Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:9852536-11662657

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169 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Colec12 18 9707648 to 9877995 170347 + protein coding gene collectin sub-family member 12
Tssr152402 18 9866767 to 9866779 12 - TSS region transcription start site region 152402
Tssr150017 18 9877165 to 9877180 15 + TSS region transcription start site region 150017
Gm2424 18 9909196 to 9910499 1303 + pseudogene predicted gene 2424
Gm5501 18 9916927 to 9917758 831 + pseudogene predicted gene 5501
Cpgi9696 18 9957731 to 9958633 902 CpG island CpG island 9696
Tssr150018 18 9957947 to 9957987 40 + TSS region transcription start site region 150018
Tssr150019 18 9958147 to 9958186 39 + TSS region transcription start site region 150019
Thoc1 18 9958180 to 9995484 37304 + protein coding gene THO complex 1
Tssr150020 18 9958187 to 9958192 5 + TSS region transcription start site region 150020
D18Ertd693e 18 9980009 to 9980214 205 DNA segment DNA segment, Chr 18, ERATO Doi 693, expressed
Tssr152403 18 10012787 to 10012792 5 - TSS region transcription start site region 152403
Tssr152404 18 10016882 to 10016886 4 - TSS region transcription start site region 152404
Cpgi9697 18 10029584 to 10030187 603 CpG island CpG island 9697
Tssr152405 18 10029983 to 10029996 13 - TSS region transcription start site region 152405
Tssr152406 18 10030017 to 10030146 129 - TSS region transcription start site region 152406
Usp14 18 10030149 to 9993615 -36534 - protein coding gene ubiquitin specific peptidase 14
D18Mit221.2 18 10033826 to 10033942 116 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 221.2
D18Mit221 18 10033914 to 10034036 122 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 221
Cpgi9698 18 10052010 to 10052595 585 CpG island CpG island 9698
Tssr152407 18 10052152 to 10052162 10 - TSS region transcription start site region 152407
Rock1 18 10064401 to 10181792 117391 - protein coding gene Rho-associated coiled-coil containing protein kinase 1
Tssr152408 18 10065838 to 10065840 2 - TSS region transcription start site region 152408
Tssr152409 18 10083179 to 10083197 18 - TSS region transcription start site region 152409
Tssr152410 18 10090881 to 10090923 42 - TSS region transcription start site region 152410
Tssr152411 18 10093943 to 10093967 24 - TSS region transcription start site region 152411
Tssr152412 18 10100946 to 10100955 9 - TSS region transcription start site region 152412
Tssr152413 18 10104455 to 10104478 23 - TSS region transcription start site region 152413
Tssr152414 18 10106443 to 10106462 19 - TSS region transcription start site region 152414
Tssr152415 18 10116841 to 10116871 30 - TSS region transcription start site region 152415
Tssr152416 18 10125602 to 10125606 4 - TSS region transcription start site region 152416
Gm2531 18 10145453 to 10145965 512 - pseudogene predicted gene 2531
Gm26244 18 10150977 to 10151140 163 - snRNA gene predicted gene, 26244
Tssr152417 18 10151140 to 10151143 3 - TSS region transcription start site region 152417
Tssr152418 18 10172446 to 10172451 5 - TSS region transcription start site region 152418
Cpgi9699 18 10181229 to 10182578 1349 CpG island CpG island 9699
Tssr150021 18 10181303 to 10181314 11 + TSS region transcription start site region 150021
Tssr152419 18 10181326 to 10181356 30 - TSS region transcription start site region 152419
Tssr150022 18 10181399 to 10181409 10 + TSS region transcription start site region 150022
Tssr152420 18 10182010 to 10182032 22 - TSS region transcription start site region 152420
Tssr152421 18 10182034 to 10182053 19 - TSS region transcription start site region 152421
