Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:80827805-81407820

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp9b 18 80734141 to 80934058 199917 - protein coding gene ATPase, class II, type 9B
Gm47272 18 80822247 to 80838491 16244 + antisense lncRNA gene predicted gene, 47272
Gm47273 18 80854309 to 80854727 418 + pseudogene predicted gene, 47273
Tssr154051 18 80860914 to 80860922 8 - TSS region transcription start site region 154051
Tssr154052 18 80860936 to 80860952 16 - TSS region transcription start site region 154052
Tssr154053 18 80860954 to 80860963 9 - TSS region transcription start site region 154053
Tssr154054 18 80869685 to 80869689 4 - TSS region transcription start site region 154054
Tssr154055 18 80901405 to 80901409 4 - TSS region transcription start site region 154055
Gm25071 18 80925736 to 80925805 69 - miRNA gene predicted gene, 25071
Cpgi10310 18 80933379 to 80934370 991 CpG island CpG island 10310
Tssr154056 18 80933973 to 80934045 72 - TSS region transcription start site region 154056
Tssr154057 18 80934054 to 80934077 23 - TSS region transcription start site region 154057
Sall3 18 80966376 to 80986578 20202 - protein coding gene spalt like transcription factor 3
Tssr154058 18 80968851 to 80968855 4 - TSS region transcription start site region 154058
Cpgi10311 18 80973854 to 80974704 850 CpG island CpG island 10311
Gm27238 18 80978913 to 80987869 8956 - sense overlapping lncRNA gene predicted gene 27238
Cpgi10312 18 80985281 to 80988432 3151 CpG island CpG island 10312
Tssr154059 18 80987016 to 80987022 6 - TSS region transcription start site region 154059
Tssr154060 18 80987384 to 80987416 32 - TSS region transcription start site region 154060
Gm27239 18 80987456 to 80988575 1119 + antisense lncRNA gene predicted gene 27239
Cpgi10313 18 80992219 to 80992461 242 CpG island CpG island 10313
Gm7503 18 80996778 to 80997509 731 - pseudogene predicted gene 7503
Gm25718 18 81026773 to 81026890 117 + snRNA gene predicted gene, 25718
Tssr5387 18 81087518 to 81087524 6 + TSS region transcription start site region 5387
Tssr5388 18 81117805 to 81117820 15 + TSS region transcription start site region 5388
Tssr152124 18 81117887 to 81117897 10 + TSS region transcription start site region 152124
Tssr152125 18 81130466 to 81130472 6 + TSS region transcription start site region 152125
Tssr152126 18 81200002 to 81200008 6 + TSS region transcription start site region 152126
Cpgi10314 18 81211009 to 81211181 172 CpG island CpG island 10314
4930594M17Rik 18 81226204 to 81236066 9862 - lincRNA gene RIKEN cDNA 4930594M17 gene
Gm30192 18 81264674 to 81330128 65454 + lncRNA gene predicted gene, 30192
D18Mit127 18 81306381 to 81306522 141 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 127
Tssr152127 18 81387698 to 81387699 1 + TSS region transcription start site region 152127