Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:69365123-70824833

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcf4 18 69344488 to 69687967 343479 + protein coding gene transcription factor 4
Tssr151808 18 69365369 to 69365374 5 + TSS region transcription start site region 151808
Tssr151809 18 69382241 to 69382251 10 + TSS region transcription start site region 151809
Tssr151810 18 69404084 to 69404089 5 + TSS region transcription start site region 151810
Tssr153820 18 69415648 to 69415653 5 - TSS region transcription start site region 153820
Tssr151811 18 69438033 to 69438037 4 + TSS region transcription start site region 151811
Tssr151812 18 69475598 to 69475601 3 + TSS region transcription start site region 151812
Tssr151813 18 69500901 to 69500972 71 + TSS region transcription start site region 151813
Tssr151814 18 69519593 to 69519610 17 + TSS region transcription start site region 151814
Tssr151815 18 69519683 to 69519700 17 + TSS region transcription start site region 151815
Tssr151816 18 69519780 to 69519791 11 + TSS region transcription start site region 151816
Tssr151817 18 69519797 to 69519807 10 + TSS region transcription start site region 151817
Tssr151818 18 69519810 to 69519824 14 + TSS region transcription start site region 151818
Tssr151819 18 69519829 to 69519835 6 + TSS region transcription start site region 151819
Tssr151820 18 69519839 to 69519846 7 + TSS region transcription start site region 151820
Tssr151821 18 69519915 to 69519924 9 + TSS region transcription start site region 151821
Tssr151822 18 69521306 to 69521353 47 + TSS region transcription start site region 151822
Tssr151823 18 69521355 to 69521360 5 + TSS region transcription start site region 151823
Tssr151824 18 69521366 to 69521378 12 + TSS region transcription start site region 151824
Tssr151825 18 69521574 to 69521583 9 + TSS region transcription start site region 151825
Tssr151826 18 69521759 to 69521770 11 + TSS region transcription start site region 151826
Tssr151827 18 69521785 to 69521802 17 + TSS region transcription start site region 151827
Tssr151828 18 69521829 to 69521860 31 + TSS region transcription start site region 151828
Tssr151829 18 69521921 to 69521925 4 + TSS region transcription start site region 151829
Tssr151830 18 69522155 to 69522190 35 + TSS region transcription start site region 151830
Tssr151831 18 69550389 to 69550397 8 + TSS region transcription start site region 151831
Gm24845 18 69551963 to 69552071 108 + rRNA gene predicted gene, 24845
4732423E21Rik 18 69567592 to 69570761 3169 unclassified gene RIKEN cDNA 4732423E21 gene
Tssr151832 18 69575368 to 69575370 2 + TSS region transcription start site region 151832
Cpgi10191 18 69576366 to 69576647 281 CpG island CpG island 10191
9630026C02Rik 18 69579374 to 69583846 4472 unclassified gene RIKEN cDNA 9630026C02 gene
Cpgi10192 18 69592349 to 69592818 469 CpG island CpG island 10192
Tssr151833 18 69592801 to 69592849 48 + TSS region transcription start site region 151833
Tssr151834 18 69592944 to 69592953 9 + TSS region transcription start site region 151834
Tssr151835 18 69592954 to 69592971 17 + TSS region transcription start site region 151835
Tssr151836 18 69592984 to 69593011 27 + TSS region transcription start site region 151836
Tssr151837 18 69593210 to 69593221 11 + TSS region transcription start site region 151837
Cpgi10193 18 69593218 to 69593613 395 CpG island CpG island 10193
Tssr151838 18 69593258 to 69593274 16 + TSS region transcription start site region 151838
Tssr153821 18 69593292 to 69593342 50 - TSS region transcription start site region 153821
Tssr151839 18 69593361 to 69593450 89 + TSS region transcription start site region 151839
Tssr151840 18 69593454 to 69593485 31 + TSS region transcription start site region 151840
Tssr151841 18 69593491 to 69593505 14 + TSS region transcription start site region 151841
Tssr151842 18 69593514 to 69593532 18 + TSS region transcription start site region 151842
