Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:67447485-69437708

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Thcr 18 44997537 to 68645706 23648169 QTL T helper cell response
Radpf4 18 52833084 to 68645706 15812622 QTL radiation pulmonary fibrosis 4
Pwgrq8 18 57888327 to 69216071 11327744 QTL pre-weaning growth rate QTL 8
Ett1 18 66541078 to 68535397 1994319 QTL experimentally induced testicular teratoma 1
Afg3l2 18 67404760 to 67449136 44376 - protein coding gene AFG3-like AAA ATPase 2
Cpgi10176 18 67448414 to 67449591 1177 CpG island CpG island 10176
Tssr153771 18 67449083 to 67449205 122 - TSS region transcription start site region 153771
Gm46621 18 67462234 to 67464438 2204 - lncRNA gene predicted gene, 46621
Gm24900 18 67462342 to 67462475 133 + snoRNA gene predicted gene, 24900
Cpgi10177 18 67464247 to 67465498 1251 CpG island CpG island 10177
Prelid3a 18 67464849 to 67480581 15732 + protein coding gene PRELI domain containing 3A
Tssr151745 18 67464860 to 67464922 62 + TSS region transcription start site region 151745
Tssr5360 18 67470464 to 67470466 2 + TSS region transcription start site region 5360
Cpgi10178 18 67472825 to 67473133 308 CpG island CpG island 10178
Spire1 18 67488209 to 67610790 122581 - protein coding gene spire type actin nucleation factor 1
Tssr153772 18 67489416 to 67489421 5 - TSS region transcription start site region 153772
Tssr153773 18 67502597 to 67502601 4 - TSS region transcription start site region 153773
Tssr153774 18 67508586 to 67508589 3 - TSS region transcription start site region 153774
Tssr153775 18 67549244 to 67549269 25 - TSS region transcription start site region 153775
Tssr153776 18 67555309 to 67555315 6 - TSS region transcription start site region 153776
Gm17669 18 67562387 to 67562851 464 + protein coding gene predicted gene, 17669
Tssr153777 18 67601414 to 67601421 7 - TSS region transcription start site region 153777
Cpgi10179 18 67610116 to 67611324 1208 CpG island CpG island 10179
Tssr153778 18 67610733 to 67610734 1 - TSS region transcription start site region 153778
Tssr153779 18 67610761 to 67610770 9 - TSS region transcription start site region 153779
Tssr5361 18 67610784 to 67610800 16 - TSS region transcription start site region 5361
Tssr153780 18 67610802 to 67610808 6 - TSS region transcription start site region 153780
Tssr153781 18 67610822 to 67610852 30 - TSS region transcription start site region 153781
Tssr153782 18 67610858 to 67610915 57 - TSS region transcription start site region 153782
Cep76 18 67617397 to 67641336 23939 - protein coding gene centrosomal protein 76
Tssr153783 18 67631659 to 67631663 4 - TSS region transcription start site region 153783
Cpgi10180 18 67640547 to 67641992 1445 CpG island CpG island 10180
Tssr153784 18 67641257 to 67641284 27 - TSS region transcription start site region 153784
Tssr153785 18 67641307 to 67641325 18 - TSS region transcription start site region 153785
Tssr153786 18 67641329 to 67641349 20 - TSS region transcription start site region 153786
Tssr153787 18 67641359 to 67641378 19 - TSS region transcription start site region 153787
Tssr151746 18 67641562 to 67641586 24 + TSS region transcription start site region 151746
Tssr151747 18 67641589 to 67641630 41 + TSS region transcription start site region 151747
Psmg2 18 67641599 to 67654162 12563 + protein coding gene proteasome (prosome, macropain) assembly chaperone 2
Tssr151748 18 67641631 to 67641642 11 + TSS region transcription start site region 151748
Ptpn2 18 67665511 to 67724595 59084 - protein coding gene protein tyrosine phosphatase, non-receptor type 2
Tssr151749 18 67668289 to 67668314 25 + TSS region transcription start site region 151749
Tssr153788 18 67669222 to 67669228 6 - TSS region transcription start site region 153788
Tssr153789 18 67675757 to 67675769 12 - TSS region transcription start site region 153789
Tssr153790 18 67675870 to 67675882 12 - TSS region transcription start site region 153790
Tssr153791 18 67677739 to 67677756 17 - TSS region transcription start site region 153791
Tssr153792 18 67677777 to 67677814 37 - TSS region transcription start site region 153792
