Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:78049838-80169853

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Siglec15 18 78043614 to 78057395 13781 - protein coding gene sialic acid binding Ig-like lectin 15
Tssr153963 18 78057360 to 78057371 11 - TSS region transcription start site region 153963
Tssr153964 18 78057396 to 78057407 11 - TSS region transcription start site region 153964
Tssr153965 18 78057435 to 78057446 11 - TSS region transcription start site region 153965
Tssr152080 18 78062827 to 78062835 8 + TSS region transcription start site region 152080
Slc14a1 18 78100091 to 78142119 42028 - protein coding gene solute carrier family 14 (urea transporter), member 1
Tssr153966 18 78101408 to 78101422 14 - TSS region transcription start site region 153966
Tssr153967 18 78101476 to 78101487 11 - TSS region transcription start site region 153967
Gm36338 18 78120590 to 78143458 22868 + lncRNA gene predicted gene, 36338
Tssr153968 18 78123324 to 78123338 14 - TSS region transcription start site region 153968
Tssr5384 18 78123369 to 78123372 3 - TSS region transcription start site region 5384
Tssr153969 18 78123380 to 78123390 10 - TSS region transcription start site region 153969
Tssr153970 18 78142079 to 78142090 11 - TSS region transcription start site region 153970
Tssr153971 18 78142137 to 78142154 17 - TSS region transcription start site region 153971
Tssr153972 18 78142167 to 78142176 9 - TSS region transcription start site region 153972
Cpgi10286 18 78142431 to 78142827 396 CpG island CpG island 10286
Slc14a2 18 78146940 to 78209094 62154 - protein coding gene solute carrier family 14 (urea transporter), member 2
Tssr153973 18 78179163 to 78179176 13 - TSS region transcription start site region 153973
Tssr153974 18 78205867 to 78205878 11 - TSS region transcription start site region 153974
Tssr153975 18 78205889 to 78205917 28 - TSS region transcription start site region 153975
Tssr153976 18 78205921 to 78205977 56 - TSS region transcription start site region 153976
Tssr153977 18 78206396 to 78206407 11 - TSS region transcription start site region 153977
Tssr153978 18 78206408 to 78206419 11 - TSS region transcription start site region 153978
Gm36418 18 78313144 to 78353491 40347 + lncRNA gene predicted gene, 36418
Gm6133 18 78349759 to 78350387 628 + pseudogene predicted gene 6133
Tssr152081 18 78476862 to 78476871 9 + TSS region transcription start site region 152081
Tssr152082 18 78476872 to 78476883 11 + TSS region transcription start site region 152082
Tssr152083 18 78476896 to 78476901 5 + TSS region transcription start site region 152083
4931439C15Rik 18 78477037 to 78480716 3679 + lncRNA gene RIKEN cDNA 4931439C15 gene
Tssr152084 18 78494889 to 78494891 2 + TSS region transcription start site region 152084
Gm26430 18 78533458 to 78533564 106 + snRNA gene predicted gene, 26430
Tssr153979 18 78596895 to 78596907 12 - TSS region transcription start site region 153979
Gm23895 18 78648128 to 78648287 159 + snRNA gene predicted gene, 23895
Setbp1 18 78750380 to 79109391 359011 - protein coding gene SET binding protein 1
Cpgi10287 18 78755140 to 78755571 431 CpG island CpG island 10287
D18Mit46 18 78787908 to 78788050 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 46
Tssr152085 18 78827452 to 78827454 2 + TSS region transcription start site region 152085
Cpgi10288 18 78858805 to 78858991 186 CpG island CpG island 10288
Tssr153980 18 78859871 to 78859874 3 - TSS region transcription start site region 153980
Tssr153981 18 78867868 to 78867871 3 - TSS region transcription start site region 153981
Tssr153982 18 78912221 to 78912223 2 - TSS region transcription start site region 153982
D18Mit126 18 78946543 to 78946687 144 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 126
Tssr153983 18 78963333 to 78963338 5 - TSS region transcription start site region 153983
Tssr153984 18 79009624 to 79009655 31 - TSS region transcription start site region 153984
Tssr153985 18 79015180 to 79015194 14 - TSS region transcription start site region 153985
Tssr153986 18 79021160 to 79021162 2 - TSS region transcription start site region 153986
