Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:73645847-74295865

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smad4 18 73639009 to 73703780 64771 - protein coding gene SMAD family member 4
D18Dev1 18 73649252 to 73649515 263 DNA segment DNA Segment, Chr 18, Devereux 1
Tssr153879 18 73662700 to 73662749 49 - TSS region transcription start site region 153879
4930578L24Rik 18 73701075 to 73705353 4278 + protein coding gene RIKEN cDNA 4930578L24 gene
Tssr153880 18 73701754 to 73701757 3 - TSS region transcription start site region 153880
Cpgi10205 18 73702830 to 73704337 1507 CpG island CpG island 10205
Tssr153881 18 73703739 to 73703806 67 - TSS region transcription start site region 153881
Gm32548 18 73711328 to 73717593 6265 + lncRNA gene predicted gene, 32548
Gm17943 18 73730764 to 73731433 669 + pseudogene predicted gene, 17943
Tssr153882 18 73734849 to 73734852 3 - TSS region transcription start site region 153882
Elac1 18 73735038 to 73754479 19441 - protein coding gene elaC ribonuclease Z 1
Cpgi10206 18 73753934 to 73755132 1198 CpG island CpG island 10206
Tssr151886 18 73754155 to 73754167 12 + TSS region transcription start site region 151886
Tssr5371 18 73754327 to 73754332 5 - TSS region transcription start site region 5371
Tssr153883 18 73754457 to 73754503 46 - TSS region transcription start site region 153883
Cpgi10207 18 73762306 to 73762716 410 CpG island CpG island 10207
Me2 18 73770040 to 73815392 45352 - protein coding gene malic enzyme 2, NAD(+)-dependent, mitochondrial
Tssr153884 18 73770507 to 73770510 3 - TSS region transcription start site region 153884
Cpgi10208 18 73814855 to 73816021 1166 CpG island CpG island 10208
Tssr153885 18 73815430 to 73815453 23 - TSS region transcription start site region 153885
Tssr153886 18 73815470 to 73815486 16 - TSS region transcription start site region 153886
Tssr153887 18 73815703 to 73815714 11 - TSS region transcription start site region 153887
Tssr153888 18 73815755 to 73815794 39 - TSS region transcription start site region 153888
Gm46631 18 73816197 to 73819183 2986 + lncRNA gene predicted gene, 46631
Tssr153889 18 73816503 to 73816543 40 - TSS region transcription start site region 153889
Tssr153890 18 73836843 to 73836847 4 - TSS region transcription start site region 153890
Gm32661 18 73849882 to 73884056 34174 - lncRNA gene predicted gene, 32661
Tssr151887 18 73859366 to 73859399 33 + TSS region transcription start site region 151887
Mro 18 73859385 to 73881333 21948 + protein coding gene maestro
Tssr151888 18 73863194 to 73863215 21 + TSS region transcription start site region 151888
Cpgi10209 18 73863526 to 73863891 365 CpG island CpG island 10209
Tssr151889 18 73863615 to 73863648 33 + TSS region transcription start site region 151889
Tssr151890 18 73863692 to 73863713 21 + TSS region transcription start site region 151890
Tssr151891 18 73869978 to 73869990 12 + TSS region transcription start site region 151891
Tssr151892 18 73878234 to 73878242 8 + TSS region transcription start site region 151892
Tssr151893 18 73878541 to 73878543 2 + TSS region transcription start site region 151893
Mapk4 18 73928486 to 74065120 136634 - protein coding gene mitogen-activated protein kinase 4
Tssr153891 18 73928681 to 73928695 14 - TSS region transcription start site region 153891
Cpgi10210 18 73930273 to 73931177 904 CpG island CpG island 10210
Tssr151894 18 73948314 to 73948325 11 + TSS region transcription start site region 151894
Tssr153892 18 73948877 to 73948883 6 - TSS region transcription start site region 153892
Tssr151895 18 73949348 to 73949356 8 + TSS region transcription start site region 151895
Tssr151896 18 73963598 to 73963603 5 + TSS region transcription start site region 151896
Cpgi10211 18 73970030 to 73970407 377 CpG island CpG island 10211
