Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:82942389-85882398

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obsty4 18 39486861 to 84620653 45133792 QTL obesity 4
Szs4 18 54842801 to 85496018 30653217 QTL seizure susceptibility 4
Sicd4 18 69672205 to 85496018 15823813 QTL seizure-induced cell death 4
Pas7 18 72612523 to 84126470 11513947 QTL pulmonary adenoma susceptibility 7
Idd21.1 18 74429267 to 84126470 9697203 QTL insulin dependent diabetes susceptibility 21.1
Zfp516 18 82910879 to 83005314 94435 + protein coding gene zinc finger protein 516
Tssr152197 18 82972771 to 82972793 22 + TSS region transcription start site region 152197
Tssr5391 18 82997082 to 82997087 5 + TSS region transcription start site region 5391
Gm41795 18 83011180 to 83032019 20839 + lncRNA gene predicted gene, 41795
D18Mit1000 18 83037847 to 83037986 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 1000
Gm10523 18 83048054 to 83065006 16952 unclassified non-coding RNA gene predicted gene 10523
Gm46636 18 83052798 to 83098988 46190 + lncRNA gene predicted gene, 46636
Cpgi10329 18 83059877 to 83060245 368 CpG island CpG island 10329
Cpgi10330 18 83063400 to 83063571 171 CpG island CpG island 10330
1700095A13Rik 18 83106528 to 83107860 1332 - lincRNA gene RIKEN cDNA 1700095A13 gene
Tssr154098 18 83107857 to 83107869 12 - TSS region transcription start site region 154098
Tssr152198 18 83124715 to 83124722 7 + TSS region transcription start site region 152198
Cpgi10331 18 83134699 to 83134854 155 CpG island CpG island 10331
Gm41796 18 83179757 to 83180574 817 + lncRNA gene predicted gene, 41796
Gm31089 18 83218089 to 83272680 54591 + lncRNA gene predicted gene, 31089
Cpgi10332 18 83232300 to 83232451 151 CpG island CpG island 10332
Tssr154099 18 83238601 to 83238602 1 - TSS region transcription start site region 154099
Gm31206 18 83283492 to 83287786 4294 + lncRNA gene predicted gene, 31206
4921531P14Rik 18 83292792 to 83325884 33092 - lncRNA gene RIKEN cDNA 4921531P14 gene
Gm41797 18 83295153 to 83299815 4662 + lncRNA gene predicted gene, 41797
Cpgi10333 18 83325784 to 83326270 486 CpG island CpG island 10333
Tssr154100 18 83325863 to 83325886 23 - TSS region transcription start site region 154100
Gm24720 18 83355199 to 83355364 165 - snRNA gene predicted gene, 24720
Gm31265 18 83359011 to 83380930 21919 + lncRNA gene predicted gene, 31265
Tssr152199 18 83359018 to 83359033 15 + TSS region transcription start site region 152199
Gm31503 18 83361235 to 83373741 12506 - lncRNA gene predicted gene, 31503
D18Mit216 18 83415754 to 83415877 123 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 216
4933401L05Rik 18 83417653 to 83423478 5825 unclassified gene RIKEN cDNA 4933401L05 gene
Gm41798 18 83430583 to 83438979 8396 + lncRNA gene predicted gene, 41798
Gm31565 18 83482021 to 83484873 2852 - lncRNA gene predicted gene, 31565
Gm7569 18 83487854 to 83488835 981 - pseudogene predicted gene 7569
Tssr154101 18 83488831 to 83488836 5 - TSS region transcription start site region 154101
Tssr154102 18 83525291 to 83525305 14 - TSS region transcription start site region 154102
Tssr5392 18 83559733 to 83559741 8 + TSS region transcription start site region 5392
Gm31621 18 83628280 to 83637968 9688 - lncRNA gene predicted gene, 31621
Tssr154103 18 83637935 to 83637943 8 - TSS region transcription start site region 154103
D18Mit195 18 83697900 to 83698122 222 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 195
D18Mit190 18 83719703 to 83719949 246 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 190
Tssr154104 18 83753405 to 83753409 4 - TSS region transcription start site region 154104
Tssr154105 18 83754182 to 83754206 24 - TSS region transcription start site region 154105
D18Mit6 18 83762723 to 83762865 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 6
D18Mit1 18 83762742 to 83762895 153 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 1
Tssr154106 18 83764939 to 83764985 46 - TSS region transcription start site region 154106
Tssr154107 18 83768068 to 83768084 16 - TSS region transcription start site region 154107
Tssr154108 18 83768104 to 83768109 5 - TSS region transcription start site region 154108
