Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:73098100-75544984

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260 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Idd21.2 18 61139376 to 74429343 13289967 QTL insulin dependent diabetes susceptibility 21.2
Tssr153875 18 73179332 to 73179334 2 - TSS region transcription start site region 153875
Gm31960 18 73180410 to 73184544 4134 - lncRNA gene predicted gene, 31960
D18Mit211 18 73247953 to 73248079 126 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 211
Tssr153876 18 73251807 to 73251814 7 - TSS region transcription start site region 153876
Fgf23lq4 18 73300000 to 73300000 0 QTL FGF23 serum level QTL 4
V125Dq13 18 73300000 to 73300000 0 QTL vitamin D active form serum level QTL 13
Tssr5369 18 73301548 to 73301551 3 + TSS region transcription start site region 5369
Cpgi10201 18 73379433 to 73379628 195 CpG island CpG island 10201
Tssr5370 18 73382832 to 73382837 5 + TSS region transcription start site region 5370
Gm32022 18 73504781 to 73513888 9107 - lncRNA gene predicted gene, 32022
n-R5-8s1 18 73533403 to 73533550 147 - rRNA gene nuclear encoded rRNA 5.8S 1
Tssr151879 18 73551662 to 73551678 16 + TSS region transcription start site region 151879
Tssr151880 18 73551697 to 73551704 7 + TSS region transcription start site region 151880
Tssr151881 18 73556923 to 73556934 11 + TSS region transcription start site region 151881
Cpgi10202 18 73557893 to 73558109 216 CpG island CpG island 10202
Cpgi10203 18 73571957 to 73574194 2237 CpG island CpG island 10203
Tssr153877 18 73572276 to 73572314 38 - TSS region transcription start site region 153877
Tssr153878 18 73572345 to 73572360 15 - TSS region transcription start site region 153878
Tssr151882 18 73572697 to 73572712 15 + TSS region transcription start site region 151882
Tssr151883 18 73572755 to 73572836 81 + TSS region transcription start site region 151883
Tssr151884 18 73572842 to 73572882 40 + TSS region transcription start site region 151884
Mex3c 18 73573044 to 73592575 19531 + protein coding gene mex3 RNA binding family member C
Tssr151885 18 73573476 to 73573503 27 + TSS region transcription start site region 151885
Gm26438 18 73611516 to 73611622 106 + unclassified non-coding RNA gene predicted gene, 26438
Cpgi10204 18 73622734 to 73623755 1021 CpG island CpG island 10204
Gm22065 18 73624928 to 73625037 109 + miRNA gene predicted gene, 22065
Smad4 18 73639009 to 73703780 64771 - protein coding gene SMAD family member 4
D18Dev1 18 73649252 to 73649515 263 DNA segment DNA Segment, Chr 18, Devereux 1
Tssr153879 18 73662700 to 73662749 49 - TSS region transcription start site region 153879
4930578L24Rik 18 73701075 to 73705353 4278 + protein coding gene RIKEN cDNA 4930578L24 gene
Tssr153880 18 73701754 to 73701757 3 - TSS region transcription start site region 153880
Cpgi10205 18 73702830 to 73704337 1507 CpG island CpG island 10205
Tssr153881 18 73703739 to 73703806 67 - TSS region transcription start site region 153881
Gm32548 18 73711328 to 73717593 6265 + lncRNA gene predicted gene, 32548
Gm17943 18 73730764 to 73731433 669 + pseudogene predicted gene, 17943
Tssr153882 18 73734849 to 73734852 3 - TSS region transcription start site region 153882
Elac1 18 73735038 to 73754479 19441 - protein coding gene elaC ribonuclease Z 1
Cpgi10206 18 73753934 to 73755132 1198 CpG island CpG island 10206
Tssr151886 18 73754155 to 73754167 12 + TSS region transcription start site region 151886
Tssr5371 18 73754327 to 73754332 5 - TSS region transcription start site region 5371
Tssr153883 18 73754457 to 73754503 46 - TSS region transcription start site region 153883
Cpgi10207 18 73762306 to 73762716 410 CpG island CpG island 10207
Me2 18 73770040 to 73815392 45352 - protein coding gene malic enzyme 2, NAD(+)-dependent, mitochondrial
Tssr153884 18 73770507 to 73770510 3 - TSS region transcription start site region 153884
Cpgi10208 18 73814855 to 73816021 1166 CpG island CpG island 10208
Tssr153885 18 73815430 to 73815453 23 - TSS region transcription start site region 153885
Tssr153886 18 73815470 to 73815486 16 - TSS region transcription start site region 153886
Tssr153887 18 73815703 to 73815714 11 - TSS region transcription start site region 153887
