Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:80178622-80548667

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D18Dcr10 18 80184385 to 80184483 98 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 10
Tssr152091 18 80186222 to 80186231 9 + TSS region transcription start site region 152091
Tssr152092 18 80186233 to 80186245 12 + TSS region transcription start site region 152092
Rbfaos 18 80186239 to 80193569 7330 + lncRNA gene ribosome binding factor A, opposite strand
Gm46629 18 80188521 to 80192159 3638 - pseudogene predicted gene, 46629
Rbfa 18 80192264 to 80200619 8355 - protein coding gene ribosome binding factor A
Tssr154005 18 80198476 to 80198488 12 - TSS region transcription start site region 154005
Cpgi10295 18 80200245 to 80200916 671 CpG island CpG island 10295
Tssr154006 18 80200576 to 80200583 7 - TSS region transcription start site region 154006
Tssr154007 18 80200597 to 80200669 72 - TSS region transcription start site region 154007
Cpgi10296 18 80206511 to 80207475 964 CpG island CpG island 10296
Gm16286 18 80206765 to 80212741 5976 + protein coding gene predicted gene 16286
Tssr152093 18 80206775 to 80206881 106 + TSS region transcription start site region 152093
Txnl4a 18 80206795 to 80223533 16738 + protein coding gene thioredoxin-like 4A
Tssr152094 18 80206887 to 80206900 13 + TSS region transcription start site region 152094
Tssr152095 18 80207171 to 80207218 47 + TSS region transcription start site region 152095
Hsbp1l1 18 80229758 to 80247102 17344 - protein coding gene heat shock factor binding protein 1-like 1
Cpgi10297 18 80236216 to 80236978 762 CpG island CpG island 10297
Tssr154008 18 80236345 to 80236354 9 - TSS region transcription start site region 154008
Tssr154009 18 80236673 to 80236679 6 - TSS region transcription start site region 154009
Tssr154010 18 80236682 to 80236708 26 - TSS region transcription start site region 154010
Tssr154011 18 80236792 to 80236811 19 - TSS region transcription start site region 154011
Tssr154012 18 80236816 to 80236843 27 - TSS region transcription start site region 154012
Tssr154013 18 80236869 to 80236888 19 - TSS region transcription start site region 154013
Tssr152096 18 80253274 to 80253286 12 + TSS region transcription start site region 152096
Tssr5385 18 80253293 to 80253305 12 + TSS region transcription start site region 5385
Tssr152097 18 80255227 to 80255278 51 + TSS region transcription start site region 152097
Pqlc1 18 80255245 to 80292724 37479 + protein coding gene PQ loop repeat containing 1
Tssr152098 18 80255283 to 80255300 17 + TSS region transcription start site region 152098
Tssr152099 18 80255344 to 80255374 30 + TSS region transcription start site region 152099
Cpgi10298 18 80255741 to 80257098 1357 CpG island CpG island 10298
Tssr154014 18 80256025 to 80256041 16 - TSS region transcription start site region 154014
Tssr152100 18 80256249 to 80256297 48 + TSS region transcription start site region 152100
Tssr152101 18 80256300 to 80256326 26 + TSS region transcription start site region 152101
Tssr152102 18 80256335 to 80256347 12 + TSS region transcription start site region 152102
Tssr154015 18 80257438 to 80257447 9 - TSS region transcription start site region 154015
Tssr152103 18 80264442 to 80264469 27 + TSS region transcription start site region 152103
Tssr152104 18 80278984 to 80279005 21 + TSS region transcription start site region 152104
Tssr152105 18 80279438 to 80279443 5 + TSS region transcription start site region 152105
Kcng2 18 80294546 to 80364254 69708 - protein coding gene potassium voltage-gated channel, subfamily G, member 2
Cpgi10299 18 80295492 to 80296574 1082 CpG island CpG island 10299
Gm37015 18 80302160 to 80303680 1520 - unclassified gene predicted gene, 37015
Tssr154016 18 80312979 to 80312984 5 - TSS region transcription start site region 154016
Gm29913 18 80316704 to 80320916 4212 + lncRNA gene predicted gene, 29913
Cpgi10300 18 80322197 to 80323373 1176 CpG island CpG island 10300
Gm26676 18 80323335 to 80326605 3270 + antisense lncRNA gene predicted gene, 26676
Cpgi10301 18 80337705 to 80337976 271 CpG island CpG island 10301
Tssr154017 18 80340981 to 80340984 3 - TSS region transcription start site region 154017
Tssr154018 18 80345736 to 80345745 9 - TSS region transcription start site region 154018
Tssr154019 18 80345845 to 80345880 35 - TSS region transcription start site region 154019
Tssr154020 18 80346069 to 80346089 20 - TSS region transcription start site region 154020
Tssr154021 18 80353763 to 80353767 4 - TSS region transcription start site region 154021
Cpgi10302 18 80362662 to 80364183 1521 CpG island CpG island 10302
Tssr152106 18 80362777 to 80362782 5 + TSS region transcription start site region 152106
D330025C20Rik 18 80362787 to 80365191 2404 + unclassified non-coding RNA gene RIKEN cDNA D330025C20 gene
Tssr154022 18 80363622 to 80363667 45 - TSS region transcription start site region 154022
Tssr154023 18 80363670 to 80363675 5 - TSS region transcription start site region 154023
Gm29967 18 80376437 to 80393421 16984 - lncRNA gene predicted gene, 29967
Ctdp1 18 80407959 to 80469695 61736 - protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
Tssr154024 18 80440806 to 80440835 29 - TSS region transcription start site region 154024
Tssr154025 18 80440850 to 80440865 15 - TSS region transcription start site region 154025
Tssr154026 18 80451248 to 80451259 11 - TSS region transcription start site region 154026
Tssr152107 18 80468178 to 80468207 29 + TSS region transcription start site region 152107
Tssr152108 18 80468878 to 80468923 45 + TSS region transcription start site region 152108
Cpgi10303 18 80468949 to 80470547 1598 CpG island CpG island 10303
Tssr154027 18 80469640 to 80469649 9 - TSS region transcription start site region 154027
Tssr154028 18 80469658 to 80469662 4 - TSS region transcription start site region 154028
Tssr154029 18 80469664 to 80469719 55 - TSS region transcription start site region 154029
Gm9456 18 80469736 to 80470664 928 unclassified gene predicted gene 9456
Tssr152109 18 80470118 to 80470134 16 + TSS region transcription start site region 152109
Tssr152110 18 80470158 to 80470171 13 + TSS region transcription start site region 152110
Gm30020 18 80500125 to 80528162 28037 - lncRNA gene predicted gene, 30020
Tssr154030 18 80502496 to 80502499 3 - TSS region transcription start site region 154030
Gm41788 18 80528234 to 80530719 2485 + lncRNA gene predicted gene, 41788
D18Mit212 18 80539932 to 80540055 123 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 212
Gm2176 18 80541892 to 80544546 2654 - pseudogene predicted gene 2176