Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:80223084-81193091

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Txnl4a 18 80206795 to 80223533 16738 + protein coding gene thioredoxin-like 4A
Hsbp1l1 18 80229758 to 80247102 17344 - protein coding gene heat shock factor binding protein 1-like 1
Cpgi10297 18 80236216 to 80236978 762 CpG island CpG island 10297
Tssr154008 18 80236345 to 80236354 9 - TSS region transcription start site region 154008
Tssr154009 18 80236673 to 80236679 6 - TSS region transcription start site region 154009
Tssr154010 18 80236682 to 80236708 26 - TSS region transcription start site region 154010
Tssr154011 18 80236792 to 80236811 19 - TSS region transcription start site region 154011
Tssr154012 18 80236816 to 80236843 27 - TSS region transcription start site region 154012
Tssr154013 18 80236869 to 80236888 19 - TSS region transcription start site region 154013
Tssr152096 18 80253274 to 80253286 12 + TSS region transcription start site region 152096
Tssr5385 18 80253293 to 80253305 12 + TSS region transcription start site region 5385
Tssr152097 18 80255227 to 80255278 51 + TSS region transcription start site region 152097
Pqlc1 18 80255245 to 80292724 37479 + protein coding gene PQ loop repeat containing 1
Tssr152098 18 80255283 to 80255300 17 + TSS region transcription start site region 152098
Tssr152099 18 80255344 to 80255374 30 + TSS region transcription start site region 152099
Cpgi10298 18 80255741 to 80257098 1357 CpG island CpG island 10298
Tssr154014 18 80256025 to 80256041 16 - TSS region transcription start site region 154014
Tssr152100 18 80256249 to 80256297 48 + TSS region transcription start site region 152100
Tssr152101 18 80256300 to 80256326 26 + TSS region transcription start site region 152101
Tssr152102 18 80256335 to 80256347 12 + TSS region transcription start site region 152102
Tssr154015 18 80257438 to 80257447 9 - TSS region transcription start site region 154015
Tssr152103 18 80264442 to 80264469 27 + TSS region transcription start site region 152103
Tssr152104 18 80278984 to 80279005 21 + TSS region transcription start site region 152104
Tssr152105 18 80279438 to 80279443 5 + TSS region transcription start site region 152105
Kcng2 18 80294546 to 80364254 69708 - protein coding gene potassium voltage-gated channel, subfamily G, member 2
Cpgi10299 18 80295492 to 80296574 1082 CpG island CpG island 10299
Gm37015 18 80302160 to 80303680 1520 - unclassified gene predicted gene, 37015
Tssr154016 18 80312979 to 80312984 5 - TSS region transcription start site region 154016
Gm29913 18 80316704 to 80320916 4212 + lncRNA gene predicted gene, 29913
Cpgi10300 18 80322197 to 80323373 1176 CpG island CpG island 10300
Gm26676 18 80323335 to 80326605 3270 + antisense lncRNA gene predicted gene, 26676
Cpgi10301 18 80337705 to 80337976 271 CpG island CpG island 10301
Tssr154017 18 80340981 to 80340984 3 - TSS region transcription start site region 154017
Tssr154018 18 80345736 to 80345745 9 - TSS region transcription start site region 154018
Tssr154019 18 80345845 to 80345880 35 - TSS region transcription start site region 154019
Tssr154020 18 80346069 to 80346089 20 - TSS region transcription start site region 154020
Tssr154021 18 80353763 to 80353767 4 - TSS region transcription start site region 154021
Cpgi10302 18 80362662 to 80364183 1521 CpG island CpG island 10302
Tssr152106 18 80362777 to 80362782 5 + TSS region transcription start site region 152106
D330025C20Rik 18 80362787 to 80365191 2404 + unclassified non-coding RNA gene RIKEN cDNA D330025C20 gene
Tssr154022 18 80363622 to 80363667 45 - TSS region transcription start site region 154022
Tssr154023 18 80363670 to 80363675 5 - TSS region transcription start site region 154023
