Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:11535652-12085705

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ms4ac 19 10962293 to 11640851 678558 complex/cluster/region membrane-spanning 4-domains, subfamily A cluster
Tssr155260 19 11536769 to 11536846 77 + TSS region transcription start site region 155260
Ms4a4d 19 11536849 to 11558466 21617 + protein coding gene membrane-spanning 4-domains, subfamily A, member 4D
Gm10212 19 11569439 to 11570979 1540 + pseudogene predicted pseudogene 10212
Gm38275 19 11582826 to 11584357 1531 - unclassified gene predicted gene, 38275
Tssr158355 19 11586440 to 11586480 40 - TSS region transcription start site region 158355
Tssr155261 19 11586603 to 11586610 7 + TSS region transcription start site region 155261
Ms4a6d 19 11586606 to 11604804 18198 - protein coding gene membrane-spanning 4-domains, subfamily A, member 6D
Tssr158356 19 11586736 to 11586751 15 - TSS region transcription start site region 158356
Tssr158357 19 11586757 to 11586823 66 - TSS region transcription start site region 158357
Tssr158358 19 11586976 to 11587041 65 - TSS region transcription start site region 158358
Tssr158359 19 11587834 to 11587837 3 - TSS region transcription start site region 158359
Tssr158360 19 11588005 to 11588034 29 - TSS region transcription start site region 158360
Tssr158361 19 11588691 to 11588739 48 - TSS region transcription start site region 158361
Tssr158362 19 11589058 to 11589081 23 - TSS region transcription start site region 158362
Tssr158363 19 11589285 to 11589314 29 - TSS region transcription start site region 158363
Tssr158364 19 11589999 to 11590041 42 - TSS region transcription start site region 158364
Tssr158365 19 11590042 to 11590133 91 - TSS region transcription start site region 158365
Tssr158366 19 11590152 to 11590208 56 - TSS region transcription start site region 158366
Tssr155262 19 11592079 to 11592083 4 + TSS region transcription start site region 155262
Tssr158367 19 11592451 to 11592464 13 - TSS region transcription start site region 158367
Tssr158368 19 11592882 to 11592926 44 - TSS region transcription start site region 158368
Tssr158369 19 11600409 to 11600437 28 - TSS region transcription start site region 158369
Tssr158370 19 11600668 to 11600689 21 - TSS region transcription start site region 158370
Tssr155263 19 11601825 to 11601865 40 + TSS region transcription start site region 155263
Tssr158371 19 11602087 to 11602101 14 - TSS region transcription start site region 158371
Tssr158372 19 11602188 to 11602204 16 - TSS region transcription start site region 158372
Tssr158373 19 11602211 to 11602222 11 - TSS region transcription start site region 158373
Tssr158374 19 11603011 to 11603023 12 - TSS region transcription start site region 158374
Tssr158375 19 11603034 to 11603048 14 - TSS region transcription start site region 158375
Tssr155264 19 11603166 to 11603197 31 + TSS region transcription start site region 155264
Tssr158376 19 11603197 to 11603296 99 - TSS region transcription start site region 158376
Tssr158377 19 11603297 to 11603330 33 - TSS region transcription start site region 158377
Tssr158378 19 11603426 to 11603437 11 - TSS region transcription start site region 158378
Tssr158379 19 11603875 to 11603888 13 - TSS region transcription start site region 158379
Tssr158380 19 11604714 to 11604724 10 - TSS region transcription start site region 158380
Tssr158381 19 11604733 to 11604748 15 - TSS region transcription start site region 158381
Tssr158382 19 11604749 to 11604766 17 - TSS region transcription start site region 158382
Tssr158383 19 11604768 to 11604793 25 - TSS region transcription start site region 158383
Tssr158384 19 11604808 to 11604817 9 - TSS region transcription start site region 158384
Tssr158385 19 11604828 to 11604833 5 - TSS region transcription start site region 158385
Tssr158386 19 11604843 to 11604864 21 - TSS region transcription start site region 158386
Gm24599 19 11607389 to 11607438 49 - snoRNA gene predicted gene, 24599
Ms4a2 19 11615523 to 11623719 8196 - protein coding gene membrane-spanning 4-domains, subfamily A, member 2
Tssr155265 19 11618948 to 11618951 3 + TSS region transcription start site region 155265
Tssr158387 19 11623678 to 11623709 31 - TSS region transcription start site region 158387
Ms4a3 19 11629499 to 11640851 11352 - protein coding gene membrane-spanning 4-domains, subfamily A, member 3
Tssr158388 19 11640713 to 11640726 13 - TSS region transcription start site region 158388
Tssr158389 19 11640727 to 11640744 17 - TSS region transcription start site region 158389
Tssr158390 19 11640772 to 11640773 1 - TSS region transcription start site region 158390