Tssr152422 18 10182068 to 10182092 24 - TSS region transcription start site region 152422
Tssr152423 18 10182095 to 10182107 12 - TSS region transcription start site region 152423
Tssr152424 18 10182128 to 10182151 23 - TSS region transcription start site region 152424
Tssr152425 18 10182162 to 10182179 17 - TSS region transcription start site region 152425
Tssr152426 18 10182183 to 10182223 40 - TSS region transcription start site region 152426
Gm50032 18 10194441 to 10194781 340 - pseudogene predicted gene, 50032
Gm7156 18 10197676 to 10198174 498 - pseudogene predicted gene 7156
Gm19052 18 10236685 to 10237821 1136 + pseudogene predicted gene, 19052
Gm5686 18 10262207 to 10263285 1078 + pseudogene predicted gene 5686
Gm50033 18 10307103 to 10307820 717 - unclassified gene predicted gene, 50033
Cpgi9700 18 10324824 to 10325968 1144 CpG island CpG island 9700
Tssr150023 18 10324917 to 10324950 33 + TSS region transcription start site region 150023
Tssr150024 18 10325148 to 10325222 74 + TSS region transcription start site region 150024
Greb1l 18 10325177 to 10562940 237763 + protein coding gene growth regulation by estrogen in breast cancer-like
Tssr150025 18 10326124 to 10326130 6 + TSS region transcription start site region 150025
C430014O12Rik 18 10327895 to 10328801 906 unclassified gene RIKEN cDNA C430014O12 gene
Tssr150026 18 10346149 to 10346152 3 + TSS region transcription start site region 150026
Gm44409 18 10365908 to 10366073 165 - miRNA gene predicted gene, 44409
Tssr150027 18 10447815 to 10447850 35 + TSS region transcription start site region 150027
Nutf2-ps2 18 10483087 to 10483465 378 - pseudogene nuclear transport factor 2, pseudogene 2
Cpgi9701 18 10532749 to 10533033 284 CpG island CpG island 9701
Gm24894 18 10551289 to 10551406 117 - snoRNA gene predicted gene, 24894
Esco1 18 10566507 to 10610352 43845 - protein coding gene establishment of sister chromatid cohesion N-acetyltransferase 1
Tssr152427 18 10588674 to 10588678 4 - TSS region transcription start site region 152427
Tssr152428 18 10594935 to 10594947 12 - TSS region transcription start site region 152428
Cpgi9702 18 10609432 to 10610648 1216 CpG island CpG island 9702
Tssr152429 18 10610048 to 10610116 68 - TSS region transcription start site region 152429
Tssr152430 18 10610124 to 10610144 20 - TSS region transcription start site region 152430
Tssr152431 18 10610269 to 10610288 19 - TSS region transcription start site region 152431
Tssr152432 18 10610301 to 10610312 11 - TSS region transcription start site region 152432
Tssr152433 18 10610346 to 10610363 17 - TSS region transcription start site region 152433
Cpgi9703 18 10617579 to 10618291 712 CpG island CpG island 9703
Tssr150028 18 10617768 to 10617845 77 + TSS region transcription start site region 150028
Snrpd1 18 10617796 to 10628230 10434 + protein coding gene small nuclear ribonucleoprotein D1
Tssr150029 18 10617846 to 10617855 9 + TSS region transcription start site region 150029
Tssr150030 18 10617858 to 10617873 15 + TSS region transcription start site region 150030
Tssr150031 18 10618040 to 10618051 11 + TSS region transcription start site region 150031
Abhd3 18 10644411 to 10706784 62373 - protein coding gene abhydrolase domain containing 3
Cpgi9704 18 10706105 to 10706585 480 CpG island CpG island 9704
Tssr152434 18 10706688 to 10706694 6 - TSS region transcription start site region 152434
Tssr5245 18 10706701 to 10706768 67 - TSS region transcription start site region 5245
4930563E18Rik 18 10706860 to 10711832 4972 + lincRNA gene RIKEN cDNA 4930563E18 gene
Tssr150032 18 10715048 to 10715050 2 + TSS region transcription start site region 150032