Tssr153793 18 67680874 to 67680906 32 - TSS region transcription start site region 153793
Tssr151750 18 67700636 to 67700643 7 + TSS region transcription start site region 151750
Tssr153794 18 67718675 to 67718713 38 - TSS region transcription start site region 153794
Cpgi10181 18 67723686 to 67724806 1120 CpG island CpG island 10181
Tssr153795 18 67724286 to 67724307 21 - TSS region transcription start site region 153795
Tssr153796 18 67724526 to 67724559 33 - TSS region transcription start site region 153796
Tssr153797 18 67724560 to 67724599 39 - TSS region transcription start site region 153797
Gm46626 18 67761711 to 67768659 6948 - lncRNA gene predicted gene, 46626
Gm26910 18 67773712 to 67774857 1145 - lincRNA gene predicted gene, 26910
Cpgi10182 18 67774536 to 67775864 1328 CpG island CpG island 10182
Tssr153798 18 67774681 to 67774704 23 - TSS region transcription start site region 153798
Tssr153799 18 67774710 to 67774759 49 - TSS region transcription start site region 153799
Tssr151751 18 67774779 to 67774819 40 + TSS region transcription start site region 151751
Seh1l 18 67774876 to 67795461 20585 + protein coding gene SEH1-like (S. cerevisiae
Tssr151752 18 67774879 to 67774882 3 + TSS region transcription start site region 151752
Tssr151753 18 67774894 to 67774915 21 + TSS region transcription start site region 151753
Tssr151754 18 67774919 to 67774934 15 + TSS region transcription start site region 151754
Tssr151755 18 67774970 to 67774981 11 + TSS region transcription start site region 151755
Tssr151756 18 67774984 to 67775021 37 + TSS region transcription start site region 151756
Tssr153800 18 67775220 to 67775252 32 - TSS region transcription start site region 153800
Tssr151757 18 67775743 to 67775747 4 + TSS region transcription start site region 151757
4930549G23Rik 18 67776033 to 67799943 23910 - lncRNA gene RIKEN cDNA 4930549G23 gene
Tssr151758 18 67794449 to 67794462 13 + TSS region transcription start site region 151758
Tssr151759 18 67794577 to 67794589 12 + TSS region transcription start site region 151759
Cpgi10183 18 67799819 to 67800519 700 CpG island CpG island 10183
Tssr153801 18 67799924 to 67799975 51 - TSS region transcription start site region 153801
Tssr151760 18 67800101 to 67800147 46 + TSS region transcription start site region 151760
Cep192 18 67800107 to 67885170 85063 + protein coding gene centrosomal protein 192
Tssr151761 18 67800567 to 67800583 16 + TSS region transcription start site region 151761
Tssr151762 18 67815487 to 67815501 14 + TSS region transcription start site region 151762
D18Mit100 18 67900644 to 67900770 126 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 100
Gm8887 18 67907627 to 67908925 1298 + pseudogene predicted gene 8887
D18Mit50 18 67919085 to 67919240 155 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 50
Modvl5 18 67919085 to 67919240 155 QTL modifier of vacuolated lens 5
Tgq1 18 67919085 to 67919240 155 QTL triglyceride QTL 1
Cpgi10184 18 67932539 to 67934315 1776 CpG island CpG island 10184
Tssr151763 18 67933038 to 67933101 63 + TSS region transcription start site region 151763
Ldlrad4 18 67933257 to 68255549 322292 + protein coding gene low density lipoprotein receptor class A domain containing 4
Tssr151764 18 67933287 to 67933307 20 + TSS region transcription start site region 151764
Tssr151765 18 67933500 to 67933521 21 + TSS region transcription start site region 151765
Tssr151766 18 67933974 to 67933992 18 + TSS region transcription start site region 151766
Tssr151767 18 67933997 to 67934017 20 + TSS region transcription start site region 151767
Tssr151768 18 67934077 to 67934097 20 + TSS region transcription start site region 151768
Tssr151769 18 67934110 to 67934136 26 + TSS region transcription start site region 151769
Tssr151770 18 67934747 to 67934750 3 + TSS region transcription start site region 151770
Tssr151771 18 67935989 to 67935995 6 + TSS region transcription start site region 151771
5930405F01Rik 18 67946135 to 67949066 2931 unclassified gene RIKEN cDNA 5930405F01 gene
2210414L08Rik 18 67968191 to 67968982 791 unclassified gene RIKEN cDNA 2210414L08 gene
Tssr151772 18 67972339 to 67972351 12 + TSS region transcription start site region 151772