Tssr153987 18 79033357 to 79033371 14 - TSS region transcription start site region 153987
Tssr153988 18 79061054 to 79061059 5 - TSS region transcription start site region 153988
Tssr153989 18 79066735 to 79066748 13 - TSS region transcription start site region 153989
Tssr153990 18 79079659 to 79079663 4 - TSS region transcription start site region 153990
Cpgi10289 18 79108718 to 79110508 1790 CpG island CpG island 10289
Tssr153991 18 79109290 to 79109320 30 - TSS region transcription start site region 153991
Tssr153992 18 79109419 to 79109510 91 - TSS region transcription start site region 153992
Tssr153993 18 79109838 to 79109853 15 - TSS region transcription start site region 153993
Tssr153994 18 79109864 to 79109881 17 - TSS region transcription start site region 153994
Tssr153995 18 79109938 to 79109953 15 - TSS region transcription start site region 153995
Tssr153996 18 79109956 to 79109977 21 - TSS region transcription start site region 153996
Tssr153997 18 79109983 to 79110014 31 - TSS region transcription start site region 153997
Gm10265 18 79110180 to 79111831 1651 protein coding gene predicted gene 10265
Tssr153998 18 79110357 to 79110390 33 - TSS region transcription start site region 153998
Tssr153999 18 79110406 to 79110451 45 - TSS region transcription start site region 153999
Gm18978 18 79196835 to 79197697 862 + pseudogene predicted gene, 18978
Tssr152086 18 79258222 to 79258226 4 + TSS region transcription start site region 152086
Gm2116 18 79303579 to 79305063 1484 - pseudogene predicted gene 2116
Gm20593 18 79347383 to 79348729 1346 + pseudogene predicted gene, 20593
Tssr154000 18 79519755 to 79519763 8 - TSS region transcription start site region 154000
Gm25824 18 79553557 to 79553677 120 - snoRNA gene predicted gene, 25824
D18Mit45 18 79856096 to 79856245 149 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 45
Gm19062 18 79859674 to 79861899 2225 - pseudogene predicted gene, 19062
Gm26977 18 79875587 to 79876582 995 - pseudogene predicted gene, 26977
Gm5509 18 79934332 to 79935561 1229 + pseudogene predicted gene 5509
Gm18910 18 79936031 to 79936953 922 + pseudogene predicted gene, 18910
Tssr152087 18 79958943 to 79958955 12 + TSS region transcription start site region 152087
Gm5823 18 79958991 to 79959707 716 + pseudogene predicted gene 5823
AA684185 18 80012563 to 80012951 388 + unclassified gene expressed sequence AA684185
Gm36627 18 80016285 to 80016530 245 + pseudogene predicted gene, 36627
Gm36718 18 80019299 to 80020297 998 + protein coding gene predicted gene, 36718
Gm6172 18 80020201 to 80030222 10021 + pseudogene predicted gene 6172
Cpgi10290 18 80040437 to 80040614 177 CpG island CpG island 10290
Cpgi10291 18 80046552 to 80048091 1539 CpG island CpG island 10291
Tssr152088 18 80046854 to 80046904 50 + TSS region transcription start site region 152088
Pard6g 18 80046895 to 80119640 72745 + protein coding gene par-6 family cell polarity regulator gamma
Tssr152089 18 80046906 to 80046963 57 + TSS region transcription start site region 152089
Cpgi10292 18 80071611 to 80071777 166 CpG island CpG island 10292
Gm21886 18 80089297 to 80089962 665 - protein coding gene predicted gene, 21886
Tssr154001 18 80124565 to 80124595 30 - TSS region transcription start site region 154001
Adnp2 18 80126311 to 80151482 25171 - protein coding gene ADNP homeobox 2
Sicd1 18 80132049 to 89572790 9440741 QTL seizure-induced cell death 1
D18Mit129 18 80132049 to 80132186 137 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 129
D18Dcr9 18 80134389 to 80134484 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 9
Cpgi10293 18 80150657 to 80151905 1248 CpG island CpG island 10293
Tssr154002 18 80151412 to 80151442 30 - TSS region transcription start site region 154002
Tssr154003 18 80151467 to 80151517 50 - TSS region transcription start site region 154003
Gm41787 18 80157919 to 80161499 3580 - lncRNA gene predicted gene, 41787
Cpgi10294 18 80162629 to 80163029 400 CpG island CpG island 10294
Gm7447 18 80162752 to 80163514 762 + pseudogene predicted gene 7447