Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:74694079-79222171

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445 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pgis1 18 53157950 to 76826598 23668648 QTL proteoglycan induced spondylitis 1
Ltpr8 18 63741832 to 76047170 12305338 QTL Leishmania tropica response 8
Par2 18 70229262 to 76619461 6390199 QTL pulmonary adenoma resistance 2
Myo5b 18 74442380 to 74772698 330318 + protein coding gene myosin VB
Tssr151927 18 74708008 to 74708043 35 + TSS region transcription start site region 151927
Tssr151928 18 74714737 to 74714752 15 + TSS region transcription start site region 151928
Tssr151929 18 74714765 to 74714774 9 + TSS region transcription start site region 151929
Tssr151930 18 74714783 to 74714796 13 + TSS region transcription start site region 151930
Tssr151931 18 74733692 to 74733703 11 + TSS region transcription start site region 151931
Tssr151932 18 74733711 to 74733720 9 + TSS region transcription start site region 151932
Tssr151933 18 74733735 to 74733824 89 + TSS region transcription start site region 151933
Tssr151934 18 74733834 to 74733854 20 + TSS region transcription start site region 151934
Tssr151935 18 74740111 to 74740146 35 + TSS region transcription start site region 151935
Tssr151936 18 74765075 to 74765076 1 + TSS region transcription start site region 151936
Gm41774 18 74777890 to 74778998 1108 - lncRNA gene predicted gene, 41774
Scarna17 18 74778394 to 74778455 61 - snoRNA gene small Cajal body-specific RNA 17
Cpgi10223 18 74778482 to 74779625 1143 CpG island CpG island 10223
Gm23119 18 74778561 to 74778700 139 - snoRNA gene predicted gene, 23119
Tssr153908 18 74778740 to 74778816 76 - TSS region transcription start site region 153908
Tssr151937 18 74779178 to 74779189 11 + TSS region transcription start site region 151937
Tssr151938 18 74779190 to 74779199 9 + TSS region transcription start site region 151938
Tssr151939 18 74779203 to 74779224 21 + TSS region transcription start site region 151939
Acaa2 18 74779212 to 74806207 26995 + protein coding gene acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)
Tssr151940 18 74787083 to 74787100 17 + TSS region transcription start site region 151940
Tssr151941 18 74787104 to 74787123 19 + TSS region transcription start site region 151941
Tssr151942 18 74787136 to 74787148 12 + TSS region transcription start site region 151942
Tssr151943 18 74792415 to 74792428 13 + TSS region transcription start site region 151943
Tssr151944 18 74796992 to 74797040 48 + TSS region transcription start site region 151944
Cpgi10224 18 74823271 to 74823510 239 CpG island CpG island 10224
D18Mit153 18 74857210 to 74857334 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 153
Mbmq1 18 74857210 to 74857334 124 QTL male body mass QTL 1
Gm24559 18 74906314 to 74906434 120 - snoRNA gene predicted gene, 24559
Rpl37a-ps2 18 74910097 to 74910443 346 - pseudogene ribosomal protein L37a, pseudogene 2
Gm25594 18 74910152 to 74910233 81 - miRNA gene predicted gene, 25594
Gm18786 18 74936312 to 74937269 957 + pseudogene predicted gene, 18786
Lipg 18 74939322 to 74961263 21941 - protein coding gene lipase, endothelial
Tssr153909 18 74958019 to 74958026 7 - TSS region transcription start site region 153909
Cpgi10225 18 74960643 to 74962569 1926 CpG island CpG island 10225
Tssr153910 18 74961252 to 74961268 16 - TSS region transcription start site region 153910
9030625G05Rik 18 74972764 to 74981547 8783 - lncRNA gene RIKEN cDNA 9030625G05 gene
Tssr153911 18 74981538 to 74981554 16 - TSS region transcription start site region 153911
Cpgi10226 18 74991129 to 74991368 239 CpG island CpG island 10226
Cpgi10227 18 75000368 to 75001071 703 CpG island CpG island 10227
Tssr151945 18 75000448 to 75000460 12 + TSS region transcription start site region 151945
Tssr151946 18 75000469 to 75000487 18 + TSS region transcription start site region 151946
Rpl17 18 75000477 to 75003381 2904 + protein coding gene ribosomal protein L17
Tssr151947 18 75000489 to 75000499 10 + TSS region transcription start site region 151947
Tssr151948 18 75000515 to 75000559 44 + TSS region transcription start site region 151948
