Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:76936692-77627242

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ier3ip1 18 76930027 to 76941614 11587 + protein coding gene immediate early response 3 interacting protein 1
Cpgi10263 18 76943853 to 76944534 681 CpG island CpG island 10263
Tssr153934 18 76944063 to 76944080 17 - TSS region transcription start site region 153934
Hdhd2 18 76944079 to 76972171 28092 + protein coding gene haloacid dehalogenase-like hydrolase domain containing 2
Tssr152006 18 76944094 to 76944168 74 + TSS region transcription start site region 152006
Tssr152007 18 76944392 to 76944444 52 + TSS region transcription start site region 152007
Tssr152008 18 76949034 to 76949041 7 + TSS region transcription start site region 152008
Tssr152009 18 76954895 to 76954906 11 + TSS region transcription start site region 152009
B430105A11Rik 18 76974829 to 76976161 1332 unclassified gene RIKEN cDNA B430105A11 gene
Katnal2 18 76977148 to 77047308 70160 - protein coding gene katanin p60 subunit A-like 2
Tssr152010 18 77006732 to 77006735 3 + TSS region transcription start site region 152010
Tssr153935 18 77016581 to 77016592 11 - TSS region transcription start site region 153935
Tssr152011 18 77038375 to 77038387 12 + TSS region transcription start site region 152011
Tssr152012 18 77038405 to 77038422 17 + TSS region transcription start site region 152012
Tssr152013 18 77038561 to 77038597 36 + TSS region transcription start site region 152013
Tssr152014 18 77038878 to 77038895 17 + TSS region transcription start site region 152014
Tssr153936 18 77040199 to 77040209 10 - TSS region transcription start site region 153936
Cpgi10264 18 77046883 to 77047515 632 CpG island CpG island 10264
Tssr153937 18 77047268 to 77047279 11 - TSS region transcription start site region 153937
Tssr153938 18 77047282 to 77047313 31 - TSS region transcription start site region 153938
Tssr152015 18 77057427 to 77057429 2 + TSS region transcription start site region 152015
Gm41782 18 77060492 to 77061333 841 - lncRNA gene predicted gene, 41782
4930520E11Rik 18 77064093 to 77065219 1126 - lncRNA gene RIKEN cDNA 4930520E11 gene
Cpgi10265 18 77064777 to 77066009 1232 CpG island CpG island 10265
Tssr153939 18 77065038 to 77065069 31 - TSS region transcription start site region 153939
Tssr153940 18 77065072 to 77065119 47 - TSS region transcription start site region 153940
Tssr152016 18 77065195 to 77065250 55 + TSS region transcription start site region 152016
Pias2 18 77065208 to 77155708 90500 + protein coding gene protein inhibitor of activated STAT 2
Tssr152017 18 77065477 to 77065545 68 + TSS region transcription start site region 152017
Tssr5378 18 77065558 to 77065572 14 - TSS region transcription start site region 5378
Tssr152018 18 77065584 to 77065587 3 + TSS region transcription start site region 152018
Tssr152019 18 77065637 to 77065685 48 + TSS region transcription start site region 152019
Tssr152020 18 77065702 to 77065705 3 + TSS region transcription start site region 152020
Tssr152021 18 77070736 to 77070744 8 + TSS region transcription start site region 152021
Tssr152022 18 77070749 to 77070765 16 + TSS region transcription start site region 152022
Tssr152023 18 77082182 to 77082188 6 + TSS region transcription start site region 152023
Tssr152024 18 77117615 to 77117624 9 + TSS region transcription start site region 152024
Tssr152025 18 77119809 to 77119827 18 + TSS region transcription start site region 152025
Tssr152026 18 77137320 to 77137334 14 + TSS region transcription start site region 152026
Tssr152027 18 77144310 to 77144321 11 + TSS region transcription start site region 152027
Tssr152028 18 77144998 to 77145010 12 + TSS region transcription start site region 152028
A730094L24Rik 18 77161791 to 77165258 3467 unclassified gene RIKEN cDNA A730094L24 gene