Cpgi9705 18 10725299 to 10727071 1772 CpG island CpG island 9705
Tssr150033 18 10725511 to 10725522 11 + TSS region transcription start site region 150033
Tssr150034 18 10725530 to 10725564 34 + TSS region transcription start site region 150034
Mib1 18 10725553 to 10818578 93025 + protein coding gene mindbomb E3 ubiquitin protein ligase 1
Tssr150035 18 10725577 to 10725607 30 + TSS region transcription start site region 150035
Tssr150036 18 10725614 to 10725636 22 + TSS region transcription start site region 150036
Tssr150037 18 10725651 to 10725665 14 + TSS region transcription start site region 150037
Tssr150038 18 10726245 to 10726271 26 + TSS region transcription start site region 150038
Tssr152435 18 10735286 to 10735292 6 - TSS region transcription start site region 152435
4833420D23Rik 18 10747860 to 10748964 1104 unclassified gene RIKEN cDNA 4833420D23 gene
Tssr150039 18 10747875 to 10747879 4 + TSS region transcription start site region 150039
Gm25116 18 10757536 to 10757657 121 + snoRNA gene predicted gene, 25116
Tssr150040 18 10764564 to 10764568 4 + TSS region transcription start site region 150040
Mir133a-1hg 18 10781723 to 10785883 4160 - antisense lncRNA gene Mir133a-1, Mir1b and Mir1a-2 host gene
Tssr150041 18 10782310 to 10782317 7 + TSS region transcription start site region 150041
Tssr152436 18 10782908 to 10782912 4 - TSS region transcription start site region 152436
Mir133a-1 18 10782909 to 10782976 67 - miRNA gene microRNA 133a-1
Mir1b 18 10785446 to 10785567 121 + miRNA gene microRNA 1b
Mirc18 18 10785446 to 10785567 121 complex/cluster/region microRNA cluster 18, including Mir1b through Mir1a-2
Tssr152437 18 10785478 to 10785482 4 - TSS region transcription start site region 152437
Mir1a-2 18 10785481 to 10785552 71 - miRNA gene microRNA 1a-2
Tssr152438 18 10787684 to 10787699 15 - TSS region transcription start site region 152438
Tssr150042 18 10812606 to 10812621 15 + TSS region transcription start site region 150042
Tssr150043 18 10815725 to 10815729 4 + TSS region transcription start site region 150043
Tssr150044 18 10816074 to 10816083 9 + TSS region transcription start site region 150044
Tssr150045 18 10816669 to 10816673 4 + TSS region transcription start site region 150045
Gm18764 18 10859680 to 10860433 753 + pseudogene predicted gene, 18764
Gm35814 18 10888414 to 10993877 105463 + lncRNA gene predicted gene, 35814
Tssr150046 18 10920922 to 10920942 20 + TSS region transcription start site region 150046
Tssr150047 18 10921041 to 10921061 20 + TSS region transcription start site region 150047
Tssr150048 18 10921068 to 10921089 21 + TSS region transcription start site region 150048
Tssr150049 18 10921953 to 10921958 5 + TSS region transcription start site region 150049
Gm7575 18 10928884 to 10931510 2626 + pseudogene predicted gene 7575
9130001E16Rik 18 11003688 to 11008672 4984 - lncRNA gene RIKEN cDNA 9130001E16 gene
9530025H10Rik 18 11007430 to 11008634 1204 unclassified gene RIKEN cDNA 9530025H10 gene
2210016H18Rik 18 11016764 to 11017871 1107 unclassified gene RIKEN cDNA 2210016H18 gene
2600014K08Rik 18 11019049 to 11019820 771 unclassified gene RIKEN cDNA 2600014K08 gene
Tssr150050 18 11034680 to 11034684 4 + TSS region transcription start site region 150050
1010001N08Rik 18 11042037 to 11052567 10530 - lncRNA gene RIKEN cDNA 1010001N08 gene
Tssr150051 18 11047578 to 11047617 39 + TSS region transcription start site region 150051
Tssr150052 18 11047621 to 11047639 18 + TSS region transcription start site region 150052
Cpgi9706 18 11048096 to 11048741 645 CpG island CpG island 9706
Tssr152439 18 11048650 to 11048662 12 - TSS region transcription start site region 152439
