Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:80917572-82407760

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q16 18 61139376 to 81448616 20309240 QTL weight 3 weeks QTL 16
Atp9b 18 80734141 to 80934058 199917 - protein coding gene ATPase, class II, type 9B
Gm25071 18 80925736 to 80925805 69 - miRNA gene predicted gene, 25071
Cpgi10310 18 80933379 to 80934370 991 CpG island CpG island 10310
Tssr154056 18 80933973 to 80934045 72 - TSS region transcription start site region 154056
Tssr154057 18 80934054 to 80934077 23 - TSS region transcription start site region 154057
Sall3 18 80966376 to 80986578 20202 - protein coding gene spalt like transcription factor 3
Tssr154058 18 80968851 to 80968855 4 - TSS region transcription start site region 154058
Cpgi10311 18 80973854 to 80974704 850 CpG island CpG island 10311
Gm27238 18 80978913 to 80987869 8956 - sense overlapping lncRNA gene predicted gene 27238
Cpgi10312 18 80985281 to 80988432 3151 CpG island CpG island 10312
Tssr154059 18 80987016 to 80987022 6 - TSS region transcription start site region 154059
Tssr154060 18 80987384 to 80987416 32 - TSS region transcription start site region 154060
Gm27239 18 80987456 to 80988575 1119 + antisense lncRNA gene predicted gene 27239
Cpgi10313 18 80992219 to 80992461 242 CpG island CpG island 10313
Gm7503 18 80996778 to 80997509 731 - pseudogene predicted gene 7503
Gm25718 18 81026773 to 81026890 117 + snRNA gene predicted gene, 25718
Tssr5387 18 81087518 to 81087524 6 + TSS region transcription start site region 5387
Tssr5388 18 81117805 to 81117820 15 + TSS region transcription start site region 5388
Tssr152124 18 81117887 to 81117897 10 + TSS region transcription start site region 152124
Tssr152125 18 81130466 to 81130472 6 + TSS region transcription start site region 152125
Tssr152126 18 81200002 to 81200008 6 + TSS region transcription start site region 152126
Cpgi10314 18 81211009 to 81211181 172 CpG island CpG island 10314
4930594M17Rik 18 81226204 to 81236066 9862 - lincRNA gene RIKEN cDNA 4930594M17 gene
Gm30192 18 81264674 to 81330128 65454 + lncRNA gene predicted gene, 30192
D18Mit127 18 81306381 to 81306522 141 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 127
Tssr152127 18 81387698 to 81387699 1 + TSS region transcription start site region 152127
Gm30288 18 81434933 to 81457605 22672 - lncRNA gene predicted gene, 30288
D18Mit2 18 81448490 to 81448616 126 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 2
D18Mit3 18 81448513 to 81448616 103 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 3
Tssr154061 18 81566214 to 81566215 1 - TSS region transcription start site region 154061
Tssr154062 18 81589258 to 81589262 4 - TSS region transcription start site region 154062
Gm41792 18 81629242 to 81637651 8409 - lncRNA gene predicted gene, 41792
D18Mit5 18 81662572 to 81662760 188 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 5
Gm46614 18 81772077 to 81819086 47009 + lncRNA gene predicted gene, 46614
Gm30454 18 81844358 to 81849958 5600 - lncRNA gene predicted gene, 30454
Cpgi10315 18 81916181 to 81916707 526 CpG island CpG island 10315
Tssr154063 18 81924111 to 81924150 39 - TSS region transcription start site region 154063
Gm30513 18 81924531 to 81927638 3107 - lncRNA gene predicted gene, 30513
Tssr154064 18 81924747 to 81924760 13 - TSS region transcription start site region 154064
Tssr154065 18 81927206 to 81927241 35 - TSS region transcription start site region 154065
Cpgi10316 18 81927375 to 81927699 324 CpG island CpG island 10316
Tssr154066 18 81927420 to 81927431 11 - TSS region transcription start site region 154066
Tssr154067 18 81927475 to 81927484 9 - TSS region transcription start site region 154067
Tssr154068 18 81927637 to 81927640 3 - TSS region transcription start site region 154068
Tssr154069 18 81927644 to 81927662 18 - TSS region transcription start site region 154069
Tssr154070 18 81927669 to 81927672 3 - TSS region transcription start site region 154070
Tssr154071 18 81927687 to 81927696 9 - TSS region transcription start site region 154071
Tssr154072 18 81927708 to 81927709 1 - TSS region transcription start site region 154072
Gm30593 18 81933976 to 81960508 26532 + lncRNA gene predicted gene, 30593
Tssr152128 18 81939930 to 81939940 10 + TSS region transcription start site region 152128
Gm26012 18 81981069 to 81981196 127 + snoRNA gene predicted gene, 26012
Mir5127 18 81992010 to 81992080 70 - miRNA gene microRNA 5127
D18Mit44 18 82113893 to 82114037 144 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 44
D18Mit143 18 82320746 to 82320865 119 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 143
Tssr154073 18 82332344 to 82332353 9 - TSS region transcription start site region 154073
B020010K11Rik 18 82336249 to 82361599 25350 unclassified non-coding RNA gene RIKEN cDNA B020010K11 gene
Tssr152129 18 82338354 to 82338357 3 + TSS region transcription start site region 152129
Gm17383 18 82338774 to 82339816 1042 + pseudogene predicted gene, 17383
Gm25060 18 82355977 to 82356106 129 - snRNA gene predicted gene, 25060
4930520A20Rik 18 82386876 to 82387585 709 unclassified gene RIKEN cDNA 4930520A20 gene
Galr1 18 82392496 to 82406777 14281 - protein coding gene galanin receptor 1
Cpgi10318 18 82405499 to 82407524 2025 CpG island CpG island 10318
Gm30642 18 82407336 to 82410957 3621 + lncRNA gene predicted gene, 30642