Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:8959947-9940043

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm7523 18 8967744 to 8968796 1052 + pseudogene predicted gene 7523
Gm18526 18 9099708 to 9100255 547 - pseudogene predicted gene, 18526
Cpgi9689 18 9212018 to 9215049 3031 CpG island CpG island 9689
Tssr149993 18 9212154 to 9212171 17 + TSS region transcription start site region 149993
Tssr5244 18 9212184 to 9212193 9 + TSS region transcription start site region 5244
Tssr149994 18 9212197 to 9212200 3 + TSS region transcription start site region 149994
Fzd8 18 9212856 to 9216201 3345 + protein coding gene frizzled class receptor 8
Gjd4 18 9278607 to 9282809 4202 - protein coding gene gap junction protein, delta 4
Cpgi9690 18 9280476 to 9280896 420 CpG island CpG island 9690
Tssr152381 18 9282718 to 9282739 21 - TSS region transcription start site region 152381
Tssr152382 18 9282754 to 9282766 12 - TSS region transcription start site region 152382
Gm50053 18 9304635 to 9305080 445 + pseudogene predicted gene, 50053
Ccny 18 9314044 to 9450150 136106 - protein coding gene cyclin Y
Tssr152383 18 9315369 to 9315381 12 - TSS region transcription start site region 152383
Tssr152384 18 9329954 to 9329958 4 - TSS region transcription start site region 152384
Tssr152385 18 9376803 to 9376807 4 - TSS region transcription start site region 152385
Tssr152386 18 9400373 to 9400378 5 - TSS region transcription start site region 152386
Tssr152387 18 9414745 to 9414749 4 - TSS region transcription start site region 152387
Gm50055 18 9434823 to 9436850 2027 - unclassified gene predicted gene, 50055
Tssr152388 18 9437455 to 9437477 22 - TSS region transcription start site region 152388
Cpgi9691 18 9449073 to 9450559 1486 CpG island CpG island 9691
Tssr152389 18 9449593 to 9449600 7 - TSS region transcription start site region 152389
Tssr152390 18 9449947 to 9450043 96 - TSS region transcription start site region 152390
Tssr152391 18 9450050 to 9450061 11 - TSS region transcription start site region 152391
Tssr152392 18 9450066 to 9450075 9 - TSS region transcription start site region 152392
Tssr152393 18 9450097 to 9450161 64 - TSS region transcription start site region 152393
Tssr152394 18 9450163 to 9450174 11 - TSS region transcription start site region 152394
Tssr149995 18 9450277 to 9450298 21 + TSS region transcription start site region 149995
Gm35458 18 9465050 to 9471153 6103 - lncRNA gene predicted gene, 35458
Tssr152395 18 9485344 to 9485349 5 - TSS region transcription start site region 152395
Tssr149996 18 9485620 to 9485655 35 + TSS region transcription start site region 149996
Tssr149997 18 9487587 to 9487595 8 + TSS region transcription start site region 149997
Tssr149998 18 9490007 to 9490010 3 + TSS region transcription start site region 149998
Tssr149999 18 9494667 to 9494677 10 + TSS region transcription start site region 149999
Gm7527 18 9495621 to 9496509 888 + pseudogene predicted gene 7527
Tssr150000 18 9505516 to 9505527 11 + TSS region transcription start site region 150000
Tssr150001 18 9505678 to 9505686 8 + TSS region transcription start site region 150001
Tssr152396 18 9508207 to 9508243 36 - TSS region transcription start site region 152396
Tssr152397 18 9508510 to 9508534 24 - TSS region transcription start site region 152397
Gm7532 18 9538258 to 9539766 1508 + pseudogene predicted gene 7532
Gm7274 18 9543831 to 9545889 2058 + pseudogene predicted gene 7274
Gm46641 18 9550654 to 9551800 1146 + pseudogene predicted gene, 46641
Tssr152398 18 9552694 to 9552704 10 - TSS region transcription start site region 152398
Cpgi9692 18 9554976 to 9555297 321 CpG island CpG island 9692
Gm46616 18 9591058 to 9591433 375 - pseudogene predicted gene, 46616
Gm22765 18 9614314 to 9614441 127 + snoRNA gene predicted gene, 22765
Cetn1 18 9618419 to 9619469 1050 - protein coding gene centrin 1
Cpgi9693 18 9619341 to 9619584 243 CpG island CpG island 9693
Tssr152399 18 9619423 to 9619434 11 - TSS region transcription start site region 152399
Tssr152400 18 9619436 to 9619452 16 - TSS region transcription start site region 152400
Tssr152401 18 9619460 to 9619482 22 - TSS region transcription start site region 152401
Gm4834 18 9628862 to 9632479 3617 + pseudogene predicted gene 4834
Cpgi9694 18 9707223 to 9708347 1124 CpG island CpG island 9694
Tssr150002 18 9707612 to 9707638 26 + TSS region transcription start site region 150002
Tssr150003 18 9707639 to 9707661 22 + TSS region transcription start site region 150003
Colec12 18 9707648 to 9877995 170347 + protein coding gene collectin sub-family member 12
Cpgi9695 18 9708652 to 9708821 169 CpG island CpG island 9695
Gm50080 18 9711293 to 9714534 3241 + unclassified gene predicted gene, 50080
Gm50078 18 9716439 to 9719169 2730 + unclassified gene predicted gene, 50078
Tssr150004 18 9722531 to 9722536 5 + TSS region transcription start site region 150004
Tssr150005 18 9724734 to 9724745 11 + TSS region transcription start site region 150005
Gm17430 18 9726205 to 9726670 465 - protein coding gene predicted gene, 17430
Tssr150006 18 9728073 to 9728077 4 + TSS region transcription start site region 150006
Tssr150007 18 9745193 to 9745207 14 + TSS region transcription start site region 150007
Tssr150008 18 9745232 to 9745244 12 + TSS region transcription start site region 150008
Tssr150009 18 9745325 to 9745333 8 + TSS region transcription start site region 150009
Tssr150010 18 9745470 to 9745517 47 + TSS region transcription start site region 150010
Tssr150011 18 9745539 to 9745583 44 + TSS region transcription start site region 150011
Tssr150012 18 9746672 to 9746683 11 + TSS region transcription start site region 150012
Gm7497 18 9748732 to 9749724 992 + pseudogene predicted gene 7497
Gm23350 18 9763160 to 9763262 102 - snRNA gene predicted gene, 23350
Tssr150013 18 9769968 to 9770017 49 + TSS region transcription start site region 150013
Tssr150014 18 9781844 to 9781848 4 + TSS region transcription start site region 150014
Tssr150015 18 9799143 to 9799178 35 + TSS region transcription start site region 150015
Gm50079 18 9818784 to 9820462 1678 + unclassified gene predicted gene, 50079
Gm23637 18 9827026 to 9827119 93 - miRNA gene predicted gene, 23637
Tssr150016 18 9848701 to 9848740 39 + TSS region transcription start site region 150016
Tssr152402 18 9866767 to 9866779 12 - TSS region transcription start site region 152402
Tssr150017 18 9877165 to 9877180 15 + TSS region transcription start site region 150017
Gm2424 18 9909196 to 9910499 1303 + pseudogene predicted gene 2424
Gm5501 18 9916927 to 9917758 831 + pseudogene predicted gene 5501