Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:76490847-77950450

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pgis1 18 53157950 to 76826598 23668648 QTL proteoglycan induced spondylitis 1
Par2 18 70229262 to 76619461 6390199 QTL pulmonary adenoma resistance 2
Cpgi10253 18 76543854 to 76544330 476 CpG island CpG island 10253
Gm31875 18 76553680 to 76555240 1560 - lncRNA gene predicted gene, 31875
Tssr153932 18 76555222 to 76555231 9 - TSS region transcription start site region 153932
Tssr151999 18 76595740 to 76595744 4 + TSS region transcription start site region 151999
Gm31933 18 76613896 to 76633066 19170 - lncRNA gene predicted gene, 31933
D18Mit162 18 76619361 to 76619461 100 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 162
Tssr153933 18 76632865 to 76632875 10 - TSS region transcription start site region 153933
Gm7273 18 76636806 to 76637348 542 + pseudogene predicted gene 7273
Cpgi10254 18 76653365 to 76653523 158 CpG island CpG island 10254
D18Dcr1 18 76727702 to 76727797 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 1
D18Mit48 18 76808128 to 76808295 167 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 48
D18Mit80 18 76826489 to 76826598 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 80
Pgia11 18 76826489 to 76826598 109 QTL proteoglycan induced arthritis 11
Cpgi10255 18 76844211 to 76844673 462 CpG island CpG island 10255
Cpgi10256 18 76846506 to 76847588 1082 CpG island CpG island 10256
Sluc28 18 76847626 to 76847720 94 QTL susceptibility to lung cancer 28
D18Mit7 18 76847626 to 76847720 94 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 7
Cpgi10257 18 76853077 to 76853432 355 CpG island CpG island 10257
Cpgi10258 18 76855812 to 76856471 659 CpG island CpG island 10258
Tssr152000 18 76856133 to 76856148 15 + TSS region transcription start site region 152000
Tssr152001 18 76856155 to 76856166 11 + TSS region transcription start site region 152001
Tssr152002 18 76856311 to 76856327 16 + TSS region transcription start site region 152002
Skor2 18 76856405 to 76900342 43937 + protein coding gene SKI family transcriptional corepressor 2
Cpgi10259 18 76856742 to 76857083 341 CpG island CpG island 10259
Cpgi10260 18 76858491 to 76861079 2588 CpG island CpG island 10260
Tssr152003 18 76860499 to 76860516 17 + TSS region transcription start site region 152003
Gm32058 18 76922903 to 76929938 7035 - lncRNA gene predicted gene, 32058
Cpgi10261 18 76925531 to 76926026 495 CpG island CpG island 10261
Cpgi10262 18 76929828 to 76930382 554 CpG island CpG island 10262
Tssr152004 18 76930021 to 76930101 80 + TSS region transcription start site region 152004
Ier3ip1 18 76930027 to 76941614 11587 + protein coding gene immediate early response 3 interacting protein 1
Tssr152005 18 76930482 to 76930484 2 + TSS region transcription start site region 152005
Cpgi10263 18 76943853 to 76944534 681 CpG island CpG island 10263
Tssr153934 18 76944063 to 76944080 17 - TSS region transcription start site region 153934
Hdhd2 18 76944079 to 76972171 28092 + protein coding gene haloacid dehalogenase-like hydrolase domain containing 2
Tssr152006 18 76944094 to 76944168 74 + TSS region transcription start site region 152006
Tssr152007 18 76944392 to 76944444 52 + TSS region transcription start site region 152007
Tssr152008 18 76949034 to 76949041 7 + TSS region transcription start site region 152008
Tssr152009 18 76954895 to 76954906 11 + TSS region transcription start site region 152009
B430105A11Rik 18 76974829 to 76976161 1332 unclassified gene RIKEN cDNA B430105A11 gene
Katnal2 18 76977148 to 77047308 70160 - protein coding gene katanin p60 subunit A-like 2
Tssr152010 18 77006732 to 77006735 3 + TSS region transcription start site region 152010
Tssr153935 18 77016581 to 77016592 11 - TSS region transcription start site region 153935
Tssr152011 18 77038375 to 77038387 12 + TSS region transcription start site region 152011
Tssr152012 18 77038405 to 77038422 17 + TSS region transcription start site region 152012
Tssr152013 18 77038561 to 77038597 36 + TSS region transcription start site region 152013
Tssr152014 18 77038878 to 77038895 17 + TSS region transcription start site region 152014