Snord58b 18 75001068 to 75001122 54 + snoRNA gene small nucleolar RNA, C/D box 58B
Gm23301 18 75001455 to 75001519 64 + snoRNA gene predicted gene, 23301
Gm26202 18 75001880 to 75001944 64 + snoRNA gene predicted gene, 26202
Tssr151949 18 75001881 to 75001883 2 + TSS region transcription start site region 151949
Cpgi10228 18 75005601 to 75006251 650 CpG island CpG island 10228
Tssr151950 18 75005839 to 75005945 106 + TSS region transcription start site region 151950
BC031181 18 75005900 to 75009933 4033 + protein coding gene cDNA sequence BC031181
Cpgi10229 18 75018538 to 75019565 1027 CpG island CpG island 10229
Tssr151951 18 75018691 to 75018700 9 + TSS region transcription start site region 151951
Tssr151952 18 75018709 to 75018816 107 + TSS region transcription start site region 151952
Dym 18 75018772 to 75286966 268194 + protein coding gene dymeclin
Tssr151953 18 75018923 to 75018934 11 + TSS region transcription start site region 151953
Gm27781 18 75023856 to 75023947 91 + rRNA gene predicted gene, 27781
Tssr151954 18 75043099 to 75043116 17 + TSS region transcription start site region 151954
Tssr151955 18 75047293 to 75047314 21 + TSS region transcription start site region 151955
Tssr151956 18 75056868 to 75056885 17 + TSS region transcription start site region 151956
D18Mit187 18 75090362 to 75090479 117 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 187
Tssr151957 18 75106192 to 75106196 4 + TSS region transcription start site region 151957
Gm6870 18 75169673 to 75175093 5420 - pseudogene predicted gene 6870
Gm8807 18 75182218 to 75182709 491 - pseudogene predicted gene 8807
Tssr151958 18 75183842 to 75183865 23 + TSS region transcription start site region 151958
Tssr151959 18 75183869 to 75183883 14 + TSS region transcription start site region 151959
Tssr151960 18 75183888 to 75183897 9 + TSS region transcription start site region 151960
Tssr153912 18 75187340 to 75187369 29 - TSS region transcription start site region 153912
Gm46624 18 75188018 to 75196724 8706 - lncRNA gene predicted gene, 46624
Tssr151961 18 75245851 to 75245855 4 + TSS region transcription start site region 151961
Tssr153913 18 75278776 to 75278797 21 - TSS region transcription start site region 153913
Tssr151962 18 75278923 to 75278961 38 + TSS region transcription start site region 151962
Cpgi10230 18 75279312 to 75279523 211 CpG island CpG island 10230
Tssr151963 18 75279471 to 75279475 4 + TSS region transcription start site region 151963
2010010A06Rik 18 75288660 to 75297329 8669 - lncRNA gene RIKEN cDNA 2010010A06 gene
Tssr153914 18 75297283 to 75297294 11 - TSS region transcription start site region 153914
Tssr153915 18 75297315 to 75297328 13 - TSS region transcription start site region 153915
Tssr151964 18 75297588 to 75297594 6 + TSS region transcription start site region 151964
Cpgi10231 18 75307429 to 75307887 458 CpG island CpG island 10231
Cpgi10232 18 75342200 to 75343522 1322 CpG island CpG island 10232
Tssr153916 18 75342613 to 75342625 12 - TSS region transcription start site region 153916
Tssr5373 18 75360181 to 75360187 6 - TSS region transcription start site region 5373
Gm20544 18 75365332 to 75367088 1756 - lncRNA gene predicted gene 20544
Cpgi10233 18 75366324 to 75368168 1844 CpG island CpG island 10233
Tssr151965 18 75366643 to 75366668 25 + TSS region transcription start site region 151965
Tssr153917 18 75367070 to 75367095 25 - TSS region transcription start site region 153917
Tssr151966 18 75367355 to 75367373 18 + TSS region transcription start site region 151966
Tssr151967 18 75367376 to 75367401 25 + TSS region transcription start site region 151967
Tssr5374 18 75367420 to 75367424 4 + TSS region transcription start site region 5374
Smad7 18 75367529 to 75395935 28406 + protein coding gene SMAD family member 7
Tssr151968 18 75367556 to 75367561 5 + TSS region transcription start site region 151968
Tssr151969 18 75368031 to 75368035 4 + TSS region transcription start site region 151969
Tssr151970 18 75368156 to 75368189 33 + TSS region transcription start site region 151970
Tssr151971 18 75368512 to 75368516 4 + TSS region transcription start site region 151971
