Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:64702705-65402831

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcsq1 18 63670000 to 65295000 1625000 QTL methacholine sensitivity QTL 1, baseline
Gm23016 18 64728066 to 64728127 61 + snRNA gene predicted gene, 23016
Gm24504 18 64786329 to 64786428 99 - snRNA gene predicted gene, 24504
Gm29860 18 64799964 to 64802926 2962 - lncRNA gene predicted gene, 29860
D18Mit183 18 64828175 to 64828259 84 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 183
Tssr151548 18 64852132 to 64852178 46 + TSS region transcription start site region 151548
Gm46639 18 64852138 to 64875198 23060 + lncRNA gene predicted gene, 46639
A330084C13Rik 18 64886726 to 64888491 1765 - antisense lncRNA gene RIKEN cDNA A330084C13 gene
Cpgi10147 18 64887142 to 64888656 1514 CpG island CpG island 10147
Tssr151549 18 64887690 to 64887762 72 + TSS region transcription start site region 151549
Nedd4l 18 64887705 to 65217831 330126 + protein coding gene neural precursor cell expressed, developmentally down-regulated gene 4-like
Tssr151550 18 64887771 to 64887795 24 + TSS region transcription start site region 151550
Tssr151551 18 64887814 to 64887829 15 + TSS region transcription start site region 151551
Tssr151552 18 64887839 to 64887853 14 + TSS region transcription start site region 151552
Tssr153681 18 64888731 to 64888752 21 - TSS region transcription start site region 153681
Tssr153682 18 64888776 to 64888783 7 - TSS region transcription start site region 153682
Tssr151553 18 64888856 to 64888869 13 + TSS region transcription start site region 151553
Tssr151554 18 64888903 to 64888921 18 + TSS region transcription start site region 151554
Cpgi10148 18 64888925 to 64889134 209 CpG island CpG island 10148
Tssr151555 18 64888960 to 64889035 75 + TSS region transcription start site region 151555
Tssr151556 18 64908670 to 64908683 13 + TSS region transcription start site region 151556
Tssr151557 18 64921105 to 64921146 41 + TSS region transcription start site region 151557
Tssr151558 18 64976862 to 64976875 13 + TSS region transcription start site region 151558
Tssr153683 18 64999372 to 64999380 8 - TSS region transcription start site region 153683
Tssr151559 18 65008024 to 65008043 19 + TSS region transcription start site region 151559
Tssr151560 18 65023700 to 65023713 13 + TSS region transcription start site region 151560
Tssr151561 18 65023715 to 65023721 6 + TSS region transcription start site region 151561
Tssr151562 18 65023730 to 65023736 6 + TSS region transcription start site region 151562
Tssr5352 18 65023741 to 65023744 3 + TSS region transcription start site region 5352
Tssr151563 18 65023811 to 65023852 41 + TSS region transcription start site region 151563
Tssr151564 18 65023862 to 65023903 41 + TSS region transcription start site region 151564
Tssr151565 18 65023909 to 65023916 7 + TSS region transcription start site region 151565
Tssr151566 18 65025908 to 65025957 49 + TSS region transcription start site region 151566
Tssr151567 18 65025983 to 65026004 21 + TSS region transcription start site region 151567
Tssr153684 18 65040693 to 65040710 17 - TSS region transcription start site region 153684
Tssr153685 18 65040730 to 65040741 11 - TSS region transcription start site region 153685
Gm41756 18 65046818 to 65050600 3782 - lncRNA gene predicted gene, 41756
Tssr151568 18 65050917 to 65050954 37 + TSS region transcription start site region 151568
Tssr151569 18 65050982 to 65050998 16 + TSS region transcription start site region 151569
Tssr151570 18 65051009 to 65051032 23 + TSS region transcription start site region 151570
Tssr151571 18 65072217 to 65072260 43 + TSS region transcription start site region 151571
Tssr151572 18 65072267 to 65072279 12 + TSS region transcription start site region 151572
