Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:66320044-67630056

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mom3 18 13896966 to 66965891 53068925 QTL modifier of Min 3
Sstapa2 18 56661558 to 66819414 10157856 QTL suseptibility to Staphylococcus aureus infection 2
Gm20294 18 66417143 to 66418131 988 + pseudogene predicted gene, 20294
Cpgi10160 18 66458194 to 66459389 1195 CpG island CpG island 10160
Tssr151705 18 66458587 to 66458604 17 + TSS region transcription start site region 151705
Pmaip1 18 66458604 to 66465550 6946 + protein coding gene phorbol-12-myristate-13-acetate-induced protein 1
Cpgi10161 18 66460854 to 66461124 270 CpG island CpG island 10161
Cpgi10162 18 66470804 to 66471118 314 CpG island CpG island 10162
Tssr151706 18 66470842 to 66470847 5 + TSS region transcription start site region 151706
Tssr153741 18 66471514 to 66471521 7 - TSS region transcription start site region 153741
Tssr151707 18 66475623 to 66475642 19 + TSS region transcription start site region 151707
Tssr153742 18 66476555 to 66476561 6 - TSS region transcription start site region 153742
Tssr153743 18 66504059 to 66504062 3 - TSS region transcription start site region 153743
Tssr151708 18 66504170 to 66504187 17 + TSS region transcription start site region 151708
Gm9926 18 66504178 to 66511737 7559 + lncRNA gene predicted gene 9926
Tssr151709 18 66509872 to 66509877 5 + TSS region transcription start site region 151709
Cpgi10163 18 66510410 to 66510621 211 CpG island CpG island 10163
D18Mit81 18 66541078 to 66541225 147 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 81
Ett1 18 66541078 to 68535397 1994319 QTL experimentally induced testicular teratoma 1
Tssr151710 18 66548891 to 66548897 6 + TSS region transcription start site region 151710
Gm24679 18 66549935 to 66550045 110 - snoRNA gene predicted gene, 24679
Gm36092 18 66561615 to 66561939 324 - pseudogene predicted gene, 36092
Gm41762 18 66633905 to 66657138 23233 + lncRNA gene predicted gene, 41762
Gm30190 18 66673014 to 66674515 1501 - lncRNA gene predicted gene, 30190
Tssr153744 18 66674499 to 66674512 13 - TSS region transcription start site region 153744
Gm22219 18 66676361 to 66676679 318 + lncRNA gene predicted gene, 22219
D18Mit184 18 66819243 to 66819414 171 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 184
Mc4r 18 66857715 to 66860472 2757 - protein coding gene melanocortin 4 receptor
Cpgi10164 18 66859671 to 66859984 313 CpG island CpG island 10164
Tssr153745 18 66860458 to 66860485 27 - TSS region transcription start site region 153745
Tssr153746 18 66860497 to 66860508 11 - TSS region transcription start site region 153746
Gm19784 18 66924762 to 66949961 25199 - lncRNA gene predicted gene, 19784
D18Mit209 18 66965767 to 66965891 124 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 209
Cpgi10165 18 66968951 to 66969223 272 CpG island CpG island 10165
Tssr151711 18 66975044 to 66975056 12 + TSS region transcription start site region 151711
Tssr153747 18 67034503 to 67034507 4 - TSS region transcription start site region 153747
Tssr153748 18 67045932 to 67045944 12 - TSS region transcription start site region 153748
Tssr153749 18 67048189 to 67048192 3 - TSS region transcription start site region 153749
Tssr153750 18 67057178 to 67057182 4 - TSS region transcription start site region 153750
Tssr153751 18 67057231 to 67057235 4 - TSS region transcription start site region 153751
Tssr153752 18 67061329 to 67061335 6 - TSS region transcription start site region 153752
Tssr153753 18 67062997 to 67063001 4 - TSS region transcription start site region 153753
Tssr5358 18 67065251 to 67065254 3 - TSS region transcription start site region 5358
Tssr153754 18 67066453 to 67066468 15 - TSS region transcription start site region 153754
Tssr153755 18 67066473 to 67066485 12 - TSS region transcription start site region 153755
Tssr151712 18 67066577 to 67066593 16 + TSS region transcription start site region 151712