Cpgi10234 18 75368530 to 75369648 1118 CpG island CpG island 10234
Cpgi10235 18 75370196 to 75370891 695 CpG island CpG island 10235
Tssr151972 18 75370526 to 75370539 13 + TSS region transcription start site region 151972
Tssr151973 18 75370572 to 75370581 9 + TSS region transcription start site region 151973
Tssr153918 18 75377543 to 75377548 5 - TSS region transcription start site region 153918
Tssr153919 18 75378251 to 75378256 5 - TSS region transcription start site region 153919
D18Mit142 18 75388953 to 75389072 119 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 142
Tssr151974 18 75394549 to 75394553 4 + TSS region transcription start site region 151974
Gm41776 18 75395773 to 75398668 2895 - lncRNA gene predicted gene, 41776
Cpgi10236 18 75415668 to 75415826 158 CpG island CpG island 10236
Cpgi10237 18 75424561 to 75424798 237 CpG island CpG island 10237
Tssr151975 18 75424679 to 75424687 8 + TSS region transcription start site region 151975
Ctif 18 75431224 to 75697696 266472 - protein coding gene CBP80/20-dependent translation initiation factor
Cpgi10238 18 75435031 to 75435245 214 CpG island CpG island 10238
2900040J22Rik 18 75469475 to 75470782 1307 unclassified gene RIKEN cDNA 2900040J22 gene
Cpgi10239 18 75471768 to 75471989 221 CpG island CpG island 10239
Tssr151976 18 75488405 to 75488454 49 + TSS region transcription start site region 151976
Cpgi10240 18 75502798 to 75503139 341 CpG island CpG island 10240
Gm10532 18 75514645 to 75522806 8161 + lincRNA gene predicted gene 10532
Tssr153920 18 75562194 to 75562202 8 - TSS region transcription start site region 153920
Tssr151977 18 75562758 to 75562768 10 + TSS region transcription start site region 151977
D18Mit154 18 75598944 to 75599091 147 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 154
Tssr153921 18 75666137 to 75666157 20 - TSS region transcription start site region 153921
Tssr153922 18 75666185 to 75666216 31 - TSS region transcription start site region 153922
Cpgi10241 18 75695317 to 75695692 375 CpG island CpG island 10241
Cpgi10242 18 75695976 to 75698187 2211 CpG island CpG island 10242
Tssr153923 18 75697427 to 75697453 26 - TSS region transcription start site region 153923
Tssr153924 18 75697506 to 75697522 16 - TSS region transcription start site region 153924
Tssr153925 18 75697530 to 75697583 53 - TSS region transcription start site region 153925
Tssr153926 18 75697612 to 75697626 14 - TSS region transcription start site region 153926
Tssr153927 18 75697633 to 75697638 5 - TSS region transcription start site region 153927
Tssr153928 18 75697639 to 75697697 58 - TSS region transcription start site region 153928
Tssr151978 18 75767064 to 75767072 8 + TSS region transcription start site region 151978
Gm20570 18 75767068 to 75767539 471 + pseudogene predicted gene, 20570
Tssr5375 18 75767161 to 75767169 8 + TSS region transcription start site region 5375
1700034B16Rik 18 75781031 to 75782301 1270 + lincRNA gene RIKEN cDNA 1700034B16 gene
Tssr5376 18 75791513 to 75791515 2 + TSS region transcription start site region 5376
D18Mit79 18 75809914 to 75810023 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 79
Gm33703 18 75816691 to 75819926 3235 - lncRNA gene predicted gene, 33703
Cpgi10243 18 75819182 to 75821473 2291 CpG island CpG island 10243
Tssr151979 18 75820174 to 75820210 36 + TSS region transcription start site region 151979
Zbtb7c 18 75820178 to 76148561 328383 + protein coding gene zinc finger and BTB domain containing 7C
Tssr151980 18 75820212 to 75820236 24 + TSS region transcription start site region 151980
D18Mit210 18 75843369 to 75843487 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 210
Tssr151981 18 75923651 to 75923658 7 + TSS region transcription start site region 151981
Tssr5377 18 75930397 to 75930401 4 + TSS region transcription start site region 5377
1700003O11Rik 18 76014210 to 76015676 1466 unclassified gene RIKEN cDNA 1700003O11 gene
Tssr153929 18 76015638 to 76015643 5 - TSS region transcription start site region 153929
Tssr153930 18 76015648 to 76015659 11 - TSS region transcription start site region 153930
Cpgi10244 18 76034746 to 76035352 606 CpG island CpG island 10244