Tssr153936 18 77040199 to 77040209 10 - TSS region transcription start site region 153936
Cpgi10264 18 77046883 to 77047515 632 CpG island CpG island 10264
Tssr153937 18 77047268 to 77047279 11 - TSS region transcription start site region 153937
Tssr153938 18 77047282 to 77047313 31 - TSS region transcription start site region 153938
Tssr152015 18 77057427 to 77057429 2 + TSS region transcription start site region 152015
Gm41782 18 77060492 to 77061333 841 - lncRNA gene predicted gene, 41782
4930520E11Rik 18 77064093 to 77065219 1126 - lncRNA gene RIKEN cDNA 4930520E11 gene
Cpgi10265 18 77064777 to 77066009 1232 CpG island CpG island 10265
Tssr153939 18 77065038 to 77065069 31 - TSS region transcription start site region 153939
Tssr153940 18 77065072 to 77065119 47 - TSS region transcription start site region 153940
Tssr152016 18 77065195 to 77065250 55 + TSS region transcription start site region 152016
Pias2 18 77065208 to 77155708 90500 + protein coding gene protein inhibitor of activated STAT 2
Tssr152017 18 77065477 to 77065545 68 + TSS region transcription start site region 152017
Tssr5378 18 77065558 to 77065572 14 - TSS region transcription start site region 5378
Tssr152018 18 77065584 to 77065587 3 + TSS region transcription start site region 152018
Tssr152019 18 77065637 to 77065685 48 + TSS region transcription start site region 152019
Tssr152020 18 77065702 to 77065705 3 + TSS region transcription start site region 152020
Tssr152021 18 77070736 to 77070744 8 + TSS region transcription start site region 152021
Tssr152022 18 77070749 to 77070765 16 + TSS region transcription start site region 152022
Tssr152023 18 77082182 to 77082188 6 + TSS region transcription start site region 152023
Tssr152024 18 77117615 to 77117624 9 + TSS region transcription start site region 152024
Tssr152025 18 77119809 to 77119827 18 + TSS region transcription start site region 152025
Tssr152026 18 77137320 to 77137334 14 + TSS region transcription start site region 152026
Tssr152027 18 77144310 to 77144321 11 + TSS region transcription start site region 152027
Tssr152028 18 77144998 to 77145010 12 + TSS region transcription start site region 152028
A730094L24Rik 18 77161791 to 77165258 3467 unclassified gene RIKEN cDNA A730094L24 gene
Tssr5379 18 77177073 to 77177098 25 + TSS region transcription start site region 5379
Gm7276 18 77185006 to 77186257 1251 - protein coding gene predicted gene 7276
Cpgi10266 18 77185212 to 77186448 1236 CpG island CpG island 10266
Tssr5380 18 77185626 to 77185639 13 + TSS region transcription start site region 5380
Tssr152029 18 77185815 to 77185879 64 + TSS region transcription start site region 152029
St8sia5 18 77185853 to 77255450 69597 + protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
Tssr152030 18 77186040 to 77186048 8 + TSS region transcription start site region 152030
Tssr152031 18 77186059 to 77186078 19 + TSS region transcription start site region 152031
Tssr152032 18 77186087 to 77186117 30 + TSS region transcription start site region 152032
Tssr152033 18 77194769 to 77194773 4 + TSS region transcription start site region 152033
Tssr152034 18 77196010 to 77196019 9 + TSS region transcription start site region 152034
Tssr152035 18 77196178 to 77196206 28 + TSS region transcription start site region 152035
Cpgi10267 18 77198107 to 77198549 442 CpG island CpG island 10267
Gm15957 18 77218354 to 77219327 973 - pseudogene predicted gene 15957
Cpgi10268 18 77254397 to 77254856 459 CpG island CpG island 10268
Cpgi10269 18 77277576 to 77277839 263 CpG island CpG island 10269
Tssr152036 18 77281656 to 77281664 8 + TSS region transcription start site region 152036
Tssr152037 18 77281676 to 77281696 20 + TSS region transcription start site region 152037
Cpgi10270 18 77281692 to 77282242 550 CpG island CpG island 10270
Loxhd1 18 77281958 to 77442341 160383 + protein coding gene lipoxygenase homology domains 1
Cpgi10271 18 77366431 to 77366638 207 CpG island CpG island 10271
Tssr5381 18 77415585 to 77415598 13 + TSS region transcription start site region 5381
D18Dcr2 18 77426453 to 77426550 97 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 2