Tssr154109 18 83768125 to 83768147 22 - TSS region transcription start site region 154109
Tssr154110 18 83768148 to 83768151 3 - TSS region transcription start site region 154110
Tssr154111 18 83768165 to 83768172 7 - TSS region transcription start site region 154111
Tssr152200 18 83813003 to 83813009 6 + TSS region transcription start site region 152200
Tssr154112 18 83826781 to 83826807 26 - TSS region transcription start site region 154112
Tssr154113 18 83827603 to 83827608 5 - TSS region transcription start site region 154113
Tssr154114 18 83828051 to 83828081 30 - TSS region transcription start site region 154114
Tssr154115 18 83828093 to 83828114 21 - TSS region transcription start site region 154115
Tssr154116 18 83828489 to 83828517 28 - TSS region transcription start site region 154116
Cpgi10334 18 83859273 to 83859452 179 CpG island CpG island 10334
Gm31707 18 83943330 to 83959067 15737 + lncRNA gene predicted gene, 31707
Gm31792 18 83980608 to 84003622 23014 - lncRNA gene predicted gene, 31792
Tssr152201 18 83996324 to 83996329 5 + TSS region transcription start site region 152201
Cpgi10335 18 83996876 to 83997136 260 CpG island CpG island 10335
Tshz1 18 84011627 to 84086404 74777 - protein coding gene teashirt zinc finger family member 1
Tssr154117 18 84012362 to 84012396 34 - TSS region transcription start site region 154117
Tssr154118 18 84037396 to 84037401 5 - TSS region transcription start site region 154118
Tssr154119 18 84058095 to 84058112 17 - TSS region transcription start site region 154119
Cpgi10336 18 84085023 to 84086398 1375 CpG island CpG island 10336
Tssr154120 18 84085970 to 84085991 21 - TSS region transcription start site region 154120
Tssr154121 18 84086257 to 84086269 12 - TSS region transcription start site region 154121
Tssr154122 18 84086379 to 84086403 24 - TSS region transcription start site region 154122
Tssr154123 18 84086412 to 84086440 28 - TSS region transcription start site region 154123
Tssr154124 18 84086449 to 84086491 42 - TSS region transcription start site region 154124
Tssr154125 18 84086746 to 84086758 12 - TSS region transcription start site region 154125
Cpgi10337 18 84087221 to 84088999 1778 CpG island CpG island 10337
Tssr152202 18 84087647 to 84087687 40 + TSS region transcription start site region 152202
Tssr154126 18 84087702 to 84087716 14 - TSS region transcription start site region 154126
Tssr152203 18 84088077 to 84088178 101 + TSS region transcription start site region 152203
Zadh2 18 84088158 to 84097514 9356 + protein coding gene zinc binding alcohol dehydrogenase, domain containing 2
Tssr152204 18 84088186 to 84088206 20 + TSS region transcription start site region 152204
Tssr152205 18 84088218 to 84088243 25 + TSS region transcription start site region 152205
Tssr152206 18 84088680 to 84088693 13 + TSS region transcription start site region 152206
Tssr152207 18 84091814 to 84091827 13 + TSS region transcription start site region 152207
Cpgi10338 18 84091822 to 84092426 604 CpG island CpG island 10338
Gm31854 18 84097626 to 84100872 3246 - lncRNA gene predicted gene, 31854
Tssr154127 18 84099346 to 84099385 39 - TSS region transcription start site region 154127
Tssr5393 18 84101933 to 84101934 1 + TSS region transcription start site region 5393
Hdlq31 18 84126264 to 84126470 206 QTL HDL QTL 31
D18Mit4 18 84126264 to 84126470 206 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 4
Cpgi10339 18 84162455 to 84163174 719 CpG island CpG island 10339
Zfp407 18 84207701 to 84589539 381838 - protein coding gene zinc finger protein 407
Tssr154128 18 84243258 to 84243262 4 - TSS region transcription start site region 154128
Tssr5394 18 84251528 to 84251530 2 + TSS region transcription start site region 5394
D18Mit115 18 84260946 to 84261117 171 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 115
A130068F13Rik 18 84262945 to 84266500 3555 unclassified gene RIKEN cDNA A130068F13 gene
Tssr152208 18 84293188 to 84293205 17 + TSS region transcription start site region 152208
Tssr152209 18 84293219 to 84293236 17 + TSS region transcription start site region 152209
Tssr154129 18 84301280 to 84301314 34 - TSS region transcription start site region 154129
Tssr154130 18 84339533 to 84339552 19 - TSS region transcription start site region 154130
