Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:77357221-80467223

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264 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Loxhd1 18 77281958 to 77442341 160383 + protein coding gene lipoxygenase homology domains 1
Cpgi10271 18 77366431 to 77366638 207 CpG island CpG island 10271
Tssr5381 18 77415585 to 77415598 13 + TSS region transcription start site region 5381
D18Dcr2 18 77426453 to 77426550 97 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 2
Cpgi10272 18 77441452 to 77441856 404 CpG island CpG island 10272
Gm18090 18 77449604 to 77451290 1686 + pseudogene predicted gene, 18090
Rnf165 18 77456110 to 77565136 109026 - protein coding gene ring finger protein 165
Cpgi10273 18 77458903 to 77459110 207 CpG island CpG island 10273
Tssr153941 18 77462191 to 77462193 2 - TSS region transcription start site region 153941
D18Mit106 18 77477727 to 77477863 136 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 106
Cpgi10274 18 77484170 to 77484483 313 CpG island CpG island 10274
Tssr153942 18 77498196 to 77498209 13 - TSS region transcription start site region 153942
Cpgi10275 18 77502374 to 77502546 172 CpG island CpG island 10275
Gm41783 18 77507693 to 77514607 6914 - lncRNA gene predicted gene, 41783
D18Dcr3 18 77524014 to 77524113 99 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 3
Tssr153943 18 77531162 to 77531194 32 - TSS region transcription start site region 153943
Tssr153944 18 77561706 to 77561711 5 - TSS region transcription start site region 153944
Tssr152038 18 77564141 to 77564149 8 + TSS region transcription start site region 152038
Cpgi10276 18 77564198 to 77566091 1893 CpG island CpG island 10276
Tssr153945 18 77565111 to 77565162 51 - TSS region transcription start site region 153945
Tssr153946 18 77565173 to 77565183 10 - TSS region transcription start site region 153946
Tssr153947 18 77565195 to 77565204 9 - TSS region transcription start site region 153947
Tssr153948 18 77565242 to 77565270 28 - TSS region transcription start site region 153948
Tssr153949 18 77565285 to 77565302 17 - TSS region transcription start site region 153949
Tssr153950 18 77565307 to 77565349 42 - TSS region transcription start site region 153950
Tssr153951 18 77565352 to 77565402 50 - TSS region transcription start site region 153951
Cpgi10277 18 77597561 to 77597712 151 CpG island CpG island 10277
Gm41784 18 77601852 to 77607451 5599 - lncRNA gene predicted gene, 41784
2310007O11Rik 18 77631488 to 77632251 763 unclassified gene RIKEN cDNA 2310007O11 gene
Tssr153952 18 77632139 to 77632145 6 - TSS region transcription start site region 153952
8030462N17Rik 18 77633281 to 77714010 80729 - protein coding gene RIKEN cDNA 8030462N17 gene
Gm26014 18 77682614 to 77682745 131 + snoRNA gene predicted gene, 26014
Tssr153953 18 77687461 to 77687465 4 - TSS region transcription start site region 153953
Tssr153954 18 77690185 to 77690189 4 - TSS region transcription start site region 153954
D18Dcr4 18 77704134 to 77704229 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 4
Cpgi10278 18 77712899 to 77714720 1821 CpG island CpG island 10278
Tssr153955 18 77713916 to 77713973 57 - TSS region transcription start site region 153955
Tssr153956 18 77713978 to 77714002 24 - TSS region transcription start site region 153956
Tssr152039 18 77714191 to 77714214 23 + TSS region transcription start site region 152039
4930465K10Rik 18 77714210 to 77715449 1239 + unclassified non-coding RNA gene RIKEN cDNA 4930465K10 gene
Tssr153957 18 77714446 to 77714501 55 - TSS region transcription start site region 153957
A330094K24Rik 18 77729492 to 77732784 3292 - lincRNA gene RIKEN cDNA A330094K24 gene
Tssr153958 18 77732724 to 77732739 15 - TSS region transcription start site region 153958
Tssr152040 18 77733030 to 77733032 2 + TSS region transcription start site region 152040
Cpgi10279 18 77742591 to 77742978 387 CpG island CpG island 10279
5730552O08Rik 18 77743834 to 77746943 3109 unclassified gene RIKEN cDNA 5730552O08 gene
Haus1 18 77757567 to 77767780 10213 - protein coding gene HAUS augmin-like complex, subunit 1
Cpgi10280 18 77767430 to 77767937 507 CpG island CpG island 10280
Tssr153959 18 77767752 to 77767804 52 - TSS region transcription start site region 153959
