Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:81302708-82552709

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q16 18 61139376 to 81448616 20309240 QTL weight 3 weeks QTL 16
Gm30192 18 81264674 to 81330128 65454 + lncRNA gene predicted gene, 30192
D18Mit127 18 81306381 to 81306522 141 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 127
Tssr152127 18 81387698 to 81387699 1 + TSS region transcription start site region 152127
Gm30288 18 81434933 to 81457605 22672 - lncRNA gene predicted gene, 30288
D18Mit2 18 81448490 to 81448616 126 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 2
D18Mit3 18 81448513 to 81448616 103 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 3
Tssr154061 18 81566214 to 81566215 1 - TSS region transcription start site region 154061
Tssr154062 18 81589258 to 81589262 4 - TSS region transcription start site region 154062
Gm41792 18 81629242 to 81637651 8409 - lncRNA gene predicted gene, 41792
D18Mit5 18 81662572 to 81662760 188 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 5
Gm46614 18 81772077 to 81819086 47009 + lncRNA gene predicted gene, 46614
Gm30454 18 81844358 to 81849958 5600 - lncRNA gene predicted gene, 30454
Cpgi10315 18 81916181 to 81916707 526 CpG island CpG island 10315
Tssr154063 18 81924111 to 81924150 39 - TSS region transcription start site region 154063
Gm30513 18 81924531 to 81927638 3107 - lncRNA gene predicted gene, 30513
Tssr154064 18 81924747 to 81924760 13 - TSS region transcription start site region 154064
Tssr154065 18 81927206 to 81927241 35 - TSS region transcription start site region 154065
Cpgi10316 18 81927375 to 81927699 324 CpG island CpG island 10316
Tssr154066 18 81927420 to 81927431 11 - TSS region transcription start site region 154066
Tssr154067 18 81927475 to 81927484 9 - TSS region transcription start site region 154067
Tssr154068 18 81927637 to 81927640 3 - TSS region transcription start site region 154068
Tssr154069 18 81927644 to 81927662 18 - TSS region transcription start site region 154069
Tssr154070 18 81927669 to 81927672 3 - TSS region transcription start site region 154070
Tssr154071 18 81927687 to 81927696 9 - TSS region transcription start site region 154071
Tssr154072 18 81927708 to 81927709 1 - TSS region transcription start site region 154072
Gm30593 18 81933976 to 81960508 26532 + lncRNA gene predicted gene, 30593
Tssr152128 18 81939930 to 81939940 10 + TSS region transcription start site region 152128
Gm26012 18 81981069 to 81981196 127 + snoRNA gene predicted gene, 26012
Mir5127 18 81992010 to 81992080 70 - miRNA gene microRNA 5127
D18Mit44 18 82113893 to 82114037 144 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 44
D18Mit143 18 82320746 to 82320865 119 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 143
Tssr154073 18 82332344 to 82332353 9 - TSS region transcription start site region 154073
B020010K11Rik 18 82336249 to 82361599 25350 unclassified non-coding RNA gene RIKEN cDNA B020010K11 gene
Tssr152129 18 82338354 to 82338357 3 + TSS region transcription start site region 152129
Gm17383 18 82338774 to 82339816 1042 + pseudogene predicted gene, 17383
Gm25060 18 82355977 to 82356106 129 - snRNA gene predicted gene, 25060
4930520A20Rik 18 82386876 to 82387585 709 unclassified gene RIKEN cDNA 4930520A20 gene
Galr1 18 82392496 to 82406777 14281 - protein coding gene galanin receptor 1
Cpgi10318 18 82405499 to 82407524 2025 CpG island CpG island 10318
Gm30642 18 82407336 to 82410957 3621 + lncRNA gene predicted gene, 30642
D18Mit215 18 82413493 to 82413681 188 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 215
Cpgi10319 18 82474666 to 82476207 1541 CpG island CpG island 10319
Tssr152130 18 82475081 to 82475103 22 + TSS region transcription start site region 152130
Tssr152131 18 82475133 to 82475151 18 + TSS region transcription start site region 152131
Mbp 18 82475146 to 82585637 110491 + protein coding gene myelin basic protein
Tssr152132 18 82475157 to 82475170 13 + TSS region transcription start site region 152132
Tssr152133 18 82475180 to 82475196 16 + TSS region transcription start site region 152133
Tssr152134 18 82475205 to 82475232 27 + TSS region transcription start site region 152134
Tssr152135 18 82475235 to 82475255 20 + TSS region transcription start site region 152135
Tssr152136 18 82475302 to 82475309 7 + TSS region transcription start site region 152136
Tssr152137 18 82475998 to 82476054 56 + TSS region transcription start site region 152137
Tssr154074 18 82477108 to 82477117 9 - TSS region transcription start site region 154074
D18Mit101 18 82489050 to 82489192 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 101
D18Mit155 18 82491178 to 82491480 302 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 155
Rpl21-ps8 18 82523544 to 82524021 477 - pseudogene ribosomal protein L21, pseudogene 8
Tssr154075 18 82525858 to 82525895 37 - TSS region transcription start site region 154075
Tssr154076 18 82525928 to 82525960 32 - TSS region transcription start site region 154076
Tssr154077 18 82527740 to 82527750 10 - TSS region transcription start site region 154077
Tssr154078 18 82527768 to 82527773 5 - TSS region transcription start site region 154078
Tssr154079 18 82527786 to 82527791 5 - TSS region transcription start site region 154079
Tssr152138 18 82537124 to 82537135 11 + TSS region transcription start site region 152138
Tssr152139 18 82537605 to 82537617 12 + TSS region transcription start site region 152139
Tssr152140 18 82537649 to 82537705 56 + TSS region transcription start site region 152140
Tssr152141 18 82539700 to 82539703 3 + TSS region transcription start site region 152141
Tssr152142 18 82543949 to 82543952 3 + TSS region transcription start site region 152142