Tssr151713 18 67066608 to 67066615 7 + TSS region transcription start site region 151713
Tssr151714 18 67066627 to 67066637 10 + TSS region transcription start site region 151714
Tssr151715 18 67072968 to 67072970 2 + TSS region transcription start site region 151715
Cpgi10166 18 67087966 to 67089165 1199 CpG island CpG island 10166
Tssr151716 18 67088232 to 67088248 16 + TSS region transcription start site region 151716
Tssr151717 18 67088287 to 67088345 58 + TSS region transcription start site region 151717
Gnal 18 67088336 to 67226792 138456 + protein coding gene guanine nucleotide binding protein, alpha stimulating, olfactory type
Tssr151718 18 67088348 to 67088359 11 + TSS region transcription start site region 151718
Cpgi10167 18 67089614 to 67089806 192 CpG island CpG island 10167
Cpgi10168 18 67132889 to 67134286 1397 CpG island CpG island 10168
Tssr151719 18 67133078 to 67133086 8 + TSS region transcription start site region 151719
Tssr151720 18 67133097 to 67133109 12 + TSS region transcription start site region 151720
Tssr151721 18 67133478 to 67133496 18 + TSS region transcription start site region 151721
Tssr151722 18 67133498 to 67133535 37 + TSS region transcription start site region 151722
Tssr151723 18 67133547 to 67133585 38 + TSS region transcription start site region 151723
Tssr151724 18 67133713 to 67133734 21 + TSS region transcription start site region 151724
Tssr153756 18 67134071 to 67134082 11 - TSS region transcription start site region 153756
Tssr153757 18 67134117 to 67134126 9 - TSS region transcription start site region 153757
Tssr153758 18 67134165 to 67134189 24 - TSS region transcription start site region 153758
Tssr153759 18 67134194 to 67134203 9 - TSS region transcription start site region 153759
Gm23512 18 67174885 to 67174991 106 - snRNA gene predicted gene, 23512
Cpgi10169 18 67205130 to 67206190 1060 CpG island CpG island 10169
Chmp1b 18 67205359 to 67207887 2528 + protein coding gene charged multivesicular body protein 1B
Tssr151725 18 67205369 to 67205426 57 + TSS region transcription start site region 151725
Tssr151726 18 67205433 to 67205452 19 + TSS region transcription start site region 151726
Mppe1 18 67225530 to 67245830 20300 - protein coding gene metallophosphoesterase 1
Tssr153760 18 67228875 to 67228878 3 - TSS region transcription start site region 153760
Tssr153761 18 67243069 to 67243073 4 - TSS region transcription start site region 153761
Tssr151727 18 67243489 to 67243513 24 + TSS region transcription start site region 151727
Tssr153762 18 67244389 to 67244405 16 - TSS region transcription start site region 153762
Cpgi10170 18 67245080 to 67245845 765 CpG island CpG island 10170
Tssr153763 18 67245448 to 67245489 41 - TSS region transcription start site region 153763
Tssr153764 18 67245600 to 67245690 90 - TSS region transcription start site region 153764
Tssr153765 18 67245818 to 67245842 24 - TSS region transcription start site region 153765
Tssr153766 18 67248804 to 67248829 25 - TSS region transcription start site region 153766
Tssr5359 18 67252342 to 67252346 4 + TSS region transcription start site region 5359
Tssr151728 18 67287823 to 67287826 3 + TSS region transcription start site region 151728
Cpgi10171 18 67288782 to 67289966 1184 CpG island CpG island 10171
Tssr153767 18 67288935 to 67288957 22 - TSS region transcription start site region 153767
Tssr151729 18 67289205 to 67289225 20 + TSS region transcription start site region 151729
Impa2 18 67289223 to 67318841 29618 + protein coding gene inositol (myo)-1(or 4)-monophosphatase 2
Tssr151730 18 67289227 to 67289234 7 + TSS region transcription start site region 151730
Tssr151731 18 67289235 to 67289258 23 + TSS region transcription start site region 151731
Gm30321 18 67289513 to 67305817 16304 - lncRNA gene predicted gene, 30321
Cpgi10172 18 67291232 to 67291831 599 CpG island CpG island 10172
Tssr153768 18 67304643 to 67304667 24 - TSS region transcription start site region 153768