Cpgi10281 18 77773643 to 77774694 1051 CpG island CpG island 10281
Atp5a1 18 77773768 to 77782869 9101 + protein coding gene ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
Tssr152041 18 77773984 to 77774006 22 + TSS region transcription start site region 152041
Tssr152042 18 77775788 to 77775805 17 + TSS region transcription start site region 152042
Tssr153960 18 77778534 to 77778572 38 - TSS region transcription start site region 153960
Tssr152043 18 77778579 to 77778611 32 + TSS region transcription start site region 152043
Tssr152044 18 77778755 to 77778797 42 + TSS region transcription start site region 152044
Tssr152045 18 77779846 to 77779897 51 + TSS region transcription start site region 152045
Tssr152046 18 77780070 to 77780120 50 + TSS region transcription start site region 152046
Tssr152047 18 77781839 to 77781860 21 + TSS region transcription start site region 152047
D18Mit47 18 77786076 to 77786175 99 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 47
Tssr152048 18 77789911 to 77789922 11 + TSS region transcription start site region 152048
Tssr152049 18 77790526 to 77790531 5 + TSS region transcription start site region 152049
F830208F22Rik 18 77793259 to 77796743 3484 - unclassified non-coding RNA gene RIKEN cDNA F830208F22 gene
Cpgi10282 18 77794201 to 77795345 1144 CpG island CpG island 10282
Tssr152050 18 77794361 to 77794382 21 + TSS region transcription start site region 152050
Tssr152051 18 77794532 to 77794543 11 + TSS region transcription start site region 152051
Pstpip2 18 77794545 to 77882007 87462 + protein coding gene proline-serine-threonine phosphatase-interacting protein 2
Tssr152052 18 77794557 to 77794610 53 + TSS region transcription start site region 152052
Tssr5382 18 77794698 to 77794719 21 + TSS region transcription start site region 5382
Tssr153961 18 77796214 to 77796226 12 - TSS region transcription start site region 153961
Tssr152053 18 77800188 to 77800196 8 + TSS region transcription start site region 152053
Gm23954 18 77806314 to 77806666 352 - unclassified non-coding RNA gene predicted gene, 23954
Tssr152054 18 77814353 to 77814366 13 + TSS region transcription start site region 152054
Tssr152055 18 77820355 to 77820381 26 + TSS region transcription start site region 152055
Tssr152056 18 77825379 to 77825401 22 + TSS region transcription start site region 152056
Tssr152057 18 77832971 to 77832976 5 + TSS region transcription start site region 152057
Tssr152058 18 77835179 to 77835190 11 + TSS region transcription start site region 152058
Tssr152059 18 77847489 to 77847498 9 + TSS region transcription start site region 152059
Tssr152060 18 77870230 to 77870260 30 + TSS region transcription start site region 152060
Tssr152061 18 77870266 to 77870306 40 + TSS region transcription start site region 152061
Tssr152062 18 77875336 to 77875373 37 + TSS region transcription start site region 152062
Tssr152063 18 77875399 to 77875408 9 + TSS region transcription start site region 152063
Tssr152064 18 77879496 to 77879524 28 + TSS region transcription start site region 152064
Tssr152065 18 77879531 to 77879541 10 + TSS region transcription start site region 152065
Tssr152066 18 77882188 to 77882204 16 + TSS region transcription start site region 152066
Tssr152067 18 77882220 to 77882232 12 + TSS region transcription start site region 152067
Tssr152068 18 77882250 to 77882261 11 + TSS region transcription start site region 152068
Tssr152069 18 77882351 to 77882362 11 + TSS region transcription start site region 152069
Tssr152070 18 77882466 to 77882477 11 + TSS region transcription start site region 152070
Tssr152071 18 77882497 to 77882515 18 + TSS region transcription start site region 152071
Tssr152072 18 77882518 to 77882546 28 + TSS region transcription start site region 152072
Tssr152073 18 77882551 to 77882564 13 + TSS region transcription start site region 152073
Tssr152074 18 77882580 to 77882587 7 + TSS region transcription start site region 152074
Tssr152075 18 77882600 to 77882616 16 + TSS region transcription start site region 152075
Cpgi10283 18 77938155 to 77938846 691 CpG island CpG island 10283
Tssr152076 18 77938421 to 77938451 30 + TSS region transcription start site region 152076
Tssr152077 18 77938452 to 77938477 25 + TSS region transcription start site region 152077
