Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:11782491-12712646

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209 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stx3 19 11775118 to 11819403 44285 - protein coding gene syntaxin 3
Tssr158397 19 11803434 to 11803452 18 - TSS region transcription start site region 158397
Tssr155278 19 11810013 to 11810022 9 + TSS region transcription start site region 155278
Tssr155279 19 11810635 to 11810650 15 + TSS region transcription start site region 155279
Tssr155280 19 11810652 to 11810705 53 + TSS region transcription start site region 155280
Tssr155281 19 11813410 to 11813422 12 + TSS region transcription start site region 155281
Tssr155282 19 11813429 to 11813441 12 + TSS region transcription start site region 155282
Tssr155283 19 11818075 to 11818104 29 + TSS region transcription start site region 155283
Tssr155284 19 11818105 to 11818115 10 + TSS region transcription start site region 155284
Cpgi10634 19 11818186 to 11819396 1210 CpG island CpG island 10634
Tssr158398 19 11818418 to 11818442 24 - TSS region transcription start site region 158398
Tssr155285 19 11818543 to 11818576 33 + TSS region transcription start site region 155285
Tssr158399 19 11818806 to 11818883 77 - TSS region transcription start site region 158399
Tssr158400 19 11818919 to 11818965 46 - TSS region transcription start site region 158400
Tssr155286 19 11819036 to 11819042 6 + TSS region transcription start site region 155286
Cpgi10635 19 11819719 to 11820144 425 CpG island CpG island 10635
Tssr155287 19 11821481 to 11821495 14 + TSS region transcription start site region 155287
Tssr155288 19 11821822 to 11821850 28 + TSS region transcription start site region 155288
Olfr1417 19 11828077 to 11829024 947 - protein coding gene olfactory receptor 1417
Olfr1418 19 11854995 to 11855951 956 - protein coding gene olfactory receptor 1418
Gm45119 19 11864436 to 11864634 198 - pseudogene predicted gene 45119
Cpgi10636 19 11868671 to 11869223 552 CpG island CpG island 10636
Tssr158401 19 11868922 to 11868943 21 - TSS region transcription start site region 158401
Tssr158402 19 11869040 to 11869090 50 - TSS region transcription start site region 158402
Tssr158403 19 11869114 to 11869128 14 - TSS region transcription start site region 158403
Olfr1419 19 11870183 to 11871214 1031 - protein coding gene olfactory receptor 1419
Gm6365 19 11877615 to 11878358 743 - pseudogene predicted pseudogene 6365
Gm31092 19 11895522 to 11912231 16709 - lncRNA gene predicted gene, 31092
Olfr1420 19 11896023 to 11896952 929 + protein coding gene olfactory receptor 1420
Cpgi10637 19 11911649 to 11913224 1575 CpG island CpG island 10637
Tssr158404 19 11912071 to 11912080 9 - TSS region transcription start site region 158404
Tssr158405 19 11912101 to 11912104 3 - TSS region transcription start site region 158405
Tssr155289 19 11912252 to 11912272 20 + TSS region transcription start site region 155289
Tssr155290 19 11912290 to 11912306 16 + TSS region transcription start site region 155290
Tssr155291 19 11912308 to 11912325 17 + TSS region transcription start site region 155291
Tssr155292 19 11912331 to 11912355 24 + TSS region transcription start site region 155292
Tssr155293 19 11912389 to 11912475 86 + TSS region transcription start site region 155293
Patl1 19 11912399 to 11945096 32697 + protein coding gene protein associated with topoisomerase II homolog 1 (yeast)
Tssr155294 19 11913123 to 11913135 12 + TSS region transcription start site region 155294
Tssr155295 19 11921387 to 11921414 27 + TSS region transcription start site region 155295
Tssr155296 19 11921422 to 11921433 11 + TSS region transcription start site region 155296
Mir6994 19 11923728 to 11923800 72 + miRNA gene microRNA 6994
Tssr155297 19 11923940 to 11923964 24 + TSS region transcription start site region 155297
Gm22272 19 11933495 to 11933628 133 - snoRNA gene predicted gene, 22272
Tssr155298 19 11943431 to 11943445 14 + TSS region transcription start site region 155298
Gm46643 19 11958619 to 11958994 375 + pseudogene predicted gene, 46643
Tssr155299 19 11958633 to 11958646 13 + TSS region transcription start site region 155299
Tssr158406 19 11965136 to 11965150 14 - TSS region transcription start site region 158406
Cpgi10638 19 11965223 to 11966695 1472 CpG island CpG island 10638