Tssr158391 19 11640803 to 11640808 5 - TSS region transcription start site region 158391
Tssr158392 19 11640828 to 11640840 12 - TSS region transcription start site region 158392
Tssr158393 19 11640844 to 11640856 12 - TSS region transcription start site region 158393
Oosp2 19 11647284 to 11660559 13275 - protein coding gene oocyte secreted protein 2
Oosp1 19 11667460 to 11691051 23591 - protein coding gene oocyte secreted protein 1
Tssr158394 19 11691026 to 11691058 32 - TSS region transcription start site region 158394
Tssr155266 19 11694987 to 11694999 12 + TSS region transcription start site region 155266
Gm26183 19 11695041 to 11695179 138 + snoRNA gene predicted gene, 26183
Gm25443 19 11695267 to 11695342 75 + snoRNA gene predicted gene, 25443
Tssr155267 19 11697049 to 11697057 8 + TSS region transcription start site region 155267
Oosp3 19 11697055 to 11711858 14803 + protein coding gene oocyte secreted protein 3
Gm19224 19 11703516 to 11704026 510 - pseudogene predicted gene, 19224
Tssr155268 19 11747548 to 11747581 33 + TSS region transcription start site region 155268
Cblif 19 11747554 to 11763447 15893 + protein coding gene cobalamin binding intrinsic factor
Tssr155269 19 11747583 to 11747604 21 + TSS region transcription start site region 155269
Tssr155270 19 11748453 to 11748480 27 + TSS region transcription start site region 155270
Tssr155271 19 11749993 to 11749996 3 + TSS region transcription start site region 155271
Tssr155272 19 11750253 to 11750263 10 + TSS region transcription start site region 155272
Tssr155273 19 11755783 to 11755811 28 + TSS region transcription start site region 155273
Tssr155274 19 11755854 to 11755865 11 + TSS region transcription start site region 155274
Tssr158395 19 11759007 to 11759046 39 - TSS region transcription start site region 158395
Gm46655 19 11760943 to 11763189 2246 - lncRNA gene predicted gene, 46655
Cpgi10633 19 11770256 to 11770742 486 CpG island CpG island 10633
Tssr155275 19 11770357 to 11770406 49 + TSS region transcription start site region 155275
Mrpl16 19 11770415 to 11774944 4529 + protein coding gene mitochondrial ribosomal protein L16
Tssr155276 19 11770418 to 11770440 22 + TSS region transcription start site region 155276
Tssr155277 19 11770441 to 11770463 22 + TSS region transcription start site region 155277
Tssr158396 19 11774940 to 11774945 5 - TSS region transcription start site region 158396
Stx3 19 11775118 to 11819403 44285 - protein coding gene syntaxin 3
Tssr158397 19 11803434 to 11803452 18 - TSS region transcription start site region 158397
Tssr155278 19 11810013 to 11810022 9 + TSS region transcription start site region 155278
Tssr155279 19 11810635 to 11810650 15 + TSS region transcription start site region 155279
Tssr155280 19 11810652 to 11810705 53 + TSS region transcription start site region 155280
Tssr155281 19 11813410 to 11813422 12 + TSS region transcription start site region 155281
Tssr155282 19 11813429 to 11813441 12 + TSS region transcription start site region 155282
Tssr155283 19 11818075 to 11818104 29 + TSS region transcription start site region 155283
Tssr155284 19 11818105 to 11818115 10 + TSS region transcription start site region 155284
Cpgi10634 19 11818186 to 11819396 1210 CpG island CpG island 10634
Tssr158398 19 11818418 to 11818442 24 - TSS region transcription start site region 158398
Tssr155285 19 11818543 to 11818576 33 + TSS region transcription start site region 155285
Tssr158399 19 11818806 to 11818883 77 - TSS region transcription start site region 158399
Tssr158400 19 11818919 to 11818965 46 - TSS region transcription start site region 158400
Tssr155286 19 11819036 to 11819042 6 + TSS region transcription start site region 155286
Cpgi10635 19 11819719 to 11820144 425 CpG island CpG island 10635
Tssr155287 19 11821481 to 11821495 14 + TSS region transcription start site region 155287
Tssr155288 19 11821822 to 11821850 28 + TSS region transcription start site region 155288
Olfr1417 19 11828077 to 11829024 947 - protein coding gene olfactory receptor 1417
Olfr1418 19 11854995 to 11855951 956 - protein coding gene olfactory receptor 1418
Gm45119 19 11864436 to 11864634 198 - pseudogene predicted gene 45119
Cpgi10636 19 11868671 to 11869223 552 CpG island CpG island 10636
Tssr158401 19 11868922 to 11868943 21 - TSS region transcription start site region 158401
Tssr158402 19 11869040 to 11869090 50 - TSS region transcription start site region 158402
Tssr158403 19 11869114 to 11869128 14 - TSS region transcription start site region 158403
Olfr1419 19 11870183 to 11871214 1031 - protein coding gene olfactory receptor 1419
Gm6365 19 11877615 to 11878358 743 - pseudogene predicted pseudogene 6365