Tssr5362 18 68007498 to 68007509 11 + TSS region transcription start site region 5362
Tssr151773 18 68047020 to 68047024 4 + TSS region transcription start site region 151773
Tssr151774 18 68059697 to 68059710 13 + TSS region transcription start site region 151774
Tssr151775 18 68160186 to 68160194 8 + TSS region transcription start site region 151775
Gm18149 18 68168426 to 68168969 543 - pseudogene predicted gene, 18149
Cpgi10185 18 68189793 to 68189993 200 CpG island CpG island 10185
Tssr153802 18 68214508 to 68214521 13 - TSS region transcription start site region 153802
Tssr153803 18 68227614 to 68227633 19 - TSS region transcription start site region 153803
Tssr151776 18 68227838 to 68227880 42 + TSS region transcription start site region 151776
Tssr151777 18 68227928 to 68227975 47 + TSS region transcription start site region 151777
Tssr151778 18 68227987 to 68228002 15 + TSS region transcription start site region 151778
Tssr151779 18 68228035 to 68228048 13 + TSS region transcription start site region 151779
Tssr151780 18 68228055 to 68228087 32 + TSS region transcription start site region 151780
Tssr153804 18 68231080 to 68231094 14 - TSS region transcription start site region 153804
Fam210a 18 68260187 to 68300333 40146 - protein coding gene family with sequence similarity 210, member A
Mir7219 18 68260920 to 68260973 53 - miRNA gene microRNA 7219
Tssr153805 18 68268627 to 68268632 5 - TSS region transcription start site region 153805
Tssr151781 18 68272832 to 68272841 9 + TSS region transcription start site region 151781
Cpgi10186 18 68299584 to 68300850 1266 CpG island CpG island 10186
Tssr153806 18 68300149 to 68300193 44 - TSS region transcription start site region 153806
Tssr153807 18 68300194 to 68300228 34 - TSS region transcription start site region 153807
Tssr153808 18 68300240 to 68300259 19 - TSS region transcription start site region 153808
Tssr153809 18 68300329 to 68300336 7 - TSS region transcription start site region 153809
Tssr151782 18 68300345 to 68300348 3 + TSS region transcription start site region 151782
Tssr151783 18 68300351 to 68300409 58 + TSS region transcription start site region 151783
Rnmt 18 68300355 to 68324852 24497 + protein coding gene RNA (guanine-7-) methyltransferase
Tssr151784 18 68314551 to 68314563 12 + TSS region transcription start site region 151784
Tssr151785 18 68319003 to 68319019 16 + TSS region transcription start site region 151785
Cpgi10187 18 68337428 to 68337606 178 CpG island CpG island 10187
Tssr151786 18 68337504 to 68337517 13 + TSS region transcription start site region 151786
Tssr151787 18 68337545 to 68337546 1 + TSS region transcription start site region 151787
Mc5r 18 68337603 to 68339711 2108 + protein coding gene melanocortin 5 receptor
A030001D16Rik 18 68340371 to 68342445 2074 unclassified gene RIKEN cDNA A030001D16 gene
Tssr151788 18 68340393 to 68340396 3 + TSS region transcription start site region 151788
Tssr151789 18 68344403 to 68344418 15 + TSS region transcription start site region 151789
Tssr151790 18 68344450 to 68344465 15 + TSS region transcription start site region 151790
Tssr151791 18 68344482 to 68344518 36 + TSS region transcription start site region 151791
Tssr151792 18 68344523 to 68344535 12 + TSS region transcription start site region 151792
Tssr151793 18 68344773 to 68344788 15 + TSS region transcription start site region 151793
Gm29677 18 68398052 to 68565629 167577 + unclassified gene predicted gene, 29677
Tssr151794 18 68398128 to 68398136 8 + TSS region transcription start site region 151794
Tssr151795 18 68398931 to 68398935 4 + TSS region transcription start site region 151795
Mc2r 18 68406907 to 68429251 22344 - protein coding gene melanocortin 2 receptor
Tssr153810 18 68427879 to 68427913 34 - TSS region transcription start site region 153810
Tssr153811 18 68429235 to 68429258 23 - TSS region transcription start site region 153811
Tssr153812 18 68429263 to 68429268 5 - TSS region transcription start site region 153812
Tssr153813 18 68429280 to 68429293 13 - TSS region transcription start site region 153813
Tssr153814 18 68429315 to 68429320 5 - TSS region transcription start site region 153814
