Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:75443464-77093479

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pgis1 18 53157950 to 76826598 23668648 QTL proteoglycan induced spondylitis 1
Ltpr8 18 63741832 to 76047170 12305338 QTL Leishmania tropica response 8
Par2 18 70229262 to 76619461 6390199 QTL pulmonary adenoma resistance 2
Ctif 18 75431224 to 75697696 266472 - protein coding gene CBP80/20-dependent translation initiation factor
2900040J22Rik 18 75469475 to 75470782 1307 unclassified gene RIKEN cDNA 2900040J22 gene
Cpgi10239 18 75471768 to 75471989 221 CpG island CpG island 10239
Tssr151976 18 75488405 to 75488454 49 + TSS region transcription start site region 151976
Cpgi10240 18 75502798 to 75503139 341 CpG island CpG island 10240
Gm10532 18 75514645 to 75522806 8161 + lincRNA gene predicted gene 10532
Tssr153920 18 75562194 to 75562202 8 - TSS region transcription start site region 153920
Tssr151977 18 75562758 to 75562768 10 + TSS region transcription start site region 151977
D18Mit154 18 75598944 to 75599091 147 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 154
Tssr153921 18 75666137 to 75666157 20 - TSS region transcription start site region 153921
Tssr153922 18 75666185 to 75666216 31 - TSS region transcription start site region 153922
Cpgi10241 18 75695317 to 75695692 375 CpG island CpG island 10241
Cpgi10242 18 75695976 to 75698187 2211 CpG island CpG island 10242
Tssr153923 18 75697427 to 75697453 26 - TSS region transcription start site region 153923
Tssr153924 18 75697506 to 75697522 16 - TSS region transcription start site region 153924
Tssr153925 18 75697530 to 75697583 53 - TSS region transcription start site region 153925
Tssr153926 18 75697612 to 75697626 14 - TSS region transcription start site region 153926
Tssr153927 18 75697633 to 75697638 5 - TSS region transcription start site region 153927
Tssr153928 18 75697639 to 75697697 58 - TSS region transcription start site region 153928
Tssr151978 18 75767064 to 75767072 8 + TSS region transcription start site region 151978
Gm20570 18 75767068 to 75767539 471 + pseudogene predicted gene, 20570
Tssr5375 18 75767161 to 75767169 8 + TSS region transcription start site region 5375
1700034B16Rik 18 75781031 to 75782301 1270 + lincRNA gene RIKEN cDNA 1700034B16 gene
Tssr5376 18 75791513 to 75791515 2 + TSS region transcription start site region 5376
D18Mit79 18 75809914 to 75810023 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 79
Gm33703 18 75816691 to 75819926 3235 - lncRNA gene predicted gene, 33703
Cpgi10243 18 75819182 to 75821473 2291 CpG island CpG island 10243
Tssr151979 18 75820174 to 75820210 36 + TSS region transcription start site region 151979
Zbtb7c 18 75820178 to 76148561 328383 + protein coding gene zinc finger and BTB domain containing 7C
Tssr151980 18 75820212 to 75820236 24 + TSS region transcription start site region 151980
D18Mit210 18 75843369 to 75843487 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 210
Tssr151981 18 75923651 to 75923658 7 + TSS region transcription start site region 151981
Tssr5377 18 75930397 to 75930401 4 + TSS region transcription start site region 5377
1700003O11Rik 18 76014210 to 76015676 1466 unclassified gene RIKEN cDNA 1700003O11 gene
Tssr153929 18 76015638 to 76015643 5 - TSS region transcription start site region 153929
Tssr153930 18 76015648 to 76015659 11 - TSS region transcription start site region 153930
Cpgi10244 18 76034746 to 76035352 606 CpG island CpG island 10244
Tssr151982 18 76035395 to 76035430 35 + TSS region transcription start site region 151982
Tssr153931 18 76044279 to 76044284 5 - TSS region transcription start site region 153931
Ltpr8a 18 76047021 to 76047170 149 QTL Leishmania tropica response 8a
D18Mit49 18 76047021 to 76047170 149 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 49
Ltpr8c 18 76047021 to 76047170 149 QTL Leishmania tropica response 8c
Lmr29 18 76047021 to 76047170 149 QTL leishmaniasis resistance 29
Cpgi10245 18 76059325 to 76059930 605 CpG island CpG island 10245
Tssr151983 18 76059464 to 76059501 37 + TSS region transcription start site region 151983