Gm29967 18 80376437 to 80393421 16984 - lncRNA gene predicted gene, 29967
Ctdp1 18 80407959 to 80469695 61736 - protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
Tssr154024 18 80440806 to 80440835 29 - TSS region transcription start site region 154024
Tssr154025 18 80440850 to 80440865 15 - TSS region transcription start site region 154025
Tssr154026 18 80451248 to 80451259 11 - TSS region transcription start site region 154026
Tssr152107 18 80468178 to 80468207 29 + TSS region transcription start site region 152107
Tssr152108 18 80468878 to 80468923 45 + TSS region transcription start site region 152108
Cpgi10303 18 80468949 to 80470547 1598 CpG island CpG island 10303
Tssr154027 18 80469640 to 80469649 9 - TSS region transcription start site region 154027
Tssr154028 18 80469658 to 80469662 4 - TSS region transcription start site region 154028
Tssr154029 18 80469664 to 80469719 55 - TSS region transcription start site region 154029
Gm9456 18 80469736 to 80470664 928 unclassified gene predicted gene 9456
Tssr152109 18 80470118 to 80470134 16 + TSS region transcription start site region 152109
Tssr152110 18 80470158 to 80470171 13 + TSS region transcription start site region 152110
Gm30020 18 80500125 to 80528162 28037 - lncRNA gene predicted gene, 30020
Tssr154030 18 80502496 to 80502499 3 - TSS region transcription start site region 154030
Gm41788 18 80528234 to 80530719 2485 + lncRNA gene predicted gene, 41788
D18Mit212 18 80539932 to 80540055 123 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 212
Gm2176 18 80541892 to 80544546 2654 - pseudogene predicted gene 2176
Tssr154031 18 80554780 to 80554797 17 - TSS region transcription start site region 154031
Cpgi10304 18 80554893 to 80555107 214 CpG island CpG island 10304
Tssr152111 18 80555190 to 80555193 3 + TSS region transcription start site region 152111
Tssr152112 18 80555227 to 80555233 6 + TSS region transcription start site region 152112
Gm41790 18 80571824 to 80605936 34112 - lncRNA gene predicted gene, 41790
Tssr154032 18 80597552 to 80597560 8 - TSS region transcription start site region 154032
Tssr154033 18 80597561 to 80597574 13 - TSS region transcription start site region 154033
Nfatc1 18 80606205 to 80713071 106866 - protein coding gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1
Tssr154034 18 80608459 to 80608478 19 - TSS region transcription start site region 154034
Cpgi10305 18 80608547 to 80608701 154 CpG island CpG island 10305
Tssr152113 18 80608622 to 80608628 6 + TSS region transcription start site region 152113
Tssr154035 18 80609711 to 80609723 12 - TSS region transcription start site region 154035
Tssr152114 18 80609815 to 80609835 20 + TSS region transcription start site region 152114
Tssr154036 18 80611193 to 80611221 28 - TSS region transcription start site region 154036
Tssr154037 18 80611709 to 80611715 6 - TSS region transcription start site region 154037
Tssr152115 18 80612484 to 80612497 13 + TSS region transcription start site region 152115
1700017H01Rik 18 80629446 to 80630798 1352 unclassified gene RIKEN cDNA 1700017H01 gene
Tssr154038 18 80673856 to 80673860 4 - TSS region transcription start site region 154038
Tssr152116 18 80678784 to 80678788 4 + TSS region transcription start site region 152116
Cpgi10306 18 80690026 to 80690261 235 CpG island CpG island 10306
Tssr154039 18 80698172 to 80698190 18 - TSS region transcription start site region 154039
Tssr154040 18 80698390 to 80698402 12 - TSS region transcription start site region 154040
Tssr152117 18 80705024 to 80705029 5 + TSS region transcription start site region 152117
Tssr152118 18 80707227 to 80707239 12 + TSS region transcription start site region 152118
Tssr152119 18 80707262 to 80707269 7 + TSS region transcription start site region 152119