Gm37216 18 84372669 to 84376146 3477 - unclassified gene predicted gene, 37216
Tssr152210 18 84386124 to 84386125 1 + TSS region transcription start site region 152210
Tssr154131 18 84412389 to 84412398 9 - TSS region transcription start site region 154131
Tssr154132 18 84468645 to 84468648 3 - TSS region transcription start site region 154132
Gm31909 18 84476865 to 84485826 8961 - lncRNA gene predicted gene, 31909
Tssr154133 18 84518642 to 84518654 12 - TSS region transcription start site region 154133
Cpgi10340 18 84588564 to 84590174 1610 CpG island CpG island 10340
Tssr154134 18 84589460 to 84589486 26 - TSS region transcription start site region 154134
Tssr154135 18 84589491 to 84589527 36 - TSS region transcription start site region 154135
Tssr152211 18 84589781 to 84589808 27 + TSS region transcription start site region 152211
Tssr154136 18 84589916 to 84589943 27 - TSS region transcription start site region 154136
Cndp1 18 84610509 to 84650084 39575 - protein coding gene carnosine dipeptidase 1 (metallopeptidase M20 family)
D18Mit213 18 84620529 to 84620653 124 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 213
D18Mit214.2 18 84620744 to 84620884 140 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 214.2
D18Mit214 18 84620901 to 84621022 121 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 214
Tssr154137 18 84649924 to 84649953 29 - TSS region transcription start site region 154137
Gm7289 18 84658932 to 84659844 912 - pseudogene predicted gene 7289
Tssr154138 18 84659936 to 84659943 7 - TSS region transcription start site region 154138
Tssr154139 18 84664849 to 84664896 47 - TSS region transcription start site region 154139
Cndp2 18 84667470 to 84685633 18163 - protein coding gene CNDP dipeptidase 2 (metallopeptidase M20 family)
Cpgi10341 18 84669755 to 84669923 168 CpG island CpG island 10341
Tssr154140 18 84669875 to 84669887 12 - TSS region transcription start site region 154140
Cpgi10342 18 84670706 to 84670963 257 CpG island CpG island 10342
Tssr154141 18 84675297 to 84675317 20 - TSS region transcription start site region 154141
Tssr154142 18 84676674 to 84676679 5 - TSS region transcription start site region 154142
Tssr154143 18 84679097 to 84679106 9 - TSS region transcription start site region 154143
Tssr154144 18 84680587 to 84680591 4 - TSS region transcription start site region 154144
Tssr154145 18 84681966 to 84682032 66 - TSS region transcription start site region 154145
Tssr154146 18 84682045 to 84682056 11 - TSS region transcription start site region 154146
2900046H12Rik 18 84683156 to 84683723 567 unclassified gene RIKEN cDNA 2900046H12 gene
Cpgi10343 18 84684913 to 84686007 1094 CpG island CpG island 10343
Tssr154147 18 84685615 to 84685671 56 - TSS region transcription start site region 154147
Gm2390 18 84712531 to 84713664 1133 + pseudogene predicted gene 2390
Tssr152212 18 84712532 to 84712543 11 + TSS region transcription start site region 152212
D030046N08Rik 18 84719004 to 84720775 1771 - unclassified non-coding RNA gene RIKEN cDNA D030046N08 gene
Tssr152213 18 84719486 to 84719507 21 + TSS region transcription start site region 152213
Cpgi10344 18 84719683 to 84720967 1284 CpG island CpG island 10344
Dipk1c 18 84720019 to 84740436 20417 + protein coding gene divergent protein kinase domain 1C
Tssr152214 18 84720143 to 84720171 28 + TSS region transcription start site region 152214
Tssr154148 18 84720705 to 84720718 13 - TSS region transcription start site region 154148
Tssr154149 18 84720773 to 84720783 10 - TSS region transcription start site region 154149
Tssr152215 18 84720871 to 84720889 18 + TSS region transcription start site region 152215
Tssr152216 18 84721141 to 84721146 5 + TSS region transcription start site region 152216
Cpgi10345 18 84729205 to 84729563 358 CpG island CpG island 10345
Cpgi10346 18 84729974 to 84730399 425 CpG island CpG island 10346
Gm22014 18 84737102 to 84737391 289 - unclassified non-coding RNA gene predicted gene, 22014
Gm25005 18 84742162 to 84742317 155 - snRNA gene predicted gene, 25005
Gm17266 18 84798558 to 84838898 40340 - protein coding gene predicted gene, 17266
Gm22819 18 84822002 to 84822304 302 + unclassified non-coding RNA gene predicted gene, 22819