Gm31092 19 11895522 to 11912231 16709 - lncRNA gene predicted gene, 31092
Olfr1420 19 11896023 to 11896952 929 + protein coding gene olfactory receptor 1420
Cpgi10637 19 11911649 to 11913224 1575 CpG island CpG island 10637
Tssr158404 19 11912071 to 11912080 9 - TSS region transcription start site region 158404
Tssr158405 19 11912101 to 11912104 3 - TSS region transcription start site region 158405
Tssr155289 19 11912252 to 11912272 20 + TSS region transcription start site region 155289
Tssr155290 19 11912290 to 11912306 16 + TSS region transcription start site region 155290
Tssr155291 19 11912308 to 11912325 17 + TSS region transcription start site region 155291
Tssr155292 19 11912331 to 11912355 24 + TSS region transcription start site region 155292
Tssr155293 19 11912389 to 11912475 86 + TSS region transcription start site region 155293
Patl1 19 11912399 to 11945096 32697 + protein coding gene protein associated with topoisomerase II homolog 1 (yeast)
Tssr155294 19 11913123 to 11913135 12 + TSS region transcription start site region 155294
Tssr155295 19 11921387 to 11921414 27 + TSS region transcription start site region 155295
Tssr155296 19 11921422 to 11921433 11 + TSS region transcription start site region 155296
Mir6994 19 11923728 to 11923800 72 + miRNA gene microRNA 6994
Tssr155297 19 11923940 to 11923964 24 + TSS region transcription start site region 155297
Gm22272 19 11933495 to 11933628 133 - snoRNA gene predicted gene, 22272
Tssr155298 19 11943431 to 11943445 14 + TSS region transcription start site region 155298
Gm46643 19 11958619 to 11958994 375 + pseudogene predicted gene, 46643
Tssr155299 19 11958633 to 11958646 13 + TSS region transcription start site region 155299
Tssr158406 19 11965136 to 11965150 14 - TSS region transcription start site region 158406
Cpgi10638 19 11965223 to 11966695 1472 CpG island CpG island 10638
Tssr155300 19 11965692 to 11965706 14 + TSS region transcription start site region 155300
Tssr155301 19 11965788 to 11965811 23 + TSS region transcription start site region 155301
Tssr155302 19 11965817 to 11965887 70 + TSS region transcription start site region 155302
Osbp 19 11965844 to 11994105 28261 + protein coding gene oxysterol binding protein
Tssr155303 19 11965901 to 11965930 29 + TSS region transcription start site region 155303
Tssr158407 19 11966145 to 11966154 9 - TSS region transcription start site region 158407
Tssr158408 19 11966155 to 11966160 5 - TSS region transcription start site region 158408
Tssr158409 19 11966164 to 11966193 29 - TSS region transcription start site region 158409
Tssr155304 19 11970299 to 11970311 12 + TSS region transcription start site region 155304
Tssr155305 19 11976989 to 11976995 6 + TSS region transcription start site region 155305
Tssr155306 19 11977021 to 11977032 11 + TSS region transcription start site region 155306
n-TFgaa6 19 12002236 to 12002308 72 + tRNA gene nuclear encoded tRNA pheylalanine 6 (anticodon GAA)
Cpgi10639 19 12005469 to 12005674 205 CpG island CpG island 10639
n-TKctt29 19 12006039 to 12006111 72 + tRNA gene nuclear encoded tRNA lysine 29 (anticodon TTT)
n-TFgaa2 19 12008545 to 12008617 72 + tRNA gene nuclear encoded tRNA pheylalanine 2 (anticodon GAA)
n-TKctt30 19 12009696 to 12009768 72 - tRNA gene nuclear encoded tRNA lysine 30 (anticodon TTT)
Gm31151 19 12010115 to 12018404 8289 + lncRNA gene predicted gene, 31151
Cpgi10640 19 12010150 to 12010750 600 CpG island CpG island 10640
Tssr155307 19 12010523 to 12010534 11 + TSS region transcription start site region 155307
n-TLtaa4 19 12011086 to 12011168 82 - tRNA gene nuclear encoded tRNA leucine 4 (anticodon TAA)
n-TRtct1 19 12011588 to 12011673 85 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon TCT)
Cpgi10641 19 12011597 to 12012005 408 CpG island CpG island 10641
n-TVtac1 19 12011931 to 12012003 72 + tRNA gene nuclear encoded tRNA valine 1 (anticodon TAC)
n-TVtac2 19 12012266 to 12012338 72 + tRNA gene nuclear encoded tRNA valine 2 (anticodon TAC)
Olfr1421-ps1 19 12020175 to 12020382 207 + pseudogene olfactory receptor 1421, pseudogene 1
Gm45115 19 12020505 to 12020562 57 - pseudogene predicted gene 45115
Olfr1422-ps1 19 12021055 to 12021763 708 - pseudogene olfactory receptor 1422, pseudogene 1
Gm45116 19 12026646 to 12026920 274 - pseudogene predicted gene 45116
Olfr1423 19 12035808 to 12036740 932 - protein coding gene olfactory receptor 1423
Gm44859 19 12037731 to 12037824 93 + pseudogene predicted gene 44859
Olfr1424 19 12058809 to 12059750 941 - protein coding gene olfactory receptor 1424
Olfr1425 19 12073695 to 12074630 935 - protein coding gene olfactory receptor 1425
Tssr5449 19 12076028 to 12076029 1 + TSS region transcription start site region 5449