Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:79911890-80254639

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5509 18 79934332 to 79935561 1229 + pseudogene predicted gene 5509
Gm18910 18 79936031 to 79936953 922 + pseudogene predicted gene, 18910
Tssr152087 18 79958943 to 79958955 12 + TSS region transcription start site region 152087
Gm5823 18 79958991 to 79959707 716 + pseudogene predicted gene 5823
AA684185 18 80012563 to 80012951 388 + unclassified gene expressed sequence AA684185
Gm36627 18 80016285 to 80016530 245 + pseudogene predicted gene, 36627
Gm36718 18 80019299 to 80020297 998 + protein coding gene predicted gene, 36718
Gm6172 18 80020201 to 80030222 10021 + pseudogene predicted gene 6172
Cpgi10290 18 80040437 to 80040614 177 CpG island CpG island 10290
Cpgi10291 18 80046552 to 80048091 1539 CpG island CpG island 10291
Tssr152088 18 80046854 to 80046904 50 + TSS region transcription start site region 152088
Pard6g 18 80046895 to 80119640 72745 + protein coding gene par-6 family cell polarity regulator gamma
Tssr152089 18 80046906 to 80046963 57 + TSS region transcription start site region 152089
Cpgi10292 18 80071611 to 80071777 166 CpG island CpG island 10292
Gm21886 18 80089297 to 80089962 665 - protein coding gene predicted gene, 21886
Tssr154001 18 80124565 to 80124595 30 - TSS region transcription start site region 154001
Adnp2 18 80126311 to 80151482 25171 - protein coding gene ADNP homeobox 2
D18Mit129 18 80132049 to 80132186 137 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 129
Sicd1 18 80132049 to 89572790 9440741 QTL seizure-induced cell death 1
D18Dcr9 18 80134389 to 80134484 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 9
Cpgi10293 18 80150657 to 80151905 1248 CpG island CpG island 10293
Tssr154002 18 80151412 to 80151442 30 - TSS region transcription start site region 154002
Tssr154003 18 80151467 to 80151517 50 - TSS region transcription start site region 154003
Gm41787 18 80157919 to 80161499 3580 - lncRNA gene predicted gene, 41787
Cpgi10294 18 80162629 to 80163029 400 CpG island CpG island 10294
Gm7447 18 80162752 to 80163514 762 + pseudogene predicted gene 7447
Tssr154004 18 80172914 to 80172950 36 - TSS region transcription start site region 154004
Tssr152090 18 80173097 to 80173120 23 + TSS region transcription start site region 152090
D18Dcr10 18 80184385 to 80184483 98 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 10
Tssr152091 18 80186222 to 80186231 9 + TSS region transcription start site region 152091
Tssr152092 18 80186233 to 80186245 12 + TSS region transcription start site region 152092
Rbfaos 18 80186239 to 80193569 7330 + lncRNA gene ribosome binding factor A, opposite strand
Gm46629 18 80188521 to 80192159 3638 - pseudogene predicted gene, 46629
Rbfa 18 80192264 to 80200619 8355 - protein coding gene ribosome binding factor A
Tssr154005 18 80198476 to 80198488 12 - TSS region transcription start site region 154005
Cpgi10295 18 80200245 to 80200916 671 CpG island CpG island 10295
Tssr154006 18 80200576 to 80200583 7 - TSS region transcription start site region 154006
Tssr154007 18 80200597 to 80200669 72 - TSS region transcription start site region 154007
Cpgi10296 18 80206511 to 80207475 964 CpG island CpG island 10296
Gm16286 18 80206765 to 80212741 5976 + protein coding gene predicted gene 16286
Tssr152093 18 80206775 to 80206881 106 + TSS region transcription start site region 152093
Txnl4a 18 80206795 to 80223533 16738 + protein coding gene thioredoxin-like 4A
Tssr152094 18 80206887 to 80206900 13 + TSS region transcription start site region 152094
Tssr152095 18 80207171 to 80207218 47 + TSS region transcription start site region 152095
Hsbp1l1 18 80229758 to 80247102 17344 - protein coding gene heat shock factor binding protein 1-like 1
Cpgi10297 18 80236216 to 80236978 762 CpG island CpG island 10297
Tssr154008 18 80236345 to 80236354 9 - TSS region transcription start site region 154008
Tssr154009 18 80236673 to 80236679 6 - TSS region transcription start site region 154009
Tssr154010 18 80236682 to 80236708 26 - TSS region transcription start site region 154010
Tssr154011 18 80236792 to 80236811 19 - TSS region transcription start site region 154011
Tssr154012 18 80236816 to 80236843 27 - TSS region transcription start site region 154012
Tssr154013 18 80236869 to 80236888 19 - TSS region transcription start site region 154013
Tssr152096 18 80253274 to 80253286 12 + TSS region transcription start site region 152096
Tssr5385 18 80253293 to 80253305 12 + TSS region transcription start site region 5385