Tssr151796 18 68442324 to 68442334 10 + TSS region transcription start site region 151796
D18Mit39 18 68442485 to 68442708 223 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 39
Gm41765 18 68443877 to 68469292 25415 - lncRNA gene predicted gene, 41765
Tssr153815 18 68449254 to 68449268 14 - TSS region transcription start site region 153815
1700127G19Rik 18 68474712 to 68475211 499 unclassified gene RIKEN cDNA 1700127G19 gene
Tssr153816 18 68475162 to 68475173 11 - TSS region transcription start site region 153816
D18Mit9 18 68535229 to 68535397 168 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 9
Hdlq30 18 68535229 to 68535397 168 QTL HDL QTL 30
Par5 18 68535229 to 68535397 168 QTL pulmonary adenoma resistance 5
Gm30700 18 68551066 to 68590899 39833 - lncRNA gene predicted gene, 30700
Gm30641 18 68577851 to 68586338 8487 + lincRNA gene predicted gene, 30641
Tssr153817 18 68589441 to 68589445 4 - TSS region transcription start site region 153817
Tssr153818 18 68590877 to 68590889 12 - TSS region transcription start site region 153818
Gm30821 18 68591012 to 68709309 118297 + lncRNA gene predicted gene, 30821
Tssr5363 18 68629304 to 68629312 8 + TSS region transcription start site region 5363
D18Mit207 18 68645586 to 68645706 120 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 207
Tssr151797 18 68692050 to 68692062 12 + TSS region transcription start site region 151797
Tssr151798 18 68692097 to 68692130 33 + TSS region transcription start site region 151798
Tssr153819 18 68704411 to 68704433 22 - TSS region transcription start site region 153819
Gm41766 18 68713643 to 68718226 4583 + lncRNA gene predicted gene, 41766
Mir6356 18 68739400 to 68739501 101 + miRNA gene microRNA 6356
Gm41767 18 68789565 to 68795213 5648 + lncRNA gene predicted gene, 41767
4930546C10Rik 18 68944633 to 68950141 5508 - unclassified gene RIKEN cDNA 4930546C10 gene
Gm31088 18 69016025 to 69087248 71223 + lncRNA gene predicted gene, 31088
D18Dcr8 18 69019538 to 69019633 95 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 8
Mir145b 18 69022199 to 69022273 74 - miRNA gene microRNA 145b
D18Mit185 18 69032786 to 69032882 96 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 185
Gm31147 18 69120980 to 69126340 5360 - lncRNA gene predicted gene, 31147
Gm41768 18 69171689 to 69189532 17843 + lncRNA gene predicted gene, 41768
Gm23536 18 69173987 to 69174120 133 - rRNA gene predicted gene, 23536
Gm31294 18 69193336 to 69195744 2408 - lincRNA gene predicted gene, 31294
Cpgi10188 18 69198163 to 69198839 676 CpG island CpG island 10188
Gm4402 18 69217500 to 69222229 4729 unclassified gene predicted gene 4402
Gm4842 18 69256642 to 69257127 485 + pseudogene predicted pseudogene 4842
Cpgi10189 18 69344120 to 69344580 460 CpG island CpG island 10189
Tssr151799 18 69344469 to 69344501 32 + TSS region transcription start site region 151799
Tcf4 18 69344488 to 69687967 343479 + protein coding gene transcription factor 4
Tssr151800 18 69344503 to 69344530 27 + TSS region transcription start site region 151800
Tssr151801 18 69344541 to 69344559 18 + TSS region transcription start site region 151801
Tssr151802 18 69344575 to 69344586 11 + TSS region transcription start site region 151802
Tssr151803 18 69345760 to 69345811 51 + TSS region transcription start site region 151803
Tssr151804 18 69345822 to 69345840 18 + TSS region transcription start site region 151804
Cpgi10190 18 69345832 to 69346873 1041 CpG island CpG island 10190
Tssr151805 18 69346143 to 69346198 55 + TSS region transcription start site region 151805
Tssr151806 18 69347061 to 69347064 3 + TSS region transcription start site region 151806
Tssr151807 18 69347600 to 69347607 7 + TSS region transcription start site region 151807
6030446J10Rik 18 69353598 to 69358475 4877 unclassified gene RIKEN cDNA 6030446J10 gene
Tssr151808 18 69365369 to 69365374 5 + TSS region transcription start site region 151808
Tssr151809 18 69382241 to 69382251 10 + TSS region transcription start site region 151809
Tssr151810 18 69404084 to 69404089 5 + TSS region transcription start site region 151810
Tssr153820 18 69415648 to 69415653 5 - TSS region transcription start site region 153820