Tssr151982 18 76035395 to 76035430 35 + TSS region transcription start site region 151982
Tssr153931 18 76044279 to 76044284 5 - TSS region transcription start site region 153931
D18Mit49 18 76047021 to 76047170 149 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 49
Ltpr8c 18 76047021 to 76047170 149 QTL Leishmania tropica response 8c
Ltpr8a 18 76047021 to 76047170 149 QTL Leishmania tropica response 8a
Lmr29 18 76047021 to 76047170 149 QTL leishmaniasis resistance 29
Cpgi10245 18 76059325 to 76059930 605 CpG island CpG island 10245
Tssr151983 18 76059464 to 76059501 37 + TSS region transcription start site region 151983
Tssr151984 18 76059507 to 76059522 15 + TSS region transcription start site region 151984
Cpgi10246 18 76060356 to 76060752 396 CpG island CpG island 10246
2900057B20Rik 18 76091557 to 76098471 6914 - lncRNA gene RIKEN cDNA 2900057B20 gene
Tssr151985 18 76111844 to 76111854 10 + TSS region transcription start site region 151985
Cpgi10247 18 76136852 to 76137290 438 CpG island CpG island 10247
Cpgi10248 18 76145606 to 76146569 963 CpG island CpG island 10248
Cpgi10249 18 76160822 to 76161432 610 CpG island CpG island 10249
Tssr151986 18 76165118 to 76165128 10 + TSS region transcription start site region 151986
Tssr151987 18 76165136 to 76165149 13 + TSS region transcription start site region 151987
Tssr151988 18 76165161 to 76165170 9 + TSS region transcription start site region 151988
Mir6358 18 76170552 to 76170652 100 + miRNA gene microRNA 6358
Cpgi10250 18 76200701 to 76200946 245 CpG island CpG island 10250
Gm9028 18 76223901 to 76226345 2444 - pseudogene predicted gene 9028
BC026513 18 76226702 to 76228857 2155 unclassified gene cDNA sequence BC026513
Gm41778 18 76234341 to 76236913 2572 - lncRNA gene predicted gene, 41778
Cpgi10251 18 76240837 to 76242638 1801 CpG island CpG island 10251
Tssr151989 18 76241303 to 76241314 11 + TSS region transcription start site region 151989
Tssr151990 18 76241332 to 76241362 30 + TSS region transcription start site region 151990
Tssr151991 18 76241420 to 76241464 44 + TSS region transcription start site region 151991
Smad2 18 76241580 to 76305731 64151 + protein coding gene SMAD family member 2
Tssr151992 18 76241660 to 76241741 81 + TSS region transcription start site region 151992
Tssr151993 18 76241892 to 76241959 67 + TSS region transcription start site region 151993
Tssr151994 18 76242135 to 76242160 25 + TSS region transcription start site region 151994
Tssr151995 18 76268217 to 76268222 5 + TSS region transcription start site region 151995
Tssr151996 18 76268438 to 76268455 17 + TSS region transcription start site region 151996
Tssr151997 18 76268464 to 76268479 15 + TSS region transcription start site region 151997
1110001M07Rik 18 76295970 to 76296929 959 unclassified gene RIKEN cDNA 1110001M07 gene
A230038B01Rik 18 76311889 to 76315254 3365 unclassified gene RIKEN cDNA A230038B01 gene
Tssr151998 18 76343055 to 76343062 7 + TSS region transcription start site region 151998
Cpgi10252 18 76378198 to 76379359 1161 CpG island CpG island 10252
Gm41779 18 76476827 to 76478631 1804 + lncRNA gene predicted gene, 41779
Cpgi10253 18 76543854 to 76544330 476 CpG island CpG island 10253
Gm31875 18 76553680 to 76555240 1560 - lncRNA gene predicted gene, 31875
Tssr153932 18 76555222 to 76555231 9 - TSS region transcription start site region 153932
Tssr151999 18 76595740 to 76595744 4 + TSS region transcription start site region 151999
Gm31933 18 76613896 to 76633066 19170 - lncRNA gene predicted gene, 31933
D18Mit162 18 76619361 to 76619461 100 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 162
Tssr153933 18 76632865 to 76632875 10 - TSS region transcription start site region 153933
Gm7273 18 76636806 to 76637348 542 + pseudogene predicted gene 7273
Cpgi10254 18 76653365 to 76653523 158 CpG island CpG island 10254
D18Dcr1 18 76727702 to 76727797 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 1
D18Mit48 18 76808128 to 76808295 167 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 48
Pgia11 18 76826489 to 76826598 109 QTL proteoglycan induced arthritis 11
D18Mit80 18 76826489 to 76826598 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 80