Tssr5379 18 77177073 to 77177098 25 + TSS region transcription start site region 5379
Gm7276 18 77185006 to 77186257 1251 - protein coding gene predicted gene 7276
Cpgi10266 18 77185212 to 77186448 1236 CpG island CpG island 10266
Tssr5380 18 77185626 to 77185639 13 + TSS region transcription start site region 5380
Tssr152029 18 77185815 to 77185879 64 + TSS region transcription start site region 152029
St8sia5 18 77185853 to 77255450 69597 + protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
Tssr152030 18 77186040 to 77186048 8 + TSS region transcription start site region 152030
Tssr152031 18 77186059 to 77186078 19 + TSS region transcription start site region 152031
Tssr152032 18 77186087 to 77186117 30 + TSS region transcription start site region 152032
Tssr152033 18 77194769 to 77194773 4 + TSS region transcription start site region 152033
Tssr152034 18 77196010 to 77196019 9 + TSS region transcription start site region 152034
Tssr152035 18 77196178 to 77196206 28 + TSS region transcription start site region 152035
Cpgi10267 18 77198107 to 77198549 442 CpG island CpG island 10267
Gm15957 18 77218354 to 77219327 973 - pseudogene predicted gene 15957
Cpgi10268 18 77254397 to 77254856 459 CpG island CpG island 10268
Cpgi10269 18 77277576 to 77277839 263 CpG island CpG island 10269
Tssr152036 18 77281656 to 77281664 8 + TSS region transcription start site region 152036
Tssr152037 18 77281676 to 77281696 20 + TSS region transcription start site region 152037
Cpgi10270 18 77281692 to 77282242 550 CpG island CpG island 10270
Loxhd1 18 77281958 to 77442341 160383 + protein coding gene lipoxygenase homology domains 1
Cpgi10271 18 77366431 to 77366638 207 CpG island CpG island 10271
Tssr5381 18 77415585 to 77415598 13 + TSS region transcription start site region 5381
D18Dcr2 18 77426453 to 77426550 97 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 2
Cpgi10272 18 77441452 to 77441856 404 CpG island CpG island 10272
Gm18090 18 77449604 to 77451290 1686 + pseudogene predicted gene, 18090
Rnf165 18 77456110 to 77565136 109026 - protein coding gene ring finger protein 165
Cpgi10273 18 77458903 to 77459110 207 CpG island CpG island 10273
Tssr153941 18 77462191 to 77462193 2 - TSS region transcription start site region 153941
D18Mit106 18 77477727 to 77477863 136 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 106
Cpgi10274 18 77484170 to 77484483 313 CpG island CpG island 10274
Tssr153942 18 77498196 to 77498209 13 - TSS region transcription start site region 153942
Cpgi10275 18 77502374 to 77502546 172 CpG island CpG island 10275
Gm41783 18 77507693 to 77514607 6914 - lncRNA gene predicted gene, 41783
D18Dcr3 18 77524014 to 77524113 99 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 3
Tssr153943 18 77531162 to 77531194 32 - TSS region transcription start site region 153943
Tssr153944 18 77561706 to 77561711 5 - TSS region transcription start site region 153944
Tssr152038 18 77564141 to 77564149 8 + TSS region transcription start site region 152038
Cpgi10276 18 77564198 to 77566091 1893 CpG island CpG island 10276
Tssr153945 18 77565111 to 77565162 51 - TSS region transcription start site region 153945
Tssr153946 18 77565173 to 77565183 10 - TSS region transcription start site region 153946
Tssr153947 18 77565195 to 77565204 9 - TSS region transcription start site region 153947
Tssr153948 18 77565242 to 77565270 28 - TSS region transcription start site region 153948
Tssr153949 18 77565285 to 77565302 17 - TSS region transcription start site region 153949
Tssr153950 18 77565307 to 77565349 42 - TSS region transcription start site region 153950
Tssr153951 18 77565352 to 77565402 50 - TSS region transcription start site region 153951
Cpgi10277 18 77597561 to 77597712 151 CpG island CpG island 10277
Gm41784 18 77601852 to 77607451 5599 - lncRNA gene predicted gene, 41784