Tssr152440 18 11048667 to 11048685 18 - TSS region transcription start site region 152440
Tssr152441 18 11050688 to 11050702 14 - TSS region transcription start site region 152441
Tssr152442 18 11051329 to 11051369 40 - TSS region transcription start site region 152442
Tssr152443 18 11051373 to 11051387 14 - TSS region transcription start site region 152443
Tssr152444 18 11051409 to 11051437 28 - TSS region transcription start site region 152444
Tssr152445 18 11051438 to 11051453 15 - TSS region transcription start site region 152445
Tssr152446 18 11051479 to 11051502 23 - TSS region transcription start site region 152446
Tssr152447 18 11051545 to 11051556 11 - TSS region transcription start site region 152447
Tssr152448 18 11051925 to 11051942 17 - TSS region transcription start site region 152448
Cpgi9707 18 11052049 to 11055533 3484 CpG island CpG island 9707
Tssr152449 18 11052344 to 11052358 14 - TSS region transcription start site region 152449
Tssr150053 18 11052458 to 11052479 21 + TSS region transcription start site region 150053
Tssr150054 18 11052487 to 11052510 23 + TSS region transcription start site region 150054
Gata6 18 11052510 to 11085636 33126 + protein coding gene GATA binding protein 6
Tssr150055 18 11052518 to 11052527 9 + TSS region transcription start site region 150055
Tssr150056 18 11052608 to 11052635 27 + TSS region transcription start site region 150056
Tssr150057 18 11052644 to 11052661 17 + TSS region transcription start site region 150057
Tssr152450 18 11052859 to 11052892 33 - TSS region transcription start site region 152450
Tssr150058 18 11053242 to 11053292 50 + TSS region transcription start site region 150058
Tssr150059 18 11053308 to 11053319 11 + TSS region transcription start site region 150059
Tssr150060 18 11053324 to 11053342 18 + TSS region transcription start site region 150060
Tssr150061 18 11053347 to 11053385 38 + TSS region transcription start site region 150061
Tssr150062 18 11054062 to 11054074 12 + TSS region transcription start site region 150062
Cpgi9708 18 11058945 to 11059310 365 CpG island CpG island 9708
Tssr150063 18 11059014 to 11059029 15 + TSS region transcription start site region 150063
Tssr150064 18 11059042 to 11059053 11 + TSS region transcription start site region 150064
Tssr150065 18 11084122 to 11084131 9 + TSS region transcription start site region 150065
D18Mit31 18 11196303 to 11196417 114 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 31
Cpgi9709 18 11239641 to 11240267 626 CpG island CpG island 9709
Cpgi9710 18 11351902 to 11352534 632 CpG island CpG island 9710
Gm35918 18 11399652 to 11401895 2243 - lncRNA gene predicted gene, 35918
Gm50067 18 11624915 to 11625507 592 + pseudogene predicted gene, 50067
Rbbp8 18 11633276 to 11743207 109931 + protein coding gene retinoblastoma binding protein 8, endonuclease
Tssr150066 18 11633340 to 11633357 17 + TSS region transcription start site region 150066
Tssr150067 18 11633363 to 11633381 18 + TSS region transcription start site region 150067
Gm50069 18 11655420 to 11657784 2364 - antisense lncRNA gene predicted gene, 50069
Cpgi9711 18 11656997 to 11658348 1351 CpG island CpG island 9711
Tssr150068 18 11657352 to 11657486 134 + TSS region transcription start site region 150068
Tssr150069 18 11657489 to 11657502 13 + TSS region transcription start site region 150069
Tssr150070 18 11657521 to 11657553 32 + TSS region transcription start site region 150070
Tssr152451 18 11657745 to 11657756 11 - TSS region transcription start site region 152451
Tssr150071 18 11657831 to 11657876 45 + TSS region transcription start site region 150071