Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:89180298-91840316

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sicd1 18 80132049 to 89572790 9440741 QTL seizure-induced cell death 1
Tssr152269 18 89197191 to 89197198 7 + TSS region transcription start site region 152269
Tssr152270 18 89197241 to 89197252 11 + TSS region transcription start site region 152270
Tssr152271 18 89197314 to 89197344 30 + TSS region transcription start site region 152271
Tssr152272 18 89197421 to 89197445 24 + TSS region transcription start site region 152272
Cd226 18 89197431 to 89270201 72770 + protein coding gene CD226 antigen
Tssr152273 18 89197453 to 89197459 6 + TSS region transcription start site region 152273
Tssr152274 18 89206100 to 89206106 6 + TSS region transcription start site region 152274
Tssr152275 18 89206558 to 89206573 15 + TSS region transcription start site region 152275
Tssr152276 18 89206602 to 89206613 11 + TSS region transcription start site region 152276
9330132A10Rik 18 89293502 to 89297229 3727 - pseudogene RIKEN cDNA 9330132A10 gene
Dok6 18 89301135 to 89769136 468001 - protein coding gene docking protein 6
D18Mit196 18 89318282 to 89318398 116 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 196
Gm16296 18 89534040 to 89534364 324 - pseudogene predicted gene 16296
Gm16297 18 89534603 to 89535061 458 + pseudogene predicted gene 16297
Gm18279 18 89536907 to 89602441 65534 - pseudogene predicted gene, 18279
D18Mit25 18 89572666 to 89572790 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 25
Gm22694 18 89733005 to 89733074 69 + miRNA gene predicted gene, 22694
Cpgi10359 18 89768847 to 89769965 1118 CpG island CpG island 10359
E330033J05Rik 18 89769030 to 89770197 1167 unclassified non-coding RNA gene RIKEN cDNA E330033J05 gene
Tssr154167 18 89769479 to 89769558 79 - TSS region transcription start site region 154167
Gm41800 18 89802932 to 89852645 49713 - lncRNA gene predicted gene, 41800
Gm27037 18 89943353 to 89944312 959 - pseudogene predicted gene, 27037
Gm6173 18 90017824 to 90019079 1255 - pseudogene predicted gene 6173
Gm23859 18 90228899 to 90228962 63 + snRNA gene predicted gene, 23859
Eif3s6-ps2 18 90311825 to 90312043 218 - pseudogene eukaryotic translation initiation factor 3, subunit 6, pseudogene 2
Gm7674 18 90321877 to 90322876 999 - pseudogene predicted gene 7674
Gm18280 18 90417064 to 90477994 60930 - pseudogene predicted gene, 18280
Tssr5397 18 90419010 to 90419025 15 + TSS region transcription start site region 5397
Gm25418 18 90504615 to 90504743 128 + snoRNA gene predicted gene, 25418
Cpgi10360 18 90509895 to 90510566 671 CpG island CpG island 10360
Tssr152277 18 90510122 to 90510174 52 + TSS region transcription start site region 152277
Tmx3 18 90510154 to 90543267 33113 + protein coding gene thioredoxin-related transmembrane protein 3
Tssr152278 18 90510184 to 90510224 40 + TSS region transcription start site region 152278
Tssr152279 18 90510231 to 90510251 20 + TSS region transcription start site region 152279
Tssr152280 18 90510270 to 90510288 18 + TSS region transcription start site region 152280
Tssr152281 18 90510298 to 90510316 18 + TSS region transcription start site region 152281
Tssr152282 18 90512873 to 90512877 4 + TSS region transcription start site region 152282
Tssr152283 18 90523531 to 90523539 8 + TSS region transcription start site region 152283
Tssr152284 18 90534899 to 90534911 12 + TSS region transcription start site region 152284
Tssr152285 18 90541430 to 90541444 14 + TSS region transcription start site region 152285
D18Mit16 18 90570952 to 90571061 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 16
Tssr152286 18 90579771 to 90579845 74 + TSS region transcription start site region 152286
Gm45871 18 90579777 to 90592522 12745 + protein coding gene predicted gene 45871
Gm20039 18 90585472 to 90585865 393 + pseudogene predicted gene, 20039