Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:9405325-10085333

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccny 18 9314044 to 9450150 136106 - protein coding gene cyclin Y
Tssr152387 18 9414745 to 9414749 4 - TSS region transcription start site region 152387
Gm50055 18 9434823 to 9436850 2027 - unclassified gene predicted gene, 50055
Tssr152388 18 9437455 to 9437477 22 - TSS region transcription start site region 152388
Cpgi9691 18 9449073 to 9450559 1486 CpG island CpG island 9691
Tssr152389 18 9449593 to 9449600 7 - TSS region transcription start site region 152389
Tssr152390 18 9449947 to 9450043 96 - TSS region transcription start site region 152390
Tssr152391 18 9450050 to 9450061 11 - TSS region transcription start site region 152391
Tssr152392 18 9450066 to 9450075 9 - TSS region transcription start site region 152392
Tssr152393 18 9450097 to 9450161 64 - TSS region transcription start site region 152393
Tssr152394 18 9450163 to 9450174 11 - TSS region transcription start site region 152394
Tssr149995 18 9450277 to 9450298 21 + TSS region transcription start site region 149995
Gm35458 18 9465050 to 9471153 6103 - lncRNA gene predicted gene, 35458
Tssr152395 18 9485344 to 9485349 5 - TSS region transcription start site region 152395
Tssr149996 18 9485620 to 9485655 35 + TSS region transcription start site region 149996
Tssr149997 18 9487587 to 9487595 8 + TSS region transcription start site region 149997
Tssr149998 18 9490007 to 9490010 3 + TSS region transcription start site region 149998
Tssr149999 18 9494667 to 9494677 10 + TSS region transcription start site region 149999
Gm7527 18 9495621 to 9496509 888 + pseudogene predicted gene 7527
Tssr150000 18 9505516 to 9505527 11 + TSS region transcription start site region 150000
Tssr150001 18 9505678 to 9505686 8 + TSS region transcription start site region 150001
Tssr152396 18 9508207 to 9508243 36 - TSS region transcription start site region 152396
Tssr152397 18 9508510 to 9508534 24 - TSS region transcription start site region 152397
Gm7532 18 9538258 to 9539766 1508 + pseudogene predicted gene 7532
Gm7274 18 9543831 to 9545889 2058 + pseudogene predicted gene 7274
Gm46641 18 9550654 to 9551800 1146 + pseudogene predicted gene, 46641
Tssr152398 18 9552694 to 9552704 10 - TSS region transcription start site region 152398
Cpgi9692 18 9554976 to 9555297 321 CpG island CpG island 9692
Gm46616 18 9591058 to 9591433 375 - pseudogene predicted gene, 46616
Gm22765 18 9614314 to 9614441 127 + snoRNA gene predicted gene, 22765
Cetn1 18 9618419 to 9619469 1050 - protein coding gene centrin 1
Cpgi9693 18 9619341 to 9619584 243 CpG island CpG island 9693
Tssr152399 18 9619423 to 9619434 11 - TSS region transcription start site region 152399
Tssr152400 18 9619436 to 9619452 16 - TSS region transcription start site region 152400
Tssr152401 18 9619460 to 9619482 22 - TSS region transcription start site region 152401
Gm4834 18 9628862 to 9632479 3617 + pseudogene predicted gene 4834
Cpgi9694 18 9707223 to 9708347 1124 CpG island CpG island 9694
Tssr150002 18 9707612 to 9707638 26 + TSS region transcription start site region 150002
Tssr150003 18 9707639 to 9707661 22 + TSS region transcription start site region 150003
Colec12 18 9707648 to 9877995 170347 + protein coding gene collectin sub-family member 12
Cpgi9695 18 9708652 to 9708821 169 CpG island CpG island 9695
Gm50080 18 9711293 to 9714534 3241 + unclassified gene predicted gene, 50080
Gm50078 18 9716439 to 9719169 2730 + unclassified gene predicted gene, 50078
Tssr150004 18 9722531 to 9722536 5 + TSS region transcription start site region 150004
Tssr150005 18 9724734 to 9724745 11 + TSS region transcription start site region 150005
Gm17430 18 9726205 to 9726670 465 - protein coding gene predicted gene, 17430
Tssr150006 18 9728073 to 9728077 4 + TSS region transcription start site region 150006
Tssr150007 18 9745193 to 9745207 14 + TSS region transcription start site region 150007
Tssr150008 18 9745232 to 9745244 12 + TSS region transcription start site region 150008
Tssr150009 18 9745325 to 9745333 8 + TSS region transcription start site region 150009
Tssr150010 18 9745470 to 9745517 47 + TSS region transcription start site region 150010
Tssr150011 18 9745539 to 9745583 44 + TSS region transcription start site region 150011
Tssr150012 18 9746672 to 9746683 11 + TSS region transcription start site region 150012
Gm7497 18 9748732 to 9749724 992 + pseudogene predicted gene 7497
Gm23350 18 9763160 to 9763262 102 - snRNA gene predicted gene, 23350
Tssr150013 18 9769968 to 9770017 49 + TSS region transcription start site region 150013
Tssr150014 18 9781844 to 9781848 4 + TSS region transcription start site region 150014
Tssr150015 18 9799143 to 9799178 35 + TSS region transcription start site region 150015
Gm50079 18 9818784 to 9820462 1678 + unclassified gene predicted gene, 50079
Gm23637 18 9827026 to 9827119 93 - miRNA gene predicted gene, 23637
Tssr150016 18 9848701 to 9848740 39 + TSS region transcription start site region 150016
Tssr152402 18 9866767 to 9866779 12 - TSS region transcription start site region 152402
Tssr150017 18 9877165 to 9877180 15 + TSS region transcription start site region 150017
Gm2424 18 9909196 to 9910499 1303 + pseudogene predicted gene 2424
Gm5501 18 9916927 to 9917758 831 + pseudogene predicted gene 5501
Cpgi9696 18 9957731 to 9958633 902 CpG island CpG island 9696
Tssr150018 18 9957947 to 9957987 40 + TSS region transcription start site region 150018
Tssr150019 18 9958147 to 9958186 39 + TSS region transcription start site region 150019
Thoc1 18 9958180 to 9995484 37304 + protein coding gene THO complex 1
Tssr150020 18 9958187 to 9958192 5 + TSS region transcription start site region 150020
D18Ertd693e 18 9980009 to 9980214 205 DNA segment DNA segment, Chr 18, ERATO Doi 693, expressed
Tssr152403 18 10012787 to 10012792 5 - TSS region transcription start site region 152403
Tssr152404 18 10016882 to 10016886 4 - TSS region transcription start site region 152404
Cpgi9697 18 10029584 to 10030187 603 CpG island CpG island 9697
Tssr152405 18 10029983 to 10029996 13 - TSS region transcription start site region 152405
Tssr152406 18 10030017 to 10030146 129 - TSS region transcription start site region 152406
Usp14 18 10030149 to 9993615 -36534 - protein coding gene ubiquitin specific peptidase 14
D18Mit221.2 18 10033826 to 10033942 116 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 221.2
D18Mit221 18 10033914 to 10034036 122 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 221
Cpgi9698 18 10052010 to 10052595 585 CpG island CpG island 9698
Tssr152407 18 10052152 to 10052162 10 - TSS region transcription start site region 152407
Rock1 18 10064401 to 10181792 117391 - protein coding gene Rho-associated coiled-coil containing protein kinase 1
Tssr152408 18 10065838 to 10065840 2 - TSS region transcription start site region 152408
Tssr152409 18 10083179 to 10083197 18 - TSS region transcription start site region 152409