Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:74042398-74842409

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Idd21.2 18 61139376 to 74429343 13289967 QTL insulin dependent diabetes susceptibility 21.2
Mapk4 18 73928486 to 74065120 136634 - protein coding gene mitogen-activated protein kinase 4
Cpgi10212 18 74063585 to 74065564 1979 CpG island CpG island 10212
Tssr153896 18 74064899 to 74064943 44 - TSS region transcription start site region 153896
Tssr153897 18 74064945 to 74064963 18 - TSS region transcription start site region 153897
Gm9925 18 74065102 to 74065584 482 + unclassified gene predicted gene 9925
Tssr153898 18 74065350 to 74065360 10 - TSS region transcription start site region 153898
Tssr153899 18 74065657 to 74065681 24 - TSS region transcription start site region 153899
Gm32801 18 74089439 to 74103187 13748 + lncRNA gene predicted gene, 32801
Ska1 18 74195299 to 74207818 12519 - protein coding gene spindle and kinetochore associated complex subunit 1
Cpgi10213 18 74207150 to 74207894 744 CpG island CpG island 10213
Tssr153900 18 74207702 to 74207721 19 - TSS region transcription start site region 153900
Tssr153901 18 74207736 to 74207759 23 - TSS region transcription start site region 153901
Tssr153902 18 74207771 to 74207790 19 - TSS region transcription start site region 153902
Tssr153903 18 74207814 to 74207823 9 - TSS region transcription start site region 153903
Tssr153904 18 74215696 to 74215699 3 - TSS region transcription start site region 153904
Cpgi10214 18 74215793 to 74216812 1019 CpG island CpG island 10214
Tssr153905 18 74215939 to 74215946 7 - TSS region transcription start site region 153905
Tssr151897 18 74216100 to 74216109 9 + TSS region transcription start site region 151897
Tssr151898 18 74216118 to 74216145 27 + TSS region transcription start site region 151898
Cxxc1 18 74216131 to 74221491 5360 + protein coding gene CXXC finger 1 (PHD domain)
Tssr151899 18 74216167 to 74216173 6 + TSS region transcription start site region 151899
Tssr151900 18 74216197 to 74216237 40 + TSS region transcription start site region 151900
Tssr151901 18 74216346 to 74216407 61 + TSS region transcription start site region 151901
Cpgi10215 18 74217112 to 74217305 193 CpG island CpG island 10215
Tssr151902 18 74220505 to 74220535 30 + TSS region transcription start site region 151902
Tssr151903 18 74230184 to 74230189 5 + TSS region transcription start site region 151903
Tssr151904 18 74240857 to 74240867 10 + TSS region transcription start site region 151904
Gm5690 18 74240858 to 74241552 694 + pseudogene predicted gene 5690
Mbd1 18 74267605 to 74282732 15127 + protein coding gene methyl-CpG binding domain protein 1
Cpgi10216 18 74267827 to 74268622 795 CpG island CpG island 10216
Tssr151905 18 74268179 to 74268208 29 + TSS region transcription start site region 151905
Tssr151906 18 74268212 to 74268227 15 + TSS region transcription start site region 151906
Tssr151907 18 74268231 to 74268246 15 + TSS region transcription start site region 151907
Tssr151908 18 74268251 to 74268337 86 + TSS region transcription start site region 151908
Cpgi10217 18 74275897 to 74276075 178 CpG island CpG island 10217
Tssr151909 18 74283098 to 74283131 33 + TSS region transcription start site region 151909
Cfap53 18 74283100 to 74359984 76884 + protein coding gene cilia and flagella associated protein 53
Tssr151910 18 74283137 to 74283153 16 + TSS region transcription start site region 151910
Tssr151911 18 74283154 to 74283173 19 + TSS region transcription start site region 151911
Tssr151912 18 74288379 to 74288394 15 + TSS region transcription start site region 151912
Cpgi10218 18 74294963 to 74295213 250 CpG island CpG island 10218
V125Dq14 18 74300000 to 74300000 0 QTL vitamin D active form serum level QTL 14
Gm14328 18 74303524 to 74303931 407 - pseudogene predicted gene 14328
Tssr153906 18 74303982 to 74303987 5 - TSS region transcription start site region 153906
Gm41773 18 74346486 to 74348123 1637 - lncRNA gene predicted gene, 41773
Tssr153907 18 74347601 to 74347630 29 - TSS region transcription start site region 153907
Gm8986 18 74400608 to 74401050 442 + pseudogene predicted gene 8986
Gm8987 18 74420823 to 74421528 705 - pseudogene predicted gene 8987