Tssr153893 18 73970847 to 73970865 18 - TSS region transcription start site region 153893
Tssr153894 18 73971298 to 73971321 23 - TSS region transcription start site region 153894
Tssr153895 18 73971447 to 73971487 40 - TSS region transcription start site region 153895
D730045A05Rik 18 74017907 to 74020088 2181 + lincRNA gene RIKEN cDNA D730045A05 gene
Cpgi10212 18 74063585 to 74065564 1979 CpG island CpG island 10212
Tssr153896 18 74064899 to 74064943 44 - TSS region transcription start site region 153896
Tssr153897 18 74064945 to 74064963 18 - TSS region transcription start site region 153897
Gm9925 18 74065102 to 74065584 482 + unclassified gene predicted gene 9925
Tssr153898 18 74065350 to 74065360 10 - TSS region transcription start site region 153898
Tssr153899 18 74065657 to 74065681 24 - TSS region transcription start site region 153899
Gm32801 18 74089439 to 74103187 13748 + lncRNA gene predicted gene, 32801
Ska1 18 74195299 to 74207818 12519 - protein coding gene spindle and kinetochore associated complex subunit 1
Cpgi10213 18 74207150 to 74207894 744 CpG island CpG island 10213
Tssr153900 18 74207702 to 74207721 19 - TSS region transcription start site region 153900
Tssr153901 18 74207736 to 74207759 23 - TSS region transcription start site region 153901
Tssr153902 18 74207771 to 74207790 19 - TSS region transcription start site region 153902
Tssr153903 18 74207814 to 74207823 9 - TSS region transcription start site region 153903
Tssr153904 18 74215696 to 74215699 3 - TSS region transcription start site region 153904
Cpgi10214 18 74215793 to 74216812 1019 CpG island CpG island 10214
Tssr153905 18 74215939 to 74215946 7 - TSS region transcription start site region 153905
Tssr151897 18 74216100 to 74216109 9 + TSS region transcription start site region 151897
Tssr151898 18 74216118 to 74216145 27 + TSS region transcription start site region 151898
Cxxc1 18 74216131 to 74221491 5360 + protein coding gene CXXC finger 1 (PHD domain)
Tssr151899 18 74216167 to 74216173 6 + TSS region transcription start site region 151899
Tssr151900 18 74216197 to 74216237 40 + TSS region transcription start site region 151900
Tssr151901 18 74216346 to 74216407 61 + TSS region transcription start site region 151901
Cpgi10215 18 74217112 to 74217305 193 CpG island CpG island 10215
Tssr151902 18 74220505 to 74220535 30 + TSS region transcription start site region 151902
Tssr151903 18 74230184 to 74230189 5 + TSS region transcription start site region 151903
Tssr151904 18 74240857 to 74240867 10 + TSS region transcription start site region 151904
Gm5690 18 74240858 to 74241552 694 + pseudogene predicted gene 5690
Mbd1 18 74267605 to 74282732 15127 + protein coding gene methyl-CpG binding domain protein 1
Cpgi10216 18 74267827 to 74268622 795 CpG island CpG island 10216
Tssr151905 18 74268179 to 74268208 29 + TSS region transcription start site region 151905
Tssr151906 18 74268212 to 74268227 15 + TSS region transcription start site region 151906
Tssr151907 18 74268231 to 74268246 15 + TSS region transcription start site region 151907
Tssr151908 18 74268251 to 74268337 86 + TSS region transcription start site region 151908
Cpgi10217 18 74275897 to 74276075 178 CpG island CpG island 10217
Tssr151909 18 74283098 to 74283131 33 + TSS region transcription start site region 151909
Cfap53 18 74283100 to 74359984 76884 + protein coding gene cilia and flagella associated protein 53
Tssr151910 18 74283137 to 74283153 16 + TSS region transcription start site region 151910
Tssr151911 18 74283154 to 74283173 19 + TSS region transcription start site region 151911
Tssr151912 18 74288379 to 74288394 15 + TSS region transcription start site region 151912
Cpgi10218 18 74294963 to 74295213 250 CpG island CpG island 10218