Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:80864933-82027605

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q16 18 61139376 to 81448616 20309240 QTL weight 3 weeks QTL 16
Atp9b 18 80734141 to 80934058 199917 - protein coding gene ATPase, class II, type 9B
Tssr154054 18 80869685 to 80869689 4 - TSS region transcription start site region 154054
Tssr154055 18 80901405 to 80901409 4 - TSS region transcription start site region 154055
Gm25071 18 80925736 to 80925805 69 - miRNA gene predicted gene, 25071
Cpgi10310 18 80933379 to 80934370 991 CpG island CpG island 10310
Tssr154056 18 80933973 to 80934045 72 - TSS region transcription start site region 154056
Tssr154057 18 80934054 to 80934077 23 - TSS region transcription start site region 154057
Sall3 18 80966376 to 80986578 20202 - protein coding gene spalt like transcription factor 3
Tssr154058 18 80968851 to 80968855 4 - TSS region transcription start site region 154058
Cpgi10311 18 80973854 to 80974704 850 CpG island CpG island 10311
Gm27238 18 80978913 to 80987869 8956 - sense overlapping lncRNA gene predicted gene 27238
Cpgi10312 18 80985281 to 80988432 3151 CpG island CpG island 10312
Tssr154059 18 80987016 to 80987022 6 - TSS region transcription start site region 154059
Tssr154060 18 80987384 to 80987416 32 - TSS region transcription start site region 154060
Gm27239 18 80987456 to 80988575 1119 + antisense lncRNA gene predicted gene 27239
Cpgi10313 18 80992219 to 80992461 242 CpG island CpG island 10313
Gm7503 18 80996778 to 80997509 731 - pseudogene predicted gene 7503
Gm25718 18 81026773 to 81026890 117 + snRNA gene predicted gene, 25718
Tssr5387 18 81087518 to 81087524 6 + TSS region transcription start site region 5387
Tssr5388 18 81117805 to 81117820 15 + TSS region transcription start site region 5388
Tssr152124 18 81117887 to 81117897 10 + TSS region transcription start site region 152124
Tssr152125 18 81130466 to 81130472 6 + TSS region transcription start site region 152125
Tssr152126 18 81200002 to 81200008 6 + TSS region transcription start site region 152126
Cpgi10314 18 81211009 to 81211181 172 CpG island CpG island 10314
4930594M17Rik 18 81226204 to 81236066 9862 - lincRNA gene RIKEN cDNA 4930594M17 gene
Gm30192 18 81264674 to 81330128 65454 + lncRNA gene predicted gene, 30192
D18Mit127 18 81306381 to 81306522 141 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 127
Tssr152127 18 81387698 to 81387699 1 + TSS region transcription start site region 152127
Gm30288 18 81434933 to 81457605 22672 - lncRNA gene predicted gene, 30288
D18Mit2 18 81448490 to 81448616 126 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 2
D18Mit3 18 81448513 to 81448616 103 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 3
Tssr154061 18 81566214 to 81566215 1 - TSS region transcription start site region 154061
Tssr154062 18 81589258 to 81589262 4 - TSS region transcription start site region 154062
Gm41792 18 81629242 to 81637651 8409 - lncRNA gene predicted gene, 41792
D18Mit5 18 81662572 to 81662760 188 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 5
Gm46614 18 81772077 to 81819086 47009 + lncRNA gene predicted gene, 46614
Gm30454 18 81844358 to 81849958 5600 - lncRNA gene predicted gene, 30454
Cpgi10315 18 81916181 to 81916707 526 CpG island CpG island 10315
Tssr154063 18 81924111 to 81924150 39 - TSS region transcription start site region 154063
Gm30513 18 81924531 to 81927638 3107 - lncRNA gene predicted gene, 30513
Tssr154064 18 81924747 to 81924760 13 - TSS region transcription start site region 154064
Tssr154065 18 81927206 to 81927241 35 - TSS region transcription start site region 154065
Cpgi10316 18 81927375 to 81927699 324 CpG island CpG island 10316
Tssr154066 18 81927420 to 81927431 11 - TSS region transcription start site region 154066
Tssr154067 18 81927475 to 81927484 9 - TSS region transcription start site region 154067
Tssr154068 18 81927637 to 81927640 3 - TSS region transcription start site region 154068
Tssr154069 18 81927644 to 81927662 18 - TSS region transcription start site region 154069
Tssr154070 18 81927669 to 81927672 3 - TSS region transcription start site region 154070
Tssr154071 18 81927687 to 81927696 9 - TSS region transcription start site region 154071
Tssr154072 18 81927708 to 81927709 1 - TSS region transcription start site region 154072
Gm30593 18 81933976 to 81960508 26532 + lncRNA gene predicted gene, 30593
Tssr152128 18 81939930 to 81939940 10 + TSS region transcription start site region 152128
Gm26012 18 81981069 to 81981196 127 + snoRNA gene predicted gene, 26012
Mir5127 18 81992010 to 81992080 70 - miRNA gene microRNA 5127