Tssr152120 18 80707272 to 80707286 14 + TSS region transcription start site region 152120
Cpgi10307 18 80707323 to 80708742 1419 CpG island CpG island 10307
Tssr154041 18 80708084 to 80708091 7 - TSS region transcription start site region 154041
Tssr154042 18 80708115 to 80708180 65 - TSS region transcription start site region 154042
Tssr154043 18 80708184 to 80708194 10 - TSS region transcription start site region 154043
Tssr152121 18 80708288 to 80708301 13 + TSS region transcription start site region 152121
Cpgi10308 18 80712085 to 80713978 1893 CpG island CpG island 10308
Tssr154044 18 80713062 to 80713080 18 - TSS region transcription start site region 154044
Tssr154045 18 80713571 to 80713590 19 - TSS region transcription start site region 154045
Cpgi10309 18 80714256 to 80715671 1415 CpG island CpG island 10309
Tssr152122 18 80715074 to 80715088 14 + TSS region transcription start site region 152122
Tssr152123 18 80715371 to 80715382 11 + TSS region transcription start site region 152123
Atp9b 18 80734141 to 80934058 199917 - protein coding gene ATPase, class II, type 9B
Tssr154046 18 80738301 to 80738311 10 - TSS region transcription start site region 154046
Tssr154047 18 80743000 to 80743008 8 - TSS region transcription start site region 154047
Tssr154048 18 80743010 to 80743026 16 - TSS region transcription start site region 154048
Tssr154049 18 80743033 to 80743040 7 - TSS region transcription start site region 154049
Tssr154050 18 80743049 to 80743061 12 - TSS region transcription start site region 154050
Tssr5386 18 80791048 to 80791049 1 + TSS region transcription start site region 5386
Gm47272 18 80822247 to 80838491 16244 + antisense lncRNA gene predicted gene, 47272
Gm47273 18 80854309 to 80854727 418 + pseudogene predicted gene, 47273
Tssr154051 18 80860914 to 80860922 8 - TSS region transcription start site region 154051
Tssr154052 18 80860936 to 80860952 16 - TSS region transcription start site region 154052
Tssr154053 18 80860954 to 80860963 9 - TSS region transcription start site region 154053
Tssr154054 18 80869685 to 80869689 4 - TSS region transcription start site region 154054
Tssr154055 18 80901405 to 80901409 4 - TSS region transcription start site region 154055
Gm25071 18 80925736 to 80925805 69 - miRNA gene predicted gene, 25071
Cpgi10310 18 80933379 to 80934370 991 CpG island CpG island 10310
Tssr154056 18 80933973 to 80934045 72 - TSS region transcription start site region 154056
Tssr154057 18 80934054 to 80934077 23 - TSS region transcription start site region 154057
Sall3 18 80966376 to 80986578 20202 - protein coding gene spalt like transcription factor 3
Tssr154058 18 80968851 to 80968855 4 - TSS region transcription start site region 154058
Cpgi10311 18 80973854 to 80974704 850 CpG island CpG island 10311
Gm27238 18 80978913 to 80987869 8956 - sense overlapping lncRNA gene predicted gene 27238
Cpgi10312 18 80985281 to 80988432 3151 CpG island CpG island 10312
Tssr154059 18 80987016 to 80987022 6 - TSS region transcription start site region 154059
Tssr154060 18 80987384 to 80987416 32 - TSS region transcription start site region 154060
Gm27239 18 80987456 to 80988575 1119 + antisense lncRNA gene predicted gene 27239
Cpgi10313 18 80992219 to 80992461 242 CpG island CpG island 10313
Gm7503 18 80996778 to 80997509 731 - pseudogene predicted gene 7503
Gm25718 18 81026773 to 81026890 117 + snRNA gene predicted gene, 25718
Tssr5387 18 81087518 to 81087524 6 + TSS region transcription start site region 5387
Tssr5388 18 81117805 to 81117820 15 + TSS region transcription start site region 5388
Tssr152124 18 81117887 to 81117897 10 + TSS region transcription start site region 152124
Tssr152125 18 81130466 to 81130472 6 + TSS region transcription start site region 152125