Tssr151843 18 69593546 to 69593557 11 + TSS region transcription start site region 151843
Tssr151844 18 69593583 to 69593607 24 + TSS region transcription start site region 151844
Tssr151845 18 69593624 to 69593638 14 + TSS region transcription start site region 151845
Tssr151846 18 69612635 to 69612644 9 + TSS region transcription start site region 151846
Tssr151847 18 69636889 to 69636910 21 + TSS region transcription start site region 151847
Gm31439 18 69636971 to 69654954 17983 - lncRNA gene predicted gene, 31439
Tssr151848 18 69638067 to 69638078 11 + TSS region transcription start site region 151848
Tssr151849 18 69645327 to 69645331 4 + TSS region transcription start site region 151849
Tssr151850 18 69649576 to 69649579 3 + TSS region transcription start site region 151850
Sicd4 18 69672205 to 85496018 15823813 QTL seizure-induced cell death 4
D18Mit33 18 69672205 to 69672345 140 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 33
Heal9 18 69672205 to 69672345 140 QTL wound healing/regeneration 9
Tssr151851 18 69677932 to 69677972 40 + TSS region transcription start site region 151851
Tssr151852 18 69679883 to 69679890 7 + TSS region transcription start site region 151852
Tssr151853 18 69683073 to 69683090 17 + TSS region transcription start site region 151853
Tssr151854 18 69683097 to 69683152 55 + TSS region transcription start site region 151854
Tssr151855 18 69684144 to 69684166 22 + TSS region transcription start site region 151855
Tssr151856 18 69686732 to 69686742 10 + TSS region transcription start site region 151856
Tssr151857 18 69686772 to 69686784 12 + TSS region transcription start site region 151857
Gm31502 18 69758902 to 69779782 20880 - lncRNA gene predicted gene, 31502
Gm22508 18 69777936 to 69778045 109 - unclassified non-coding RNA gene predicted gene, 22508
Tssr153822 18 69779722 to 69779771 49 - TSS region transcription start site region 153822
Gm31564 18 69795956 to 69798108 2152 + lncRNA gene predicted gene, 31564
Cpgi10194 18 69833551 to 69833738 187 CpG island CpG island 10194
Gm36175 18 69887669 to 69896410 8741 + pseudogene predicted gene, 36175
Tssr5364 18 69923477 to 69923484 7 - TSS region transcription start site region 5364
Ccdc68 18 69925426 to 69969484 44058 + protein coding gene coiled-coil domain containing 68
Tssr151858 18 69925479 to 69925537 58 + TSS region transcription start site region 151858
Tssr151859 18 69925542 to 69925571 29 + TSS region transcription start site region 151859
1700061H18Rik 18 69943320 to 69969609 26289 - antisense lncRNA gene RIKEN cDNA 1700061H18 gene
Gm18528 18 69952901 to 69953891 990 - pseudogene predicted gene, 18528
4930448D08Rik 18 69969677 to 69972366 2689 + antisense lncRNA gene RIKEN cDNA 4930448D08 gene
Rab27b 18 69979131 to 70141605 162474 - protein coding gene RAB27B, member RAS oncogene family
Cpgi10195 18 70052950 to 70053469 519 CpG island CpG island 10195
Tssr153823 18 70053268 to 70053292 24 - TSS region transcription start site region 153823
Tssr153824 18 70053297 to 70053331 34 - TSS region transcription start site region 153824
Tssr153825 18 70053334 to 70053427 93 - TSS region transcription start site region 153825
Tssr153826 18 70053432 to 70053443 11 - TSS region transcription start site region 153826
Gm41770 18 70055123 to 70134833 79710 + lncRNA gene predicted gene, 41770
Tssr153827 18 70141568 to 70141622 54 - TSS region transcription start site region 153827
Par2 18 70229262 to 76619461 6390199 QTL pulmonary adenoma resistance 2
D18Mit103 18 70229262 to 70229376 114 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 103
Dynap 18 70240429 to 70244584 4155 - protein coding gene dynactin associated protein
Tssr153828 18 70244373 to 70244378 5 - TSS region transcription start site region 153828
Tssr153829 18 70244389 to 70244395 6 - TSS region transcription start site region 153829
Tssr153830 18 70244418 to 70244428 10 - TSS region transcription start site region 153830
Tssr153831 18 70244480 to 70244496 16 - TSS region transcription start site region 153831
