Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:82687857-83527869

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp236 18 82593593 to 82692883 99290 - protein coding gene zinc finger protein 236
Cpgi10321 18 82691593 to 82693369 1776 CpG island CpG island 10321
Gm10524 18 82692284 to 82694176 1892 + protein coding gene predicted gene 10524
Tssr152179 18 82692517 to 82692550 33 + TSS region transcription start site region 152179
Tssr152180 18 82692551 to 82692567 16 + TSS region transcription start site region 152180
Tssr152181 18 82692572 to 82692586 14 + TSS region transcription start site region 152181
Tssr152182 18 82692589 to 82692630 41 + TSS region transcription start site region 152182
Tssr5389 18 82692639 to 82692647 8 + TSS region transcription start site region 5389
Tssr154093 18 82692873 to 82692933 60 - TSS region transcription start site region 154093
Tssr152183 18 82692929 to 82692950 21 + TSS region transcription start site region 152183
Tssr152184 18 82692955 to 82692986 31 + TSS region transcription start site region 152184
Gm46620 18 82697314 to 82701315 4001 + protein coding gene predicted gene, 46620
Tssr5390 18 82705049 to 82705073 24 + TSS region transcription start site region 5390
Gm41793 18 82712854 to 82728751 15897 - protein coding gene predicted gene, 41793
Cpgi10322 18 82716655 to 82716862 207 CpG island CpG island 10322
Mir5112 18 82720281 to 82720340 59 + miRNA gene microRNA 5112
Cpgi10323 18 82729820 to 82730232 412 CpG island CpG island 10323
Cpgi10324 18 82751243 to 82751477 234 CpG island CpG island 10324
2210420H20Rik 18 82754505 to 82759039 4534 - lincRNA gene RIKEN cDNA 2210420H20 gene
Tssr154094 18 82759781 to 82759792 11 - TSS region transcription start site region 154094
Cpgi10325 18 82764222 to 82764589 367 CpG island CpG island 10325
Gm46638 18 82765264 to 82786849 21585 + lncRNA gene predicted gene, 46638
Tssr152185 18 82767286 to 82767319 33 + TSS region transcription start site region 152185
Tssr154095 18 82787601 to 82787614 13 - TSS region transcription start site region 154095
Tssr154096 18 82798762 to 82798788 26 - TSS region transcription start site region 154096
D18Mit43 18 82842877 to 82842999 122 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 43
Cpgi10326 18 82855420 to 82855854 434 CpG island CpG island 10326
Tssr152186 18 82855894 to 82855898 4 + TSS region transcription start site region 152186
4930445N18Rik 18 82855897 to 82859162 3265 + lincRNA gene RIKEN cDNA 4930445N18 gene
Gm30889 18 82902025 to 82905676 3651 + lncRNA gene predicted gene, 30889
Tssr152187 18 82902042 to 82902051 9 + TSS region transcription start site region 152187
Tssr152188 18 82902088 to 82902100 12 + TSS region transcription start site region 152188
D18Mit108 18 82905707 to 82905828 121 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 108
Cpgi10327 18 82909425 to 82911781 2356 CpG island CpG island 10327
Tssr152189 18 82910589 to 82910645 56 + TSS region transcription start site region 152189
Tssr152190 18 82910658 to 82910678 20 + TSS region transcription start site region 152190
Tssr152191 18 82910839 to 82910862 23 + TSS region transcription start site region 152191
Tssr152192 18 82910863 to 82910885 22 + TSS region transcription start site region 152192
Zfp516 18 82910879 to 83005314 94435 + protein coding gene zinc finger protein 516
Tssr152193 18 82910886 to 82910901 15 + TSS region transcription start site region 152193
Tssr152194 18 82910913 to 82910943 30 + TSS region transcription start site region 152194
Tssr152195 18 82911326 to 82911333 7 + TSS region transcription start site region 152195
Cpgi10328 18 82913154 to 82915235 2081 CpG island CpG island 10328
Tssr152196 18 82914638 to 82914664 26 + TSS region transcription start site region 152196
4930592I03Rik 18 82918405 to 82920560 2155 - lncRNA gene RIKEN cDNA 4930592I03 gene
Tssr154097 18 82920534 to 82920551 17 - TSS region transcription start site region 154097
Tssr152197 18 82972771 to 82972793 22 + TSS region transcription start site region 152197
Tssr5391 18 82997082 to 82997087 5 + TSS region transcription start site region 5391
Gm41795 18 83011180 to 83032019 20839 + lncRNA gene predicted gene, 41795
D18Mit1000 18 83037847 to 83037986 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 1000
Gm10523 18 83048054 to 83065006 16952 unclassified non-coding RNA gene predicted gene 10523
Gm46636 18 83052798 to 83098988 46190 + lncRNA gene predicted gene, 46636
Cpgi10329 18 83059877 to 83060245 368 CpG island CpG island 10329
Cpgi10330 18 83063400 to 83063571 171 CpG island CpG island 10330
1700095A13Rik 18 83106528 to 83107860 1332 - lincRNA gene RIKEN cDNA 1700095A13 gene
Tssr154098 18 83107857 to 83107869 12 - TSS region transcription start site region 154098
Tssr152198 18 83124715 to 83124722 7 + TSS region transcription start site region 152198
Cpgi10331 18 83134699 to 83134854 155 CpG island CpG island 10331
Gm41796 18 83179757 to 83180574 817 + lncRNA gene predicted gene, 41796
Gm31089 18 83218089 to 83272680 54591 + lncRNA gene predicted gene, 31089
Cpgi10332 18 83232300 to 83232451 151 CpG island CpG island 10332
Tssr154099 18 83238601 to 83238602 1 - TSS region transcription start site region 154099
Gm31206 18 83283492 to 83287786 4294 + lncRNA gene predicted gene, 31206
4921531P14Rik 18 83292792 to 83325884 33092 - lncRNA gene RIKEN cDNA 4921531P14 gene
Gm41797 18 83295153 to 83299815 4662 + lncRNA gene predicted gene, 41797
Cpgi10333 18 83325784 to 83326270 486 CpG island CpG island 10333
Tssr154100 18 83325863 to 83325886 23 - TSS region transcription start site region 154100
Gm24720 18 83355199 to 83355364 165 - snRNA gene predicted gene, 24720
Gm31265 18 83359011 to 83380930 21919 + lncRNA gene predicted gene, 31265
Tssr152199 18 83359018 to 83359033 15 + TSS region transcription start site region 152199
Gm31503 18 83361235 to 83373741 12506 - lncRNA gene predicted gene, 31503
D18Mit216 18 83415754 to 83415877 123 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 216
4933401L05Rik 18 83417653 to 83423478 5825 unclassified gene RIKEN cDNA 4933401L05 gene
Gm41798 18 83430583 to 83438979 8396 + lncRNA gene predicted gene, 41798
Gm31565 18 83482021 to 83484873 2852 - lncRNA gene predicted gene, 31565
Gm7569 18 83487854 to 83488835 981 - pseudogene predicted gene 7569
Tssr154101 18 83488831 to 83488836 5 - TSS region transcription start site region 154101
Tssr154102 18 83525291 to 83525305 14 - TSS region transcription start site region 154102