Epg5 18 77938467 to 78035027 96560 + protein coding gene ectopic P-granules autophagy protein 5 homolog (C. elegans)
Tssr5383 18 77948839 to 77948864 25 + TSS region transcription start site region 5383
Tssr152078 18 78030028 to 78030047 19 + TSS region transcription start site region 152078
Tssr152079 18 78030066 to 78030078 12 + TSS region transcription start site region 152079
Siglec15 18 78043614 to 78057395 13781 - protein coding gene sialic acid binding Ig-like lectin 15
Cpgi10284 18 78046878 to 78047947 1069 CpG island CpG island 10284
Cpgi10285 18 78048223 to 78049134 911 CpG island CpG island 10285
Tssr153962 18 78049447 to 78049457 10 - TSS region transcription start site region 153962
Tssr153963 18 78057360 to 78057371 11 - TSS region transcription start site region 153963
Tssr153964 18 78057396 to 78057407 11 - TSS region transcription start site region 153964
Tssr153965 18 78057435 to 78057446 11 - TSS region transcription start site region 153965
Tssr152080 18 78062827 to 78062835 8 + TSS region transcription start site region 152080
Slc14a1 18 78100091 to 78142119 42028 - protein coding gene solute carrier family 14 (urea transporter), member 1
Tssr153966 18 78101408 to 78101422 14 - TSS region transcription start site region 153966
Tssr153967 18 78101476 to 78101487 11 - TSS region transcription start site region 153967
Gm36338 18 78120590 to 78143458 22868 + lncRNA gene predicted gene, 36338
Tssr153968 18 78123324 to 78123338 14 - TSS region transcription start site region 153968
Tssr5384 18 78123369 to 78123372 3 - TSS region transcription start site region 5384
Tssr153969 18 78123380 to 78123390 10 - TSS region transcription start site region 153969
Tssr153970 18 78142079 to 78142090 11 - TSS region transcription start site region 153970
Tssr153971 18 78142137 to 78142154 17 - TSS region transcription start site region 153971
Tssr153972 18 78142167 to 78142176 9 - TSS region transcription start site region 153972
Cpgi10286 18 78142431 to 78142827 396 CpG island CpG island 10286
Slc14a2 18 78146940 to 78209094 62154 - protein coding gene solute carrier family 14 (urea transporter), member 2
Tssr153973 18 78179163 to 78179176 13 - TSS region transcription start site region 153973
Tssr153974 18 78205867 to 78205878 11 - TSS region transcription start site region 153974
Tssr153975 18 78205889 to 78205917 28 - TSS region transcription start site region 153975
Tssr153976 18 78205921 to 78205977 56 - TSS region transcription start site region 153976
Tssr153977 18 78206396 to 78206407 11 - TSS region transcription start site region 153977
Tssr153978 18 78206408 to 78206419 11 - TSS region transcription start site region 153978
Gm36418 18 78313144 to 78353491 40347 + lncRNA gene predicted gene, 36418
Gm6133 18 78349759 to 78350387 628 + pseudogene predicted gene 6133
Tssr152081 18 78476862 to 78476871 9 + TSS region transcription start site region 152081
Tssr152082 18 78476872 to 78476883 11 + TSS region transcription start site region 152082
Tssr152083 18 78476896 to 78476901 5 + TSS region transcription start site region 152083
4931439C15Rik 18 78477037 to 78480716 3679 + lncRNA gene RIKEN cDNA 4931439C15 gene
Tssr152084 18 78494889 to 78494891 2 + TSS region transcription start site region 152084
Gm26430 18 78533458 to 78533564 106 + snRNA gene predicted gene, 26430
Tssr153979 18 78596895 to 78596907 12 - TSS region transcription start site region 153979
Gm23895 18 78648128 to 78648287 159 + snRNA gene predicted gene, 23895
Setbp1 18 78750380 to 79109391 359011 - protein coding gene SET binding protein 1
Cpgi10287 18 78755140 to 78755571 431 CpG island CpG island 10287
D18Mit46 18 78787908 to 78788050 142 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 46
Tssr152085 18 78827452 to 78827454 2 + TSS region transcription start site region 152085
Cpgi10288 18 78858805 to 78858991 186 CpG island CpG island 10288
Tssr153980 18 78859871 to 78859874 3 - TSS region transcription start site region 153980
Tssr153981 18 78867868 to 78867871 3 - TSS region transcription start site region 153981
Tssr153982 18 78912221 to 78912223 2 - TSS region transcription start site region 153982
D18Mit126 18 78946543 to 78946687 144 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 126
Tssr153983 18 78963333 to 78963338 5 - TSS region transcription start site region 153983