Cpgi10272 18 77441452 to 77441856 404 CpG island CpG island 10272
Gm18090 18 77449604 to 77451290 1686 + pseudogene predicted gene, 18090
Rnf165 18 77456110 to 77565136 109026 - protein coding gene ring finger protein 165
Cpgi10273 18 77458903 to 77459110 207 CpG island CpG island 10273
Tssr153941 18 77462191 to 77462193 2 - TSS region transcription start site region 153941
D18Mit106 18 77477727 to 77477863 136 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 106
Cpgi10274 18 77484170 to 77484483 313 CpG island CpG island 10274
Tssr153942 18 77498196 to 77498209 13 - TSS region transcription start site region 153942
Cpgi10275 18 77502374 to 77502546 172 CpG island CpG island 10275
Gm41783 18 77507693 to 77514607 6914 - lncRNA gene predicted gene, 41783
D18Dcr3 18 77524014 to 77524113 99 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 3
Tssr153943 18 77531162 to 77531194 32 - TSS region transcription start site region 153943
Tssr153944 18 77561706 to 77561711 5 - TSS region transcription start site region 153944
Tssr152038 18 77564141 to 77564149 8 + TSS region transcription start site region 152038
Cpgi10276 18 77564198 to 77566091 1893 CpG island CpG island 10276
Tssr153945 18 77565111 to 77565162 51 - TSS region transcription start site region 153945
Tssr153946 18 77565173 to 77565183 10 - TSS region transcription start site region 153946
Tssr153947 18 77565195 to 77565204 9 - TSS region transcription start site region 153947
Tssr153948 18 77565242 to 77565270 28 - TSS region transcription start site region 153948
Tssr153949 18 77565285 to 77565302 17 - TSS region transcription start site region 153949
Tssr153950 18 77565307 to 77565349 42 - TSS region transcription start site region 153950
Tssr153951 18 77565352 to 77565402 50 - TSS region transcription start site region 153951
Cpgi10277 18 77597561 to 77597712 151 CpG island CpG island 10277
Gm41784 18 77601852 to 77607451 5599 - lncRNA gene predicted gene, 41784
2310007O11Rik 18 77631488 to 77632251 763 unclassified gene RIKEN cDNA 2310007O11 gene
Tssr153952 18 77632139 to 77632145 6 - TSS region transcription start site region 153952
8030462N17Rik 18 77633281 to 77714010 80729 - protein coding gene RIKEN cDNA 8030462N17 gene
Gm26014 18 77682614 to 77682745 131 + snoRNA gene predicted gene, 26014
Tssr153953 18 77687461 to 77687465 4 - TSS region transcription start site region 153953
Tssr153954 18 77690185 to 77690189 4 - TSS region transcription start site region 153954
D18Dcr4 18 77704134 to 77704229 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 4
Cpgi10278 18 77712899 to 77714720 1821 CpG island CpG island 10278
Tssr153955 18 77713916 to 77713973 57 - TSS region transcription start site region 153955
Tssr153956 18 77713978 to 77714002 24 - TSS region transcription start site region 153956
Tssr152039 18 77714191 to 77714214 23 + TSS region transcription start site region 152039
4930465K10Rik 18 77714210 to 77715449 1239 + unclassified non-coding RNA gene RIKEN cDNA 4930465K10 gene
Tssr153957 18 77714446 to 77714501 55 - TSS region transcription start site region 153957
A330094K24Rik 18 77729492 to 77732784 3292 - lincRNA gene RIKEN cDNA A330094K24 gene
Tssr153958 18 77732724 to 77732739 15 - TSS region transcription start site region 153958
Tssr152040 18 77733030 to 77733032 2 + TSS region transcription start site region 152040
Cpgi10279 18 77742591 to 77742978 387 CpG island CpG island 10279
5730552O08Rik 18 77743834 to 77746943 3109 unclassified gene RIKEN cDNA 5730552O08 gene
Haus1 18 77757567 to 77767780 10213 - protein coding gene HAUS augmin-like complex, subunit 1
Cpgi10280 18 77767430 to 77767937 507 CpG island CpG island 10280
Tssr153959 18 77767752 to 77767804 52 - TSS region transcription start site region 153959
Cpgi10281 18 77773643 to 77774694 1051 CpG island CpG island 10281
Atp5a1 18 77773768 to 77782869 9101 + protein coding gene ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
Tssr152041 18 77773984 to 77774006 22 + TSS region transcription start site region 152041
Tssr152042 18 77775788 to 77775805 17 + TSS region transcription start site region 152042