D18Mit8 18 74429267 to 74429343 76 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 8
Idd21.1 18 74429267 to 84126470 9697203 QTL insulin dependent diabetes susceptibility 21.1
Lbw6 18 74429267 to 74429343 76 QTL lupus NZB x NZW 6
Cpgi10219 18 74440861 to 74441016 155 CpG island CpG island 10219
Cpgi10220 18 74442005 to 74443313 1308 CpG island CpG island 10220
Tssr151913 18 74442352 to 74442364 12 + TSS region transcription start site region 151913
Myo5b 18 74442380 to 74772698 330318 + protein coding gene myosin VB
Tssr151914 18 74442398 to 74442409 11 + TSS region transcription start site region 151914
Tssr151915 18 74442424 to 74442436 12 + TSS region transcription start site region 151915
Tssr151916 18 74442463 to 74442479 16 + TSS region transcription start site region 151916
Tssr151917 18 74442500 to 74442532 32 + TSS region transcription start site region 151917
Tssr151918 18 74442551 to 74442631 80 + TSS region transcription start site region 151918
Tssr151919 18 74442654 to 74442664 10 + TSS region transcription start site region 151919
Cpgi10221 18 74443684 to 74444304 620 CpG island CpG island 10221
Cpgi10222 18 74444546 to 74444784 238 CpG island CpG island 10222
Tssr151920 18 74489260 to 74489264 4 + TSS region transcription start site region 151920
Tssr151921 18 74517194 to 74517200 6 + TSS region transcription start site region 151921
1700120E14Rik 18 74525140 to 74531124 5984 - antisense lncRNA gene RIKEN cDNA 1700120E14 gene
Tssr151922 18 74531233 to 74531250 17 + TSS region transcription start site region 151922
Tssr5372 18 74531255 to 74531260 5 + TSS region transcription start site region 5372
Gm33090 18 74622300 to 74625555 3255 - lncRNA gene predicted gene, 33090
Tssr151923 18 74625074 to 74625084 10 + TSS region transcription start site region 151923
Tssr151924 18 74625499 to 74625512 13 + TSS region transcription start site region 151924
Tssr151925 18 74625526 to 74625560 34 + TSS region transcription start site region 151925
Tssr151926 18 74625561 to 74625571 10 + TSS region transcription start site region 151926
Tssr151927 18 74708008 to 74708043 35 + TSS region transcription start site region 151927
Tssr151928 18 74714737 to 74714752 15 + TSS region transcription start site region 151928
Tssr151929 18 74714765 to 74714774 9 + TSS region transcription start site region 151929
Tssr151930 18 74714783 to 74714796 13 + TSS region transcription start site region 151930
Tssr151931 18 74733692 to 74733703 11 + TSS region transcription start site region 151931
Tssr151932 18 74733711 to 74733720 9 + TSS region transcription start site region 151932
Tssr151933 18 74733735 to 74733824 89 + TSS region transcription start site region 151933
Tssr151934 18 74733834 to 74733854 20 + TSS region transcription start site region 151934
Tssr151935 18 74740111 to 74740146 35 + TSS region transcription start site region 151935
Tssr151936 18 74765075 to 74765076 1 + TSS region transcription start site region 151936
Gm41774 18 74777890 to 74778998 1108 - lncRNA gene predicted gene, 41774
Scarna17 18 74778394 to 74778455 61 - snoRNA gene small Cajal body-specific RNA 17
Cpgi10223 18 74778482 to 74779625 1143 CpG island CpG island 10223
Gm23119 18 74778561 to 74778700 139 - snoRNA gene predicted gene, 23119
Tssr153908 18 74778740 to 74778816 76 - TSS region transcription start site region 153908
Tssr151937 18 74779178 to 74779189 11 + TSS region transcription start site region 151937
Tssr151938 18 74779190 to 74779199 9 + TSS region transcription start site region 151938
Tssr151939 18 74779203 to 74779224 21 + TSS region transcription start site region 151939
Acaa2 18 74779212 to 74806207 26995 + protein coding gene acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)
Tssr151940 18 74787083 to 74787100 17 + TSS region transcription start site region 151940
Tssr151941 18 74787104 to 74787123 19 + TSS region transcription start site region 151941
Tssr151942 18 74787136 to 74787148 12 + TSS region transcription start site region 151942
Tssr151943 18 74792415 to 74792428 13 + TSS region transcription start site region 151943
Tssr151944 18 74796992 to 74797040 48 + TSS region transcription start site region 151944
Cpgi10224 18 74823271 to 74823510 239 CpG island CpG island 10224