Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:80977698-81797699

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q16 18 61139376 to 81448616 20309240 QTL weight 3 weeks QTL 16
Sall3 18 80966376 to 80986578 20202 - protein coding gene spalt like transcription factor 3
Gm27238 18 80978913 to 80987869 8956 - sense overlapping lncRNA gene predicted gene 27238
Cpgi10312 18 80985281 to 80988432 3151 CpG island CpG island 10312
Tssr154059 18 80987016 to 80987022 6 - TSS region transcription start site region 154059
Tssr154060 18 80987384 to 80987416 32 - TSS region transcription start site region 154060
Gm27239 18 80987456 to 80988575 1119 + antisense lncRNA gene predicted gene 27239
Cpgi10313 18 80992219 to 80992461 242 CpG island CpG island 10313
Gm7503 18 80996778 to 80997509 731 - pseudogene predicted gene 7503
Gm25718 18 81026773 to 81026890 117 + snRNA gene predicted gene, 25718
Tssr5387 18 81087518 to 81087524 6 + TSS region transcription start site region 5387
Tssr5388 18 81117805 to 81117820 15 + TSS region transcription start site region 5388
Tssr152124 18 81117887 to 81117897 10 + TSS region transcription start site region 152124
Tssr152125 18 81130466 to 81130472 6 + TSS region transcription start site region 152125
Tssr152126 18 81200002 to 81200008 6 + TSS region transcription start site region 152126
Cpgi10314 18 81211009 to 81211181 172 CpG island CpG island 10314
4930594M17Rik 18 81226204 to 81236066 9862 - lincRNA gene RIKEN cDNA 4930594M17 gene
Gm30192 18 81264674 to 81330128 65454 + lncRNA gene predicted gene, 30192
D18Mit127 18 81306381 to 81306522 141 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 127
Tssr152127 18 81387698 to 81387699 1 + TSS region transcription start site region 152127
Gm30288 18 81434933 to 81457605 22672 - lncRNA gene predicted gene, 30288
D18Mit2 18 81448490 to 81448616 126 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 2
D18Mit3 18 81448513 to 81448616 103 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 3
Tssr154061 18 81566214 to 81566215 1 - TSS region transcription start site region 154061
Tssr154062 18 81589258 to 81589262 4 - TSS region transcription start site region 154062
Gm41792 18 81629242 to 81637651 8409 - lncRNA gene predicted gene, 41792
D18Mit5 18 81662572 to 81662760 188 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 5
Gm46614 18 81772077 to 81819086 47009 + lncRNA gene predicted gene, 46614