Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:87710298-93310316

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sicd1 18 80132049 to 89572790 9440741 QTL seizure-induced cell death 1
Tssr152262 18 87756280 to 87756288 8 + TSS region transcription start site region 152262
Gm5096 18 87756286 to 87758143 1857 + pseudogene predicted gene 5096
Tssr152263 18 87757693 to 87757697 4 + TSS region transcription start site region 152263
Gm24987 18 87925431 to 87925564 133 - snoRNA gene predicted gene, 24987
Gm32437 18 88213318 to 88219532 6214 - lncRNA gene predicted gene, 32437
D18Mit102 18 88426664 to 88426810 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 102
D18Mit102.2 18 88426772 to 88426897 125 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 102.2
Gm32489 18 88584503 to 88600046 15543 - lncRNA gene predicted gene, 32489
Tssr152264 18 88587462 to 88587479 17 + TSS region transcription start site region 152264
Gm7662 18 88658004 to 88658614 610 - pseudogene predicted gene 7662
Gm6409 18 88831729 to 88832581 852 - pseudogene predicted gene 6409
Socs6 18 88865169 to 88894350 29181 - protein coding gene suppressor of cytokine signaling 6
Tssr154159 18 88866265 to 88866268 3 - TSS region transcription start site region 154159
Tssr154160 18 88866780 to 88866807 27 - TSS region transcription start site region 154160
Tssr154161 18 88867193 to 88867213 20 - TSS region transcription start site region 154161
Cpgi10357 18 88893737 to 88894564 827 CpG island CpG island 10357
Tssr154162 18 88894203 to 88894215 12 - TSS region transcription start site region 154162
Tssr154163 18 88894292 to 88894319 27 - TSS region transcription start site region 154163
Tssr154164 18 88894323 to 88894371 48 - TSS region transcription start site region 154164
Tssr152265 18 88894457 to 88894466 9 + TSS region transcription start site region 152265
Tssr154165 18 88927447 to 88927481 34 - TSS region transcription start site region 154165
Tssr154166 18 88952787 to 88952805 18 - TSS region transcription start site region 154166
Cpgi10358 18 88971625 to 88972339 714 CpG island CpG island 10358
Rttn 18 88971790 to 89131013 159223 + protein coding gene rotatin
Tssr152266 18 88972002 to 88972040 38 + TSS region transcription start site region 152266
Mir6359 18 88972030 to 88972110 80 + miRNA gene microRNA 6359
Tssr152267 18 88994607 to 88994608 1 + TSS region transcription start site region 152267
D18Mit145 18 89169284 to 89169481 197 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 145
D18Mit130 18 89175475 to 89175594 119 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 130
Tssr152268 18 89176965 to 89176989 24 + TSS region transcription start site region 152268
Tssr152269 18 89197191 to 89197198 7 + TSS region transcription start site region 152269
Tssr152270 18 89197241 to 89197252 11 + TSS region transcription start site region 152270
Tssr152271 18 89197314 to 89197344 30 + TSS region transcription start site region 152271
Tssr152272 18 89197421 to 89197445 24 + TSS region transcription start site region 152272
Cd226 18 89197431 to 89270201 72770 + protein coding gene CD226 antigen
Tssr152273 18 89197453 to 89197459 6 + TSS region transcription start site region 152273
Tssr152274 18 89206100 to 89206106 6 + TSS region transcription start site region 152274
Tssr152275 18 89206558 to 89206573 15 + TSS region transcription start site region 152275
Tssr152276 18 89206602 to 89206613 11 + TSS region transcription start site region 152276
9330132A10Rik 18 89293502 to 89297229 3727 - pseudogene RIKEN cDNA 9330132A10 gene
Dok6 18 89301135 to 89769136 468001 - protein coding gene docking protein 6
D18Mit196 18 89318282 to 89318398 116 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 196
Gm16296 18 89534040 to 89534364 324 - pseudogene predicted gene 16296
Gm16297 18 89534603 to 89535061 458 + pseudogene predicted gene 16297
Gm18279 18 89536907 to 89602441 65534 - pseudogene predicted gene, 18279
D18Mit25 18 89572666 to 89572790 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 25
Gm22694 18 89733005 to 89733074 69 + miRNA gene predicted gene, 22694
Cpgi10359 18 89768847 to 89769965 1118 CpG island CpG island 10359
E330033J05Rik 18 89769030 to 89770197 1167 unclassified non-coding RNA gene RIKEN cDNA E330033J05 gene
Tssr154167 18 89769479 to 89769558 79 - TSS region transcription start site region 154167
Gm41800 18 89802932 to 89852645 49713 - lncRNA gene predicted gene, 41800
Gm27037 18 89943353 to 89944312 959 - pseudogene predicted gene, 27037
Gm6173 18 90017824 to 90019079 1255 - pseudogene predicted gene 6173
Gm23859 18 90228899 to 90228962 63 + snRNA gene predicted gene, 23859
Eif3s6-ps2 18 90311825 to 90312043 218 - pseudogene eukaryotic translation initiation factor 3, subunit 6, pseudogene 2
Gm7674 18 90321877 to 90322876 999 - pseudogene predicted gene 7674
Gm18280 18 90417064 to 90477994 60930 - pseudogene predicted gene, 18280
Tssr5397 18 90419010 to 90419025 15 + TSS region transcription start site region 5397
Gm25418 18 90504615 to 90504743 128 + snoRNA gene predicted gene, 25418
Cpgi10360 18 90509895 to 90510566 671 CpG island CpG island 10360
Tssr152277 18 90510122 to 90510174 52 + TSS region transcription start site region 152277
Tmx3 18 90510154 to 90543267 33113 + protein coding gene thioredoxin-related transmembrane protein 3
Tssr152278 18 90510184 to 90510224 40 + TSS region transcription start site region 152278
Tssr152279 18 90510231 to 90510251 20 + TSS region transcription start site region 152279
Tssr152280 18 90510270 to 90510288 18 + TSS region transcription start site region 152280
Tssr152281 18 90510298 to 90510316 18 + TSS region transcription start site region 152281
Tssr152282 18 90512873 to 90512877 4 + TSS region transcription start site region 152282
Tssr152283 18 90523531 to 90523539 8 + TSS region transcription start site region 152283
Tssr152284 18 90534899 to 90534911 12 + TSS region transcription start site region 152284
Tssr152285 18 90541430 to 90541444 14 + TSS region transcription start site region 152285
D18Mit16 18 90570952 to 90571061 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 16
Tssr152286 18 90579771 to 90579845 74 + TSS region transcription start site region 152286
Gm45871 18 90579777 to 90592522 12745 + protein coding gene predicted gene 45871
Gm20039 18 90585472 to 90585865 393 + pseudogene predicted gene, 20039