 14 + TSS region transcription start site region 155287
Tssr155288 19 11821822 to 11821850 28 + TSS region transcription start site region 155288
Olfr1417 19 11828077 to 11829024 947 - protein coding gene olfactory receptor 1417
Olfr1418 19 11854995 to 11855951 956 - protein coding gene olfactory receptor 1418
Gm45119 19 11864436 to 11864634 198 - pseudogene predicted gene 45119
Cpgi10636 19 11868671 to 11869223 552 CpG island CpG island 10636
Tssr158401 19 11868922 to 11868943 21 - TSS region transcription start site region 158401
Tssr158402 19 11869040 to 11869090 50 - TSS region transcription start site region 158402
Tssr158403 19 11869114 to 11869128 14 - TSS region transcription start site region 158403
Olfr1419 19 11870183 to 11871214 1031 - protein coding gene olfactory receptor 1419
Gm6365 19 11877615 to 11878358 743 - pseudogene predicted pseudogene 6365
Gm31092 19 11895522 to 11912231 16709 - lncRNA gene predicted gene, 31092
Olfr1420 19 11896023 to 11896952 929 + protein coding gene olfactory receptor 1420
Cpgi10637 19 11911649 to 11913224 1575 CpG island CpG island 10637
Tssr158404 19 11912071 to 11912080 9 - TSS region transcription start site region 158404
Tssr158405 19 11912101 to 11912104 3 - TSS region transcription start site region 158405
Tssr155289 19 11912252 to 11912272 20 + TSS region transcription start site region 155289
Tssr155290 19 11912290 to 11912306 16 + TSS region transcription start site region 155290
Tssr155291 19 11912308 to 11912325 17 + TSS region transcription start site region 155291
Tssr155292 19 11912331 to 11912355 24 + TSS region transcription start site region 155292
Tssr155293 19 11912389 to 11912475 86 + TSS region transcription start site region 155293
Patl1 19 11912399 to 11945096 32697 + protein coding gene protein associated with topoisomerase II homolog 1 (yeast)
Tssr155294 19 11913123 to 11913135 12 + TSS region transcription start site region 155294
Tssr155295 19 11921387 to 11921414 27 + TSS region transcription start site region 155295
Tssr155296 19 11921422 to 11921433 11 + TSS region transcription start site region 155296
Mir6994 19 11923728 to 11923800 72 + miRNA gene microRNA 6994
Tssr155297 19 11923940 to 11923964 24 + TSS region transcription start site region 155297
Gm22272 19 11933495 to 11933628 133 - snoRNA gene predicted gene, 22272
Tssr155298 19 11943431 to 11943445 14 + TSS region transcription start site region 155298
Gm46643 19 11958619 to 11958994 375 + pseudogene predicted gene, 46643
Tssr155299 19 11958633 to 11958646 13 + TSS region transcription start site region 155299
Tssr158406 19 11965136 to 11965150 14 - TSS region transcription start site region 158406
Cpgi10638 19 11965223 to 11966695 1472 CpG island CpG island 10638
Tssr155300 19 11965692 to 11965706 14 + TSS region transcription start site region 155300
Tssr155301 19 11965788 to 11965811 23 + TSS region transcription start site region 155301
Tssr155302 19 11965817 to 11965887 70 + TSS region transcription start site region 155302
Osbp 19 11965844 to 11994105 28261 + protein coding gene oxysterol binding protein
Tssr155303 19 11965901 to 11965930 29 + TSS region transcription start site region 155303
Tssr158407 19 11966145 to 11966154 9 - TSS region transcription start site region 158407
Tssr158408 19 11966155 to 11966160 5 - TSS region transcription start site region 158408
Tssr158409 19 11966164 to 11966193 29 - TSS region transcription start site region 158409
Tssr155304 19 11970299 to 11970311 12 + TSS region transcription start site region 155304
Tssr155305 19 11976989 to 11976995 6 + TSS region transcription start site region 155305
Tssr155306 19 11977021 to 11977032 11 + TSS region transcription start site region 155306
n-TFgaa6 19 12002236 to 12002308 72 + tRNA gene nuclear encoded tRNA pheylalanine 6 (anticodon GAA)
Cpgi10639 19 12005469 to 12005674 205 CpG island CpG island 10639
n-TKctt29 19 12006039 to 12006111 72 + tRNA gene nuclear encoded tRNA lysine 29 (anticodon TTT)
n-TFgaa2 19 12008545 to 12008617 72 + tRNA gene nuclear encoded tRNA pheylalanine 2 (anticodon GAA)
n-TKctt30 19 12009696 to 12009768 72 - tRNA gene nuclear encoded tRNA lysine 30 (anticodon TTT)
Gm31151 19 12010115 to 12018404 8289 + lncRNA gene predicted gene, 31151
Cpgi10640 19 12010150 to 12010750 600 CpG island CpG island 10640
Tssr155307 19 12010523 to 12010534 11 + TSS region transcription start site region 155307
n-TLtaa4 19 12011086 to 12011168 82 - tRNA gene nuclear encoded tRNA leucine 4 (anticodon TAA)
n-TRtct1 19 12011588 to 12011673 85 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon TCT)
Cpgi10641 19 12011597 to 12012005 408 CpG island CpG island 10641
n-TVtac1 19 12011931 to 12012003 72 + tRNA gene nuclear encoded tRNA valine 1 (anticodon TAC)
n-TVtac2 19 12012266 to 12012338 72 + tRNA gene nuclear encoded tRNA valine 2 (anticodon TAC)
Olfr1421-ps1 19 12020175 to 12020382 207 + pseudogene olfactory receptor 1421, pseudogene 1
Gm45115 19 12020505 to 12020562 57 - pseudogene predicted gene 45115
Olfr1422-ps1 19 12021055 to 12021763 708 - pseudogene olfactory receptor 1422, pseudogene 1
Gm45116 19 12026646 to 12026920 274 - pseudogene predicted gene 45116