Tssr153888 18 73815755 to 73815794 39 - TSS region transcription start site region 153888
Gm46631 18 73816197 to 73819183 2986 + lncRNA gene predicted gene, 46631
Tssr153889 18 73816503 to 73816543 40 - TSS region transcription start site region 153889
Tssr153890 18 73836843 to 73836847 4 - TSS region transcription start site region 153890
Gm32661 18 73849882 to 73884056 34174 - lncRNA gene predicted gene, 32661
Tssr151887 18 73859366 to 73859399 33 + TSS region transcription start site region 151887
Mro 18 73859385 to 73881333 21948 + protein coding gene maestro
Tssr151888 18 73863194 to 73863215 21 + TSS region transcription start site region 151888
Cpgi10209 18 73863526 to 73863891 365 CpG island CpG island 10209
Tssr151889 18 73863615 to 73863648 33 + TSS region transcription start site region 151889
Tssr151890 18 73863692 to 73863713 21 + TSS region transcription start site region 151890
Tssr151891 18 73869978 to 73869990 12 + TSS region transcription start site region 151891
Tssr151892 18 73878234 to 73878242 8 + TSS region transcription start site region 151892
Tssr151893 18 73878541 to 73878543 2 + TSS region transcription start site region 151893
Mapk4 18 73928486 to 74065120 136634 - protein coding gene mitogen-activated protein kinase 4
Tssr153891 18 73928681 to 73928695 14 - TSS region transcription start site region 153891
Cpgi10210 18 73930273 to 73931177 904 CpG island CpG island 10210
Tssr151894 18 73948314 to 73948325 11 + TSS region transcription start site region 151894
Tssr153892 18 73948877 to 73948883 6 - TSS region transcription start site region 153892
Tssr151895 18 73949348 to 73949356 8 + TSS region transcription start site region 151895
Tssr151896 18 73963598 to 73963603 5 + TSS region transcription start site region 151896
Cpgi10211 18 73970030 to 73970407 377 CpG island CpG island 10211
Tssr153893 18 73970847 to 73970865 18 - TSS region transcription start site region 153893
Tssr153894 18 73971298 to 73971321 23 - TSS region transcription start site region 153894
Tssr153895 18 73971447 to 73971487 40 - TSS region transcription start site region 153895
D730045A05Rik 18 74017907 to 74020088 2181 + lincRNA gene RIKEN cDNA D730045A05 gene
Cpgi10212 18 74063585 to 74065564 1979 CpG island CpG island 10212
Tssr153896 18 74064899 to 74064943 44 - TSS region transcription start site region 153896
Tssr153897 18 74064945 to 74064963 18 - TSS region transcription start site region 153897
Gm9925 18 74065102 to 74065584 482 + unclassified gene predicted gene 9925
Tssr153898 18 74065350 to 74065360 10 - TSS region transcription start site region 153898
Tssr153899 18 74065657 to 74065681 24 - TSS region transcription start site region 153899
Gm32801 18 74089439 to 74103187 13748 + lncRNA gene predicted gene, 32801
Ska1 18 74195299 to 74207818 12519 - protein coding gene spindle and kinetochore associated complex subunit 1
Cpgi10213 18 74207150 to 74207894 744 CpG island CpG island 10213
Tssr153900 18 74207702 to 74207721 19 - TSS region transcription start site region 153900
Tssr153901 18 74207736 to 74207759 23 - TSS region transcription start site region 153901
Tssr153902 18 74207771 to 74207790 19 - TSS region transcription start site region 153902
Tssr153903 18 74207814 to 74207823 9 - TSS region transcription start site region 153903
Tssr153904 18 74215696 to 74215699 3 - TSS region transcription start site region 153904
Cpgi10214 18 74215793 to 74216812 1019 CpG island CpG island 10214
Tssr153905 18 74215939 to 74215946 7 - TSS region transcription start site region 153905
Tssr151897 18 74216100 to 74216109 9 + TSS region transcription start site region 151897
Tssr151898 18 74216118 to 74216145 27 + TSS region transcription start site region 151898
Cxxc1 18 74216131 to 74221491 5360 + protein coding gene CXXC finger 1 (PHD domain)
Tssr151899 18 74216167 to 74216173 6 + TSS region transcription start site region 151899
Tssr151900 18 74216197 to 74216237 40 + TSS region transcription start site region 151900
Tssr151901 18 74216346 to 74216407 61 + TSS region transcription start site region 151901
Cpgi10215 18 74217112 to 74217305 193 CpG island CpG island 10215
