Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:80401892-80684546

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctdp1 18 80407959 to 80469695 61736 - protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
Tssr154024 18 80440806 to 80440835 29 - TSS region transcription start site region 154024
Tssr154025 18 80440850 to 80440865 15 - TSS region transcription start site region 154025
Tssr154026 18 80451248 to 80451259 11 - TSS region transcription start site region 154026
Tssr152107 18 80468178 to 80468207 29 + TSS region transcription start site region 152107
Tssr152108 18 80468878 to 80468923 45 + TSS region transcription start site region 152108
Cpgi10303 18 80468949 to 80470547 1598 CpG island CpG island 10303
Tssr154027 18 80469640 to 80469649 9 - TSS region transcription start site region 154027
Tssr154028 18 80469658 to 80469662 4 - TSS region transcription start site region 154028
Tssr154029 18 80469664 to 80469719 55 - TSS region transcription start site region 154029
Gm9456 18 80469736 to 80470664 928 unclassified gene predicted gene 9456
Tssr152109 18 80470118 to 80470134 16 + TSS region transcription start site region 152109
Tssr152110 18 80470158 to 80470171 13 + TSS region transcription start site region 152110
Gm30020 18 80500125 to 80528162 28037 - lncRNA gene predicted gene, 30020
Tssr154030 18 80502496 to 80502499 3 - TSS region transcription start site region 154030
Gm41788 18 80528234 to 80530719 2485 + lncRNA gene predicted gene, 41788
D18Mit212 18 80539932 to 80540055 123 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 212
Gm2176 18 80541892 to 80544546 2654 - pseudogene predicted gene 2176
Tssr154031 18 80554780 to 80554797 17 - TSS region transcription start site region 154031
Cpgi10304 18 80554893 to 80555107 214 CpG island CpG island 10304
Tssr152111 18 80555190 to 80555193 3 + TSS region transcription start site region 152111
Tssr152112 18 80555227 to 80555233 6 + TSS region transcription start site region 152112
Gm41790 18 80571824 to 80605936 34112 - lncRNA gene predicted gene, 41790
Tssr154032 18 80597552 to 80597560 8 - TSS region transcription start site region 154032
Tssr154033 18 80597561 to 80597574 13 - TSS region transcription start site region 154033
Nfatc1 18 80606205 to 80713071 106866 - protein coding gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1
Tssr154034 18 80608459 to 80608478 19 - TSS region transcription start site region 154034
Cpgi10305 18 80608547 to 80608701 154 CpG island CpG island 10305
Tssr152113 18 80608622 to 80608628 6 + TSS region transcription start site region 152113
Tssr154035 18 80609711 to 80609723 12 - TSS region transcription start site region 154035
Tssr152114 18 80609815 to 80609835 20 + TSS region transcription start site region 152114
Tssr154036 18 80611193 to 80611221 28 - TSS region transcription start site region 154036
Tssr154037 18 80611709 to 80611715 6 - TSS region transcription start site region 154037
Tssr152115 18 80612484 to 80612497 13 + TSS region transcription start site region 152115
1700017H01Rik 18 80629446 to 80630798 1352 unclassified gene RIKEN cDNA 1700017H01 gene
Tssr154038 18 80673856 to 80673860 4 - TSS region transcription start site region 154038
Tssr152116 18 80678784 to 80678788 4 + TSS region transcription start site region 152116