Tssr153984 18 79009624 to 79009655 31 - TSS region transcription start site region 153984
Tssr153985 18 79015180 to 79015194 14 - TSS region transcription start site region 153985
Tssr153986 18 79021160 to 79021162 2 - TSS region transcription start site region 153986
Tssr153987 18 79033357 to 79033371 14 - TSS region transcription start site region 153987
Tssr153988 18 79061054 to 79061059 5 - TSS region transcription start site region 153988
Tssr153989 18 79066735 to 79066748 13 - TSS region transcription start site region 153989
Tssr153990 18 79079659 to 79079663 4 - TSS region transcription start site region 153990
Cpgi10289 18 79108718 to 79110508 1790 CpG island CpG island 10289
Tssr153991 18 79109290 to 79109320 30 - TSS region transcription start site region 153991
Tssr153992 18 79109419 to 79109510 91 - TSS region transcription start site region 153992
Tssr153993 18 79109838 to 79109853 15 - TSS region transcription start site region 153993
Tssr153994 18 79109864 to 79109881 17 - TSS region transcription start site region 153994
Tssr153995 18 79109938 to 79109953 15 - TSS region transcription start site region 153995
Tssr153996 18 79109956 to 79109977 21 - TSS region transcription start site region 153996
Tssr153997 18 79109983 to 79110014 31 - TSS region transcription start site region 153997
Gm10265 18 79110180 to 79111831 1651 protein coding gene predicted gene 10265
Tssr153998 18 79110357 to 79110390 33 - TSS region transcription start site region 153998
Tssr153999 18 79110406 to 79110451 45 - TSS region transcription start site region 153999
Gm18978 18 79196835 to 79197697 862 + pseudogene predicted gene, 18978
Tssr152086 18 79258222 to 79258226 4 + TSS region transcription start site region 152086
Gm2116 18 79303579 to 79305063 1484 - pseudogene predicted gene 2116
Gm20593 18 79347383 to 79348729 1346 + pseudogene predicted gene, 20593
Tssr154000 18 79519755 to 79519763 8 - TSS region transcription start site region 154000
Gm25824 18 79553557 to 79553677 120 - snoRNA gene predicted gene, 25824
D18Mit45 18 79856096 to 79856245 149 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 45
Gm19062 18 79859674 to 79861899 2225 - pseudogene predicted gene, 19062
Gm26977 18 79875587 to 79876582 995 - pseudogene predicted gene, 26977
Gm5509 18 79934332 to 79935561 1229 + pseudogene predicted gene 5509
Gm18910 18 79936031 to 79936953 922 + pseudogene predicted gene, 18910
Tssr152087 18 79958943 to 79958955 12 + TSS region transcription start site region 152087
Gm5823 18 79958991 to 79959707 716 + pseudogene predicted gene 5823
AA684185 18 80012563 to 80012951 388 + unclassified gene expressed sequence AA684185
Gm36627 18 80016285 to 80016530 245 + pseudogene predicted gene, 36627
Gm36718 18 80019299 to 80020297 998 + protein coding gene predicted gene, 36718
Gm6172 18 80020201 to 80030222 10021 + pseudogene predicted gene 6172
Cpgi10290 18 80040437 to 80040614 177 CpG island CpG island 10290
Cpgi10291 18 80046552 to 80048091 1539 CpG island CpG island 10291
Tssr152088 18 80046854 to 80046904 50 + TSS region transcription start site region 152088
Pard6g 18 80046895 to 80119640 72745 + protein coding gene par-6 family cell polarity regulator gamma
Tssr152089 18 80046906 to 80046963 57 + TSS region transcription start site region 152089
Cpgi10292 18 80071611 to 80071777 166 CpG island CpG island 10292
Gm21886 18 80089297 to 80089962 665 - protein coding gene predicted gene, 21886
Tssr154001 18 80124565 to 80124595 30 - TSS region transcription start site region 154001
Adnp2 18 80126311 to 80151482 25171 - protein coding gene ADNP homeobox 2
D18Mit129 18 80132049 to 80132186 137 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 129
Sicd1 18 80132049 to 89572790 9440741 QTL seizure-induced cell death 1
D18Dcr9 18 80134389 to 80134484 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 9
Cpgi10293 18 80150657 to 80151905 1248 CpG island CpG island 10293
Tssr154002 18 80151412 to 80151442 30 - TSS region transcription start site region 154002
Tssr154003 18 80151467 to 80151517 50 - TSS region transcription start site region 154003
Gm41787 18 80157919 to 80161499 3580 - lncRNA gene predicted gene, 41787
Cpgi10294 18 80162629 to 80163029 400 CpG island CpG island 10294
Gm7447 18 80162752 to 80163514 762 + pseudogene predicted gene 7447