Tssr151902 18 74220505 to 74220535 30 + TSS region transcription start site region 151902
Tssr151903 18 74230184 to 74230189 5 + TSS region transcription start site region 151903
Tssr151904 18 74240857 to 74240867 10 + TSS region transcription start site region 151904
Gm5690 18 74240858 to 74241552 694 + pseudogene predicted gene 5690
Mbd1 18 74267605 to 74282732 15127 + protein coding gene methyl-CpG binding domain protein 1
Cpgi10216 18 74267827 to 74268622 795 CpG island CpG island 10216
Tssr151905 18 74268179 to 74268208 29 + TSS region transcription start site region 151905
Tssr151906 18 74268212 to 74268227 15 + TSS region transcription start site region 151906
Tssr151907 18 74268231 to 74268246 15 + TSS region transcription start site region 151907
Tssr151908 18 74268251 to 74268337 86 + TSS region transcription start site region 151908
Cpgi10217 18 74275897 to 74276075 178 CpG island CpG island 10217
Tssr151909 18 74283098 to 74283131 33 + TSS region transcription start site region 151909
Cfap53 18 74283100 to 74359984 76884 + protein coding gene cilia and flagella associated protein 53
Tssr151910 18 74283137 to 74283153 16 + TSS region transcription start site region 151910
Tssr151911 18 74283154 to 74283173 19 + TSS region transcription start site region 151911
Tssr151912 18 74288379 to 74288394 15 + TSS region transcription start site region 151912
Cpgi10218 18 74294963 to 74295213 250 CpG island CpG island 10218
V125Dq14 18 74300000 to 74300000 0 QTL vitamin D active form serum level QTL 14
Gm14328 18 74303524 to 74303931 407 - pseudogene predicted gene 14328
Tssr153906 18 74303982 to 74303987 5 - TSS region transcription start site region 153906
Gm41773 18 74346486 to 74348123 1637 - lncRNA gene predicted gene, 41773
Tssr153907 18 74347601 to 74347630 29 - TSS region transcription start site region 153907
Gm8986 18 74400608 to 74401050 442 + pseudogene predicted gene 8986
Gm8987 18 74420823 to 74421528 705 - pseudogene predicted gene 8987
Idd21.1 18 74429267 to 84126470 9697203 QTL insulin dependent diabetes susceptibility 21.1
Lbw6 18 74429267 to 74429343 76 QTL lupus NZB x NZW 6
D18Mit8 18 74429267 to 74429343 76 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 8
Cpgi10219 18 74440861 to 74441016 155 CpG island CpG island 10219
Cpgi10220 18 74442005 to 74443313 1308 CpG island CpG island 10220
Tssr151913 18 74442352 to 74442364 12 + TSS region transcription start site region 151913
Myo5b 18 74442380 to 74772698 330318 + protein coding gene myosin VB
Tssr151914 18 74442398 to 74442409 11 + TSS region transcription start site region 151914
Tssr151915 18 74442424 to 74442436 12 + TSS region transcription start site region 151915
Tssr151916 18 74442463 to 74442479 16 + TSS region transcription start site region 151916
Tssr151917 18 74442500 to 74442532 32 + TSS region transcription start site region 151917
Tssr151918 18 74442551 to 74442631 80 + TSS region transcription start site region 151918
Tssr151919 18 74442654 to 74442664 10 + TSS region transcription start site region 151919
Cpgi10221 18 74443684 to 74444304 620 CpG island CpG island 10221
Cpgi10222 18 74444546 to 74444784 238 CpG island CpG island 10222
Tssr151920 18 74489260 to 74489264 4 + TSS region transcription start site region 151920
Tssr151921 18 74517194 to 74517200 6 + TSS region transcription start site region 151921
1700120E14Rik 18 74525140 to 74531124 5984 - antisense lncRNA gene RIKEN cDNA 1700120E14 gene
Tssr151922 18 74531233 to 74531250 17 + TSS region transcription start site region 151922
Tssr5372 18 74531255 to 74531260 5 + TSS region transcription start site region 5372
Gm33090 18 74622300 to 74625555 3255 - lncRNA gene predicted gene, 33090
Tssr151923 18 74625074 to 74625084 10 + TSS region transcription start site region 151923
Tssr151924 18 74625499 to 74625512 13 + TSS region transcription start site region 151924
Tssr151925 18 74625526 to 74625560 34 + TSS region transcription start site region 151925
Tssr151926 18 74625561 to 74625571 10 + TSS region transcription start site region 151926
Tssr151927 18 74708008 to 74708043 35 + TSS region transcription start site region 151927
Tssr151928 18 74714737 to 74714752 15 + TSS region transcription start site region 151928