Tssr155300 19 11965692 to 11965706 14 + TSS region transcription start site region 155300
Tssr155301 19 11965788 to 11965811 23 + TSS region transcription start site region 155301
Tssr155302 19 11965817 to 11965887 70 + TSS region transcription start site region 155302
Osbp 19 11965844 to 11994105 28261 + protein coding gene oxysterol binding protein
Tssr155303 19 11965901 to 11965930 29 + TSS region transcription start site region 155303
Tssr158407 19 11966145 to 11966154 9 - TSS region transcription start site region 158407
Tssr158408 19 11966155 to 11966160 5 - TSS region transcription start site region 158408
Tssr158409 19 11966164 to 11966193 29 - TSS region transcription start site region 158409
Tssr155304 19 11970299 to 11970311 12 + TSS region transcription start site region 155304
Tssr155305 19 11976989 to 11976995 6 + TSS region transcription start site region 155305
Tssr155306 19 11977021 to 11977032 11 + TSS region transcription start site region 155306
n-TFgaa6 19 12002236 to 12002308 72 + tRNA gene nuclear encoded tRNA pheylalanine 6 (anticodon GAA)
Cpgi10639 19 12005469 to 12005674 205 CpG island CpG island 10639
n-TKctt29 19 12006039 to 12006111 72 + tRNA gene nuclear encoded tRNA lysine 29 (anticodon TTT)
n-TFgaa2 19 12008545 to 12008617 72 + tRNA gene nuclear encoded tRNA pheylalanine 2 (anticodon GAA)
n-TKctt30 19 12009696 to 12009768 72 - tRNA gene nuclear encoded tRNA lysine 30 (anticodon TTT)
Gm31151 19 12010115 to 12018404 8289 + lncRNA gene predicted gene, 31151
Cpgi10640 19 12010150 to 12010750 600 CpG island CpG island 10640
Tssr155307 19 12010523 to 12010534 11 + TSS region transcription start site region 155307
n-TLtaa4 19 12011086 to 12011168 82 - tRNA gene nuclear encoded tRNA leucine 4 (anticodon TAA)
n-TRtct1 19 12011588 to 12011673 85 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon TCT)
Cpgi10641 19 12011597 to 12012005 408 CpG island CpG island 10641
n-TVtac1 19 12011931 to 12012003 72 + tRNA gene nuclear encoded tRNA valine 1 (anticodon TAC)
n-TVtac2 19 12012266 to 12012338 72 + tRNA gene nuclear encoded tRNA valine 2 (anticodon TAC)
Olfr1421-ps1 19 12020175 to 12020382 207 + pseudogene olfactory receptor 1421, pseudogene 1
Gm45115 19 12020505 to 12020562 57 - pseudogene predicted gene 45115
Olfr1422-ps1 19 12021055 to 12021763 708 - pseudogene olfactory receptor 1422, pseudogene 1
Gm45116 19 12026646 to 12026920 274 - pseudogene predicted gene 45116
Olfr1423 19 12035808 to 12036740 932 - protein coding gene olfactory receptor 1423
Gm44859 19 12037731 to 12037824 93 + pseudogene predicted gene 44859
Olfr1424 19 12058809 to 12059750 941 - protein coding gene olfactory receptor 1424
Olfr1425 19 12073695 to 12074630 935 - protein coding gene olfactory receptor 1425
Tssr5449 19 12076028 to 12076029 1 + TSS region transcription start site region 5449
Olfr1426 19 12087610 to 12091847 4237 - protein coding gene olfactory receptor 1426
Olfr1427 19 12098702 to 12099637 935 - protein coding gene olfactory receptor 1427
Olfr1428 19 12108600 to 12115828 7228 - protein coding gene olfactory receptor 1428
Olfr76 19 12119721 to 12120674 953 - protein coding gene olfactory receptor 76
Olfr1529-ps1 19 12166137 to 12239303 73166 pseudogene olfactory receptor 1529, pseudogene 1
Olfr1555-ps1 19 12166687 to 12167103 416 - pseudogene olfactory receptor 1555, pseudogene 1
Olfr1430-ps1 19 12177610 to 12178523 913 - pseudogene olfactory receptor 1430, pseudogene 1
Olfr1431 19 12209568 to 12210506 938 + protein coding gene olfactory receptor 1431
Olfr1432 19 12228519 to 12229562 1043 - protein coding gene olfactory receptor 1432
Olfr262 19 12240721 to 12241659 938 - protein coding gene olfactory receptor 262
Gm26864 19 12247491 to 12247646 155 - pseudogene predicted gene, 26864
Olfr235 19 12268232 to 12269170 938 + protein coding gene olfactory receptor 235
Gm17802 19 12273381 to 12275157 1776 + pseudogene predicted gene, 17802
Olfr1434 19 12279854 to 12283988 4134 + protein coding gene olfactory receptor 1434
Olfr1435-ps1 19 12290058 to 12290306 248 - pseudogene olfactory receptor 1435, pseudogene 1
Olfr1436 19 12298183 to 12299130 947 - protein coding gene olfactory receptor 1436
Gm44858 19 12314874 to 12315027 153 - pseudogene predicted gene 44858
Olfr1437 19 12321887 to 12325066 3179 - protein coding gene olfactory receptor 1437
Olfr1438-ps1 19 12332895 to 12333854 959 - pseudogene olfactory receptor 1438, pseudogene 1