Cpgi10347 18 84838424 to 84838748 324 CpG island CpG island 10347
Tssr152217 18 84838664 to 84838688 24 + TSS region transcription start site region 152217
Tssr152218 18 84848943 to 84848950 7 + TSS region transcription start site region 152218
Cpgi10348 18 84851290 to 84851845 555 CpG island CpG island 10348
Tssr152219 18 84851331 to 84851348 17 + TSS region transcription start site region 152219
Cyb5a 18 84851342 to 84879863 28521 + protein coding gene cytochrome b5 type A (microsomal)
Tssr152220 18 84851352 to 84851376 24 + TSS region transcription start site region 152220
Tssr152221 18 84851378 to 84851400 22 + TSS region transcription start site region 152221
Tssr152222 18 84851407 to 84851429 22 + TSS region transcription start site region 152222
Tssr152223 18 84851758 to 84851807 49 + TSS region transcription start site region 152223
Gm16146 18 84858636 to 84859547 911 - antisense lncRNA gene predicted gene 16146
Tssr152224 18 84859423 to 84859434 11 + TSS region transcription start site region 152224
Tssr152225 18 84871563 to 84871576 13 + TSS region transcription start site region 152225
Tssr152226 18 84871929 to 84871934 5 + TSS region transcription start site region 152226
Tssr152227 18 84877814 to 84877833 19 + TSS region transcription start site region 152227
Tssr152228 18 84879590 to 84879606 16 + TSS region transcription start site region 152228
Tssr152229 18 84932882 to 84932886 4 + TSS region transcription start site region 152229
Tssr152230 18 84934542 to 84934556 14 + TSS region transcription start site region 152230
Tssr152231 18 84934594 to 84934617 23 + TSS region transcription start site region 152231
Tssr152232 18 84934625 to 84934634 9 + TSS region transcription start site region 152232
Tssr152233 18 84934646 to 84934651 5 + TSS region transcription start site region 152233
Tssr152234 18 84934653 to 84934665 12 + TSS region transcription start site region 152234
Fbxo15 18 84934782 to 84981472 46690 + protein coding gene F-box protein 15
Tssr152235 18 84935015 to 84935031 16 + TSS region transcription start site region 152235
Tssr152236 18 84936206 to 84936210 4 + TSS region transcription start site region 152236
Timm21 18 84947294 to 84951524 4230 - protein coding gene translocase of inner mitochondrial membrane 21
Tssr154150 18 84951428 to 84951442 14 - TSS region transcription start site region 154150
Tssr154151 18 84951451 to 84951462 11 - TSS region transcription start site region 154151
Cpgi10349 18 84951470 to 84952366 896 CpG island CpG island 10349
Tssr154152 18 84951477 to 84951536 59 - TSS region transcription start site region 154152
Tssr152237 18 84952085 to 84952128 43 + TSS region transcription start site region 152237
D18Dcr11 18 85013395 to 85013490 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 11
Tssr152238 18 85071746 to 85071765 19 + TSS region transcription start site region 152238
Tssr152239 18 85071767 to 85071774 7 + TSS region transcription start site region 152239
Tssr152240 18 85071833 to 85071859 26 + TSS region transcription start site region 152240
D18Dcr12 18 85359202 to 85359297 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 12
D18Mit144 18 85495842 to 85496018 176 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 144
Gm32291 18 85665083 to 85666808 1725 - lncRNA gene predicted gene, 32291
Tssr154153 18 85666791 to 85666824 33 - TSS region transcription start site region 154153
Tssr152241 18 85697927 to 85697935 8 + TSS region transcription start site region 152241
Tssr154154 18 85697953 to 85697976 23 - TSS region transcription start site region 154154
Cpgi10350 18 85698005 to 85698282 277 CpG island CpG island 10350
Tssr154155 18 85698030 to 85698062 32 - TSS region transcription start site region 154155
Tssr154156 18 85698107 to 85698138 31 - TSS region transcription start site region 154156
Tssr154157 18 85698180 to 85698187 7 - TSS region transcription start site region 154157
Tssr154158 18 85698213 to 85698215 2 - TSS region transcription start site region 154158
Gm7612 18 85715931 to 85717068 1137 - pseudogene predicted gene 7612
Cpgi10351 18 85716202 to 85716502 300 CpG island CpG island 10351
Gm5824 18 85847280 to 85848729 1449 - pseudogene predicted gene 5824