Tssr151732 18 67308541 to 67308563 22 + TSS region transcription start site region 151732
Tssr151733 18 67308569 to 67308598 29 + TSS region transcription start site region 151733
B430212C06Rik 18 67321209 to 67344103 22894 - lncRNA gene RIKEN cDNA B430212C06 gene
Cpgi10173 18 67343161 to 67344137 976 CpG island CpG island 10173
Cidea 18 67343564 to 67367794 24230 + protein coding gene cell death-inducing DNA fragmentation factor, alpha subunit-like effector A
Tssr151734 18 67343594 to 67343605 11 + TSS region transcription start site region 151734
Tssr151735 18 67343753 to 67343764 11 + TSS region transcription start site region 151735
Tssr151736 18 67343783 to 67343802 19 + TSS region transcription start site region 151736
Tssr151737 18 67363774 to 67363776 2 + TSS region transcription start site region 151737
Cpgi10174 18 67390115 to 67391699 1584 CpG island CpG island 10174
Tssr151738 18 67390514 to 67390527 13 + TSS region transcription start site region 151738
Tssr151739 18 67390666 to 67390691 25 + TSS region transcription start site region 151739
Tssr151740 18 67390700 to 67390724 24 + TSS region transcription start site region 151740
Tubb6 18 67390731 to 67402749 12018 + protein coding gene tubulin, beta 6 class V
Cpgi10175 18 67401306 to 67402185 879 CpG island CpG island 10175
Tssr153769 18 67401594 to 67401603 9 - TSS region transcription start site region 153769
Tssr151741 18 67401700 to 67401721 21 + TSS region transcription start site region 151741
Tssr151742 18 67401731 to 67401748 17 + TSS region transcription start site region 151742
Tssr151743 18 67401832 to 67401852 20 + TSS region transcription start site region 151743
Tssr151744 18 67401857 to 67401869 12 + TSS region transcription start site region 151744
Afg3l2 18 67404760 to 67449136 44376 - protein coding gene AFG3-like AAA ATPase 2
Tssr153770 18 67439445 to 67439455 10 - TSS region transcription start site region 153770
Cpgi10176 18 67448414 to 67449591 1177 CpG island CpG island 10176
Tssr153771 18 67449083 to 67449205 122 - TSS region transcription start site region 153771
Gm46621 18 67462234 to 67464438 2204 - lncRNA gene predicted gene, 46621
Gm24900 18 67462342 to 67462475 133 + snoRNA gene predicted gene, 24900
Cpgi10177 18 67464247 to 67465498 1251 CpG island CpG island 10177
Prelid3a 18 67464849 to 67480581 15732 + protein coding gene PRELI domain containing 3A
Tssr151745 18 67464860 to 67464922 62 + TSS region transcription start site region 151745
Tssr5360 18 67470464 to 67470466 2 + TSS region transcription start site region 5360
Cpgi10178 18 67472825 to 67473133 308 CpG island CpG island 10178
Spire1 18 67488209 to 67610790 122581 - protein coding gene spire type actin nucleation factor 1
Tssr153772 18 67489416 to 67489421 5 - TSS region transcription start site region 153772
Tssr153773 18 67502597 to 67502601 4 - TSS region transcription start site region 153773
Tssr153774 18 67508586 to 67508589 3 - TSS region transcription start site region 153774
Tssr153775 18 67549244 to 67549269 25 - TSS region transcription start site region 153775
Tssr153776 18 67555309 to 67555315 6 - TSS region transcription start site region 153776
Gm17669 18 67562387 to 67562851 464 + protein coding gene predicted gene, 17669
Tssr153777 18 67601414 to 67601421 7 - TSS region transcription start site region 153777
Cpgi10179 18 67610116 to 67611324 1208 CpG island CpG island 10179
Tssr153778 18 67610733 to 67610734 1 - TSS region transcription start site region 153778
Tssr153779 18 67610761 to 67610770 9 - TSS region transcription start site region 153779
Tssr5361 18 67610784 to 67610800 16 - TSS region transcription start site region 5361
Tssr153780 18 67610802 to 67610808 6 - TSS region transcription start site region 153780
Tssr153781 18 67610822 to 67610852 30 - TSS region transcription start site region 153781
Tssr153782 18 67610858 to 67610915 57 - TSS region transcription start site region 153782
Cep76 18 67617397 to 67641336 23939 - protein coding gene centrosomal protein 76