Olfr1439-ps1 19 12340495 to 12341142 647 - pseudogene olfactory receptor 1439, pseudogene 1
Olfr1440 19 12387304 to 12395212 7908 + protein coding gene olfactory receptor 1440
Olfr1441 19 12422311 to 12423267 956 + protein coding gene olfactory receptor 1441
Tssr155308 19 12427904 to 12427928 24 + TSS region transcription start site region 155308
Pfpl 19 12427905 to 12432110 4205 + protein coding gene pore forming protein-like
Tssr158410 19 12434853 to 12434864 11 - TSS region transcription start site region 158410
Tssr155309 19 12435195 to 12435215 20 + TSS region transcription start site region 155309
Tssr158411 19 12436028 to 12436044 16 - TSS region transcription start site region 158411
Tssr158412 19 12436046 to 12436059 13 - TSS region transcription start site region 158412
Tssr155310 19 12436323 to 12436331 8 + TSS region transcription start site region 155310
Tssr155311 19 12436391 to 12436410 19 + TSS region transcription start site region 155311
Tssr155312 19 12440347 to 12440361 14 + TSS region transcription start site region 155312
Tssr155313 19 12440401 to 12440416 15 + TSS region transcription start site region 155313
Tssr155314 19 12442781 to 12442793 12 + TSS region transcription start site region 155314
Tssr155315 19 12442794 to 12442808 14 + TSS region transcription start site region 155315
Tssr155316 19 12442813 to 12442827 14 + TSS region transcription start site region 155316
Tssr155317 19 12442833 to 12442841 8 + TSS region transcription start site region 155317
Tssr155318 19 12457899 to 12457917 18 + TSS region transcription start site region 155318
Tssr155319 19 12460749 to 12460783 34 + TSS region transcription start site region 155319
Mpeg1 19 12460779 to 12465284 4505 + protein coding gene macrophage expressed gene 1
Tssr155320 19 12460785 to 12460796 11 + TSS region transcription start site region 155320
Tssr155321 19 12460809 to 12460825 16 + TSS region transcription start site region 155321
Tssr155322 19 12461032 to 12461043 11 + TSS region transcription start site region 155322
Tssr155323 19 12461089 to 12461101 12 + TSS region transcription start site region 155323
Tssr155324 19 12461110 to 12461160 50 + TSS region transcription start site region 155324
Tssr155325 19 12461172 to 12461183 11 + TSS region transcription start site region 155325
Tssr158413 19 12461710 to 12461773 63 - TSS region transcription start site region 158413
Tssr158414 19 12463786 to 12463809 23 - TSS region transcription start site region 158414
Tssr158415 19 12463836 to 12463854 18 - TSS region transcription start site region 158415
Tssr158416 19 12464289 to 12464298 9 - TSS region transcription start site region 158416
Tssr155326 19 12464807 to 12464818 11 + TSS region transcription start site region 155326
Tssr155327 19 12464902 to 12464906 4 + TSS region transcription start site region 155327
Tssr155328 19 12464937 to 12464950 13 + TSS region transcription start site region 155328
Tssr158417 19 12465273 to 12465277 4 - TSS region transcription start site region 158417
Tssr155329 19 12465741 to 12465761 20 + TSS region transcription start site region 155329
Tssr155330 19 12465804 to 12465815 11 + TSS region transcription start site region 155330
Tssr155331 19 12465841 to 12465856 15 + TSS region transcription start site region 155331
Tssr155332 19 12465858 to 12465876 18 + TSS region transcription start site region 155332
Dtx4 19 12466341 to 12501996 35655 - protein coding gene deltex 4, E3 ubiquitin ligase
Tssr158418 19 12469060 to 12469065 5 - TSS region transcription start site region 158418
Tssr158419 19 12473324 to 12473348 24 - TSS region transcription start site region 158419
Tssr158420 19 12473424 to 12473433 9 - TSS region transcription start site region 158420
Tssr158421 19 12476966 to 12476979 13 - TSS region transcription start site region 158421
Tssr158422 19 12487040 to 12487060 20 - TSS region transcription start site region 158422
Tssr158423 19 12491938 to 12491983 45 - TSS region transcription start site region 158423
Cpgi10642 19 12500806 to 12502226 1420 CpG island CpG island 10642
Tssr155333 19 12501178 to 12501198 20 + TSS region transcription start site region 155333
Tssr158424 19 12501440 to 12501454 14 - TSS region transcription start site region 158424
Tssr158425 19 12501478 to 12501505 27 - TSS region transcription start site region 158425