Tssr153960 18 77778534 to 77778572 38 - TSS region transcription start site region 153960
Tssr152043 18 77778579 to 77778611 32 + TSS region transcription start site region 152043
Tssr152044 18 77778755 to 77778797 42 + TSS region transcription start site region 152044
Tssr152045 18 77779846 to 77779897 51 + TSS region transcription start site region 152045
Tssr152046 18 77780070 to 77780120 50 + TSS region transcription start site region 152046
Tssr152047 18 77781839 to 77781860 21 + TSS region transcription start site region 152047
D18Mit47 18 77786076 to 77786175 99 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 47
Tssr152048 18 77789911 to 77789922 11 + TSS region transcription start site region 152048
Tssr152049 18 77790526 to 77790531 5 + TSS region transcription start site region 152049
F830208F22Rik 18 77793259 to 77796743 3484 - unclassified non-coding RNA gene RIKEN cDNA F830208F22 gene
Cpgi10282 18 77794201 to 77795345 1144 CpG island CpG island 10282
Tssr152050 18 77794361 to 77794382 21 + TSS region transcription start site region 152050
Tssr152051 18 77794532 to 77794543 11 + TSS region transcription start site region 152051
Pstpip2 18 77794545 to 77882007 87462 + protein coding gene proline-serine-threonine phosphatase-interacting protein 2
Tssr152052 18 77794557 to 77794610 53 + TSS region transcription start site region 152052
Tssr5382 18 77794698 to 77794719 21 + TSS region transcription start site region 5382
Tssr153961 18 77796214 to 77796226 12 - TSS region transcription start site region 153961
Tssr152053 18 77800188 to 77800196 8 + TSS region transcription start site region 152053
Gm23954 18 77806314 to 77806666 352 - unclassified non-coding RNA gene predicted gene, 23954
Tssr152054 18 77814353 to 77814366 13 + TSS region transcription start site region 152054
Tssr152055 18 77820355 to 77820381 26 + TSS region transcription start site region 152055
Tssr152056 18 77825379 to 77825401 22 + TSS region transcription start site region 152056
Tssr152057 18 77832971 to 77832976 5 + TSS region transcription start site region 152057
Tssr152058 18 77835179 to 77835190 11 + TSS region transcription start site region 152058
Tssr152059 18 77847489 to 77847498 9 + TSS region transcription start site region 152059
Tssr152060 18 77870230 to 77870260 30 + TSS region transcription start site region 152060
Tssr152061 18 77870266 to 77870306 40 + TSS region transcription start site region 152061
Tssr152062 18 77875336 to 77875373 37 + TSS region transcription start site region 152062
Tssr152063 18 77875399 to 77875408 9 + TSS region transcription start site region 152063
Tssr152064 18 77879496 to 77879524 28 + TSS region transcription start site region 152064
Tssr152065 18 77879531 to 77879541 10 + TSS region transcription start site region 152065
Tssr152066 18 77882188 to 77882204 16 + TSS region transcription start site region 152066
Tssr152067 18 77882220 to 77882232 12 + TSS region transcription start site region 152067
Tssr152068 18 77882250 to 77882261 11 + TSS region transcription start site region 152068
Tssr152069 18 77882351 to 77882362 11 + TSS region transcription start site region 152069
Tssr152070 18 77882466 to 77882477 11 + TSS region transcription start site region 152070
Tssr152071 18 77882497 to 77882515 18 + TSS region transcription start site region 152071
Tssr152072 18 77882518 to 77882546 28 + TSS region transcription start site region 152072
Tssr152073 18 77882551 to 77882564 13 + TSS region transcription start site region 152073
Tssr152074 18 77882580 to 77882587 7 + TSS region transcription start site region 152074
Tssr152075 18 77882600 to 77882616 16 + TSS region transcription start site region 152075
Cpgi10283 18 77938155 to 77938846 691 CpG island CpG island 10283
Tssr152076 18 77938421 to 77938451 30 + TSS region transcription start site region 152076
Tssr152077 18 77938452 to 77938477 25 + TSS region transcription start site region 152077
Epg5 18 77938467 to 78035027 96560 + protein coding gene ectopic P-granules autophagy protein 5 homolog (C. elegans)
Tssr5383 18 77948839 to 77948864 25 + TSS region transcription start site region 5383