Tssr151929 18 74714765 to 74714774 9 + TSS region transcription start site region 151929
Tssr151930 18 74714783 to 74714796 13 + TSS region transcription start site region 151930
Tssr151931 18 74733692 to 74733703 11 + TSS region transcription start site region 151931
Tssr151932 18 74733711 to 74733720 9 + TSS region transcription start site region 151932
Tssr151933 18 74733735 to 74733824 89 + TSS region transcription start site region 151933
Tssr151934 18 74733834 to 74733854 20 + TSS region transcription start site region 151934
Tssr151935 18 74740111 to 74740146 35 + TSS region transcription start site region 151935
Tssr151936 18 74765075 to 74765076 1 + TSS region transcription start site region 151936
Gm41774 18 74777890 to 74778998 1108 - lncRNA gene predicted gene, 41774
Scarna17 18 74778394 to 74778455 61 - snoRNA gene small Cajal body-specific RNA 17
Cpgi10223 18 74778482 to 74779625 1143 CpG island CpG island 10223
Gm23119 18 74778561 to 74778700 139 - snoRNA gene predicted gene, 23119
Tssr153908 18 74778740 to 74778816 76 - TSS region transcription start site region 153908
Tssr151937 18 74779178 to 74779189 11 + TSS region transcription start site region 151937
Tssr151938 18 74779190 to 74779199 9 + TSS region transcription start site region 151938
Tssr151939 18 74779203 to 74779224 21 + TSS region transcription start site region 151939
Acaa2 18 74779212 to 74806207 26995 + protein coding gene acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)
Tssr151940 18 74787083 to 74787100 17 + TSS region transcription start site region 151940
Tssr151941 18 74787104 to 74787123 19 + TSS region transcription start site region 151941
Tssr151942 18 74787136 to 74787148 12 + TSS region transcription start site region 151942
Tssr151943 18 74792415 to 74792428 13 + TSS region transcription start site region 151943
Tssr151944 18 74796992 to 74797040 48 + TSS region transcription start site region 151944
Cpgi10224 18 74823271 to 74823510 239 CpG island CpG island 10224
Mbmq1 18 74857210 to 74857334 124 QTL male body mass QTL 1
D18Mit153 18 74857210 to 74857334 124 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 153
Gm24559 18 74906314 to 74906434 120 - snoRNA gene predicted gene, 24559
Rpl37a-ps2 18 74910097 to 74910443 346 - pseudogene ribosomal protein L37a, pseudogene 2
Gm25594 18 74910152 to 74910233 81 - miRNA gene predicted gene, 25594
Gm18786 18 74936312 to 74937269 957 + pseudogene predicted gene, 18786
Lipg 18 74939322 to 74961263 21941 - protein coding gene lipase, endothelial
Tssr153909 18 74958019 to 74958026 7 - TSS region transcription start site region 153909
Cpgi10225 18 74960643 to 74962569 1926 CpG island CpG island 10225
Tssr153910 18 74961252 to 74961268 16 - TSS region transcription start site region 153910
9030625G05Rik 18 74972764 to 74981547 8783 - lncRNA gene RIKEN cDNA 9030625G05 gene
Tssr153911 18 74981538 to 74981554 16 - TSS region transcription start site region 153911
Cpgi10226 18 74991129 to 74991368 239 CpG island CpG island 10226
Cpgi10227 18 75000368 to 75001071 703 CpG island CpG island 10227
Tssr151945 18 75000448 to 75000460 12 + TSS region transcription start site region 151945
Tssr151946 18 75000469 to 75000487 18 + TSS region transcription start site region 151946
Rpl17 18 75000477 to 75003381 2904 + protein coding gene ribosomal protein L17
Tssr151947 18 75000489 to 75000499 10 + TSS region transcription start site region 151947
Tssr151948 18 75000515 to 75000559 44 + TSS region transcription start site region 151948
Snord58b 18 75001068 to 75001122 54 + snoRNA gene small nucleolar RNA, C/D box 58B
Gm23301 18 75001455 to 75001519 64 + snoRNA gene predicted gene, 23301
Gm26202 18 75001880 to 75001944 64 + snoRNA gene predicted gene, 26202
Tssr151949 18 75001881 to 75001883 2 + TSS region transcription start site region 151949
Cpgi10228 18 75005601 to 75006251 650 CpG island CpG island 10228
Tssr151950 18 75005839 to 75005945 106 + TSS region transcription start site region 151950
BC031181 18 75005900 to 75009933 4033 + protein coding gene cDNA sequence BC031181
Cpgi10229 18 75018538 to 75019565 1027 CpG island CpG island 10229
Tssr151951 18 75018691 to 75018700 9 + TSS region transcription start site region 151951