Tssr158426 19 12501547 to 12501630 83 - TSS region transcription start site region 158426
Tssr158427 19 12501633 to 12501672 39 - TSS region transcription start site region 158427
Tssr158428 19 12501813 to 12501822 9 - TSS region transcription start site region 158428
Tssr158429 19 12501836 to 12501847 11 - TSS region transcription start site region 158429
Tssr158430 19 12501849 to 12501871 22 - TSS region transcription start site region 158430
Tssr158431 19 12501902 to 12501931 29 - TSS region transcription start site region 158431
Tssr158432 19 12501935 to 12501973 38 - TSS region transcription start site region 158432
Tssr5450 19 12502064 to 12502079 15 - TSS region transcription start site region 5450
Tssr158433 19 12502082 to 12502152 70 - TSS region transcription start site region 158433
Gm31208 19 12517921 to 12524338 6417 - lncRNA gene predicted gene, 31208
Gm47243 19 12519800 to 12523576 3776 + lincRNA gene predicted gene, 47243
Tssr158434 19 12526381 to 12526392 11 - TSS region transcription start site region 158434
Tssr158435 19 12526423 to 12526441 18 - TSS region transcription start site region 158435
Tssr158436 19 12527095 to 12527104 9 - TSS region transcription start site region 158436
Tssr158437 19 12527543 to 12527558 15 - TSS region transcription start site region 158437
Tssr158438 19 12527559 to 12527577 18 - TSS region transcription start site region 158438
Tssr158439 19 12528202 to 12528216 14 - TSS region transcription start site region 158439
Gm6545 19 12528763 to 12530519 1756 - pseudogene predicted gene 6545
Tssr158440 19 12531930 to 12531980 50 - TSS region transcription start site region 158440
Gm47242 19 12539588 to 12540823 1235 - lincRNA gene predicted gene, 47242
Tssr158441 19 12540749 to 12540760 11 - TSS region transcription start site region 158441
Tssr158442 19 12540785 to 12540794 9 - TSS region transcription start site region 158442
Tssr158443 19 12540815 to 12540831 16 - TSS region transcription start site region 158443
Tssr155334 19 12564463 to 12564490 27 + TSS region transcription start site region 155334
Tssr155335 19 12564492 to 12564508 16 + TSS region transcription start site region 155335
Tssr155336 19 12564524 to 12564541 17 + TSS region transcription start site region 155336
Gm16274 19 12568235 to 12568826 591 - pseudogene predicted gene 16274
Fam111a 19 12573072 to 12589769 16697 + protein coding gene family with sequence similarity 111, member A
Tssr155337 19 12573508 to 12573542 34 + TSS region transcription start site region 155337
Tssr158444 19 12574226 to 12574252 26 - TSS region transcription start site region 158444
Tssr155338 19 12574397 to 12574402 5 + TSS region transcription start site region 155338
Tssr155339 19 12585864 to 12585868 4 + TSS region transcription start site region 155339
A330040F15Rik 19 12585868 to 12596566 10698 - lncRNA gene RIKEN cDNA A330040F15 gene
Cpgi10643 19 12595616 to 12596663 1047 CpG island CpG island 10643
Tssr155340 19 12595686 to 12595701 15 + TSS region transcription start site region 155340
Tssr155341 19 12595717 to 12595751 34 + TSS region transcription start site region 155341
4122401K19Rik 19 12595748 to 12598308 2560 unclassified non-coding RNA gene RIKEN cDNA 4122401K19 gene
Tssr155342 19 12595763 to 12595784 21 + TSS region transcription start site region 155342
D19Mit79 19 12597623 to 12597757 134 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 79
Tssr155343 19 12599928 to 12599939 11 + TSS region transcription start site region 155343
Tssr155344 19 12599953 to 12600010 57 + TSS region transcription start site region 155344
Gm4952 19 12599984 to 12627616 27632 + protein coding gene predicted gene 4952
Tssr155345 19 12600044 to 12600051 7 + TSS region transcription start site region 155345
Tssr155346 19 12625425 to 12625426 1 + TSS region transcription start site region 155346
Tssr155347 19 12627657 to 12627666 9 + TSS region transcription start site region 155347
Tssr155348 19 12633303 to 12633325 22 + TSS region transcription start site region 155348
Glyat 19 12633308 to 12651737 18429 + protein coding gene glycine-N-acyltransferase
Tssr155349 19 12633329 to 12633352 23 + TSS region transcription start site region 155349
Tssr155350 19 12633356 to 12633369 13 + TSS region transcription start site region 155350
Tssr155351 19 12633507 to 12633525 18 + TSS region transcription start site region 155351