Tssr153832 18 70244560 to 70244565 5 - TSS region transcription start site region 153832
Tssr153833 18 70244590 to 70244601 11 - TSS region transcription start site region 153833
Tssr153834 18 70244685 to 70244696 11 - TSS region transcription start site region 153834
Gm36255 18 70267410 to 70277194 9784 - pseudogene predicted gene, 36255
Tssr153835 18 70276206 to 70276213 7 - TSS region transcription start site region 153835
Tssr5365 18 70390788 to 70390793 5 + TSS region transcription start site region 5365
Gm31620 18 70412972 to 70421048 8076 - lncRNA gene predicted gene, 31620
Gm45879 18 70432355 to 70433856 1501 - pseudogene predicted gene 45879
4930503L19Rik 18 70452210 to 70472504 20294 - protein coding gene RIKEN cDNA 4930503L19 gene
Tssr153836 18 70462841 to 70462849 8 - TSS region transcription start site region 153836
Cpgi10196 18 70471748 to 70472948 1200 CpG island CpG island 10196
Tssr153837 18 70472339 to 70472408 69 - TSS region transcription start site region 153837
Tssr151860 18 70472406 to 70472455 49 + TSS region transcription start site region 151860
Tssr153838 18 70472429 to 70472520 91 - TSS region transcription start site region 153838
Stard6 18 70472454 to 70501066 28612 + protein coding gene StAR-related lipid transfer (START) domain containing 6
Tssr151861 18 70472457 to 70472471 14 + TSS region transcription start site region 151861
Tssr5366 18 70472554 to 70472557 3 + TSS region transcription start site region 5366
Tssr151862 18 70472559 to 70472575 16 + TSS region transcription start site region 151862
Tssr151863 18 70472621 to 70472635 14 + TSS region transcription start site region 151863
Tssr151864 18 70472660 to 70472675 15 + TSS region transcription start site region 151864
Tssr151865 18 70474970 to 70474972 2 + TSS region transcription start site region 151865
Poli 18 70508680 to 70530620 21940 - protein coding gene polymerase (DNA directed), iota
Mir6357 18 70516786 to 70516889 103 + miRNA gene microRNA 6357
Tssr153839 18 70528609 to 70528614 5 - TSS region transcription start site region 153839
Cpgi10197 18 70529806 to 70530489 683 CpG island CpG island 10197
Tssr153840 18 70530219 to 70530284 65 - TSS region transcription start site region 153840
Tssr153841 18 70530313 to 70530326 13 - TSS region transcription start site region 153841
Tssr151866 18 70531167 to 70531175 8 + TSS region transcription start site region 151866
Gm31671 18 70559728 to 70568158 8430 - lncRNA gene predicted gene, 31671
Cpgi10198 18 70567963 to 70569269 1306 CpG island CpG island 10198
Tssr151867 18 70568268 to 70568398 130 + TSS region transcription start site region 151867
Mbd2 18 70568269 to 70626131 57862 + protein coding gene methyl-CpG binding domain protein 2
Tssr151868 18 70568426 to 70568506 80 + TSS region transcription start site region 151868
Tssr151869 18 70568861 to 70568898 37 + TSS region transcription start site region 151869
Tssr151870 18 70568899 to 70568942 43 + TSS region transcription start site region 151870
Tssr151871 18 70580698 to 70580733 35 + TSS region transcription start site region 151871
Tssr151872 18 70581060 to 70581065 5 + TSS region transcription start site region 151872
C230075M21Rik 18 70603551 to 70607590 4039 unclassified non-coding RNA gene RIKEN cDNA C230075M21 gene
Tssr151873 18 70607201 to 70607222 21 + TSS region transcription start site region 151873
Tssr151874 18 70621683 to 70621687 4 + TSS region transcription start site region 151874
Tssr151875 18 70622593 to 70622623 30 + TSS region transcription start site region 151875
Tssr151876 18 70622625 to 70622645 20 + TSS region transcription start site region 151876
Gm8934 18 70647092 to 70648082 990 - pseudogene predicted gene 8934
Gm41772 18 70648955 to 70650672 1717 + lncRNA gene predicted gene, 41772
Tssr5367 18 70753491 to 70753494 3 - TSS region transcription start site region 5367
Gm18963 18 70769480 to 70770081 601 + pseudogene predicted gene, 18963
Gm21046 18 70781887 to 70782942 1055 + pseudogene predicted gene, 21046