Tssr151984 18 76059507 to 76059522 15 + TSS region transcription start site region 151984
Cpgi10246 18 76060356 to 76060752 396 CpG island CpG island 10246
2900057B20Rik 18 76091557 to 76098471 6914 - lncRNA gene RIKEN cDNA 2900057B20 gene
Tssr151985 18 76111844 to 76111854 10 + TSS region transcription start site region 151985
Cpgi10247 18 76136852 to 76137290 438 CpG island CpG island 10247
Cpgi10248 18 76145606 to 76146569 963 CpG island CpG island 10248
Cpgi10249 18 76160822 to 76161432 610 CpG island CpG island 10249
Tssr151986 18 76165118 to 76165128 10 + TSS region transcription start site region 151986
Tssr151987 18 76165136 to 76165149 13 + TSS region transcription start site region 151987
Tssr151988 18 76165161 to 76165170 9 + TSS region transcription start site region 151988
Mir6358 18 76170552 to 76170652 100 + miRNA gene microRNA 6358
Cpgi10250 18 76200701 to 76200946 245 CpG island CpG island 10250
Gm9028 18 76223901 to 76226345 2444 - pseudogene predicted gene 9028
BC026513 18 76226702 to 76228857 2155 unclassified gene cDNA sequence BC026513
Gm41778 18 76234341 to 76236913 2572 - lncRNA gene predicted gene, 41778
Cpgi10251 18 76240837 to 76242638 1801 CpG island CpG island 10251
Tssr151989 18 76241303 to 76241314 11 + TSS region transcription start site region 151989
Tssr151990 18 76241332 to 76241362 30 + TSS region transcription start site region 151990
Tssr151991 18 76241420 to 76241464 44 + TSS region transcription start site region 151991
Smad2 18 76241580 to 76305731 64151 + protein coding gene SMAD family member 2
Tssr151992 18 76241660 to 76241741 81 + TSS region transcription start site region 151992
Tssr151993 18 76241892 to 76241959 67 + TSS region transcription start site region 151993
Tssr151994 18 76242135 to 76242160 25 + TSS region transcription start site region 151994
Tssr151995 18 76268217 to 76268222 5 + TSS region transcription start site region 151995
Tssr151996 18 76268438 to 76268455 17 + TSS region transcription start site region 151996
Tssr151997 18 76268464 to 76268479 15 + TSS region transcription start site region 151997
1110001M07Rik 18 76295970 to 76296929 959 unclassified gene RIKEN cDNA 1110001M07 gene
A230038B01Rik 18 76311889 to 76315254 3365 unclassified gene RIKEN cDNA A230038B01 gene
Tssr151998 18 76343055 to 76343062 7 + TSS region transcription start site region 151998
Cpgi10252 18 76378198 to 76379359 1161 CpG island CpG island 10252
Gm41779 18 76476827 to 76478631 1804 + lncRNA gene predicted gene, 41779
Cpgi10253 18 76543854 to 76544330 476 CpG island CpG island 10253
Gm31875 18 76553680 to 76555240 1560 - lncRNA gene predicted gene, 31875
Tssr153932 18 76555222 to 76555231 9 - TSS region transcription start site region 153932
Tssr151999 18 76595740 to 76595744 4 + TSS region transcription start site region 151999
Gm31933 18 76613896 to 76633066 19170 - lncRNA gene predicted gene, 31933
D18Mit162 18 76619361 to 76619461 100 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 162
Tssr153933 18 76632865 to 76632875 10 - TSS region transcription start site region 153933
Gm7273 18 76636806 to 76637348 542 + pseudogene predicted gene 7273
Cpgi10254 18 76653365 to 76653523 158 CpG island CpG island 10254
D18Dcr1 18 76727702 to 76727797 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 1
D18Mit48 18 76808128 to 76808295 167 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 48
D18Mit80 18 76826489 to 76826598 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 80
Pgia11 18 76826489 to 76826598 109 QTL proteoglycan induced arthritis 11
Cpgi10255 18 76844211 to 76844673 462 CpG island CpG island 10255
Cpgi10256 18 76846506 to 76847588 1082 CpG island CpG island 10256
D18Mit7 18 76847626 to 76847720 94 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 7
Sluc28 18 76847626 to 76847720 94 QTL susceptibility to lung cancer 28
Cpgi10257 18 76853077 to 76853432 355 CpG island CpG island 10257
Cpgi10258 18 76855812 to 76856471 659 CpG island CpG island 10258
Tssr152000 18 76856133 to 76856148 15 + TSS region transcription start site region 152000