Tssr151573 18 65072293 to 65072321 28 + TSS region transcription start site region 151573
Tssr151574 18 65076032 to 65076061 29 + TSS region transcription start site region 151574
Tssr151575 18 65076070 to 65076101 31 + TSS region transcription start site region 151575
Tssr151576 18 65077631 to 65077639 8 + TSS region transcription start site region 151576
Cpgi10149 18 65083523 to 65084284 761 CpG island CpG island 10149
Tssr151577 18 65083557 to 65083579 22 + TSS region transcription start site region 151577
Tssr151578 18 65083609 to 65083624 15 + TSS region transcription start site region 151578
Tssr151579 18 65143566 to 65143602 36 + TSS region transcription start site region 151579
Tssr151580 18 65143606 to 65143621 15 + TSS region transcription start site region 151580
Tssr151581 18 65143698 to 65143724 26 + TSS region transcription start site region 151581
Tssr153686 18 65152926 to 65152928 2 - TSS region transcription start site region 153686
Tssr151582 18 65172149 to 65172153 4 + TSS region transcription start site region 151582
Tssr151583 18 65178333 to 65178336 3 + TSS region transcription start site region 151583
Gm41755 18 65217775 to 65223110 5335 - lncRNA gene predicted gene, 41755
Tssr153687 18 65220822 to 65220830 8 - TSS region transcription start site region 153687
Tssr153688 18 65222686 to 65222691 5 - TSS region transcription start site region 153688
Tssr5353 18 65222986 to 65222993 7 + TSS region transcription start site region 5353
Gm29966 18 65244273 to 65248058 3785 + lncRNA gene predicted gene, 29966
Tssr151584 18 65244274 to 65244280 6 + TSS region transcription start site region 151584
Tssr151585 18 65244287 to 65244305 18 + TSS region transcription start site region 151585
Tssr151586 18 65244309 to 65244322 13 + TSS region transcription start site region 151586
Tssr151587 18 65245993 to 65246005 12 + TSS region transcription start site region 151587
Tssr151588 18 65246152 to 65246179 27 + TSS region transcription start site region 151588
Tssr151589 18 65247116 to 65247127 11 + TSS region transcription start site region 151589
Tssr151590 18 65247182 to 65247194 12 + TSS region transcription start site region 151590
Tssr151591 18 65248238 to 65248260 22 + TSS region transcription start site region 151591
Mir122 18 65248861 to 65248926 65 + miRNA gene microRNA 122
Tssr151592 18 65248924 to 65248925 1 + TSS region transcription start site region 151592
Alpk2 18 65265529 to 65393888 128359 - protein coding gene alpha-kinase 2
Tssr151593 18 65302927 to 65302966 39 + TSS region transcription start site region 151593
Tssr153689 18 65306050 to 65306065 15 - TSS region transcription start site region 153689
F730048M01Rik 18 65306431 to 65309875 3444 unclassified gene RIKEN cDNA F730048M01 gene
Tssr153690 18 65307739 to 65307770 31 - TSS region transcription start site region 153690
Tssr153691 18 65322139 to 65322152 13 - TSS region transcription start site region 153691
Tssr153692 18 65328628 to 65328644 16 - TSS region transcription start site region 153692
Tssr153693 18 65328682 to 65328696 14 - TSS region transcription start site region 153693
Tssr153694 18 65349756 to 65349778 22 - TSS region transcription start site region 153694
Tssr151594 18 65350050 to 65350071 21 + TSS region transcription start site region 151594
Gm41757 18 65350665 to 65368726 18061 + lncRNA gene predicted gene, 41757
Tssr151595 18 65352406 to 65352412 6 + TSS region transcription start site region 151595
Tssr153695 18 65375401 to 65375416 15 - TSS region transcription start site region 153695
Tssr151596 18 65375670 to 65375710 40 + TSS region transcription start site region 151596
Tssr153696 18 65381657 to 65381680 23 - TSS region transcription start site region 153696
Tssr153