Tssr152001 18 76856155 to 76856166 11 + TSS region transcription start site region 152001
Tssr152002 18 76856311 to 76856327 16 + TSS region transcription start site region 152002
Skor2 18 76856405 to 76900342 43937 + protein coding gene SKI family transcriptional corepressor 2
Cpgi10259 18 76856742 to 76857083 341 CpG island CpG island 10259
Cpgi10260 18 76858491 to 76861079 2588 CpG island CpG island 10260
Tssr152003 18 76860499 to 76860516 17 + TSS region transcription start site region 152003
Gm32058 18 76922903 to 76929938 7035 - lncRNA gene predicted gene, 32058
Cpgi10261 18 76925531 to 76926026 495 CpG island CpG island 10261
Cpgi10262 18 76929828 to 76930382 554 CpG island CpG island 10262
Tssr152004 18 76930021 to 76930101 80 + TSS region transcription start site region 152004
Ier3ip1 18 76930027 to 76941614 11587 + protein coding gene immediate early response 3 interacting protein 1
Tssr152005 18 76930482 to 76930484 2 + TSS region transcription start site region 152005
Cpgi10263 18 76943853 to 76944534 681 CpG island CpG island 10263
Tssr153934 18 76944063 to 76944080 17 - TSS region transcription start site region 153934
Hdhd2 18 76944079 to 76972171 28092 + protein coding gene haloacid dehalogenase-like hydrolase domain containing 2
Tssr152006 18 76944094 to 76944168 74 + TSS region transcription start site region 152006
Tssr152007 18 76944392 to 76944444 52 + TSS region transcription start site region 152007
Tssr152008 18 76949034 to 76949041 7 + TSS region transcription start site region 152008
Tssr152009 18 76954895 to 76954906 11 + TSS region transcription start site region 152009
B430105A11Rik 18 76974829 to 76976161 1332 unclassified gene RIKEN cDNA B430105A11 gene
Katnal2 18 76977148 to 77047308 70160 - protein coding gene katanin p60 subunit A-like 2
Tssr152010 18 77006732 to 77006735 3 + TSS region transcription start site region 152010
Tssr153935 18 77016581 to 77016592 11 - TSS region transcription start site region 153935
Tssr152011 18 77038375 to 77038387 12 + TSS region transcription start site region 152011
Tssr152012 18 77038405 to 77038422 17 + TSS region transcription start site region 152012
Tssr152013 18 77038561 to 77038597 36 + TSS region transcription start site region 152013
Tssr152014 18 77038878 to 77038895 17 + TSS region transcription start site region 152014
Tssr153936 18 77040199 to 77040209 10 - TSS region transcription start site region 153936
Cpgi10264 18 77046883 to 77047515 632 CpG island CpG island 10264
Tssr153937 18 77047268 to 77047279 11 - TSS region transcription start site region 153937
Tssr153938 18 77047282 to 77047313 31 - TSS region transcription start site region 153938
Tssr152015 18 77057427 to 77057429 2 + TSS region transcription start site region 152015
Gm41782 18 77060492 to 77061333 841 - lncRNA gene predicted gene, 41782
4930520E11Rik 18 77064093 to 77065219 1126 - lncRNA gene RIKEN cDNA 4930520E11 gene
Cpgi10265 18 77064777 to 77066009 1232 CpG island CpG island 10265
Tssr153939 18 77065038 to 77065069 31 - TSS region transcription start site region 153939
Tssr153940 18 77065072 to 77065119 47 - TSS region transcription start site region 153940
Tssr152016 18 77065195 to 77065250 55 + TSS region transcription start site region 152016
Pias2 18 77065208 to 77155708 90500 + protein coding gene protein inhibitor of activated STAT 2
Tssr152017 18 77065477 to 77065545 68 + TSS region transcription start site region 152017
Tssr5378 18 77065558 to 77065572 14 - TSS region transcription start site region 5378
Tssr152018 18 77065584 to 77065587 3 + TSS region transcription start site region 152018
Tssr152019 18 77065637 to 77065685 48 + TSS region transcription start site region 152019
Tssr152020 18 77065702 to 77065705 3 + TSS region transcription start site region 152020
Tssr152021 18 77070736 to 77070744 8 + TSS region transcription start site region 152021
Tssr152022 18 77070749 to 77070765 16 + TSS region transcription start site region 152022
Tssr152023 18 77082182 to 77082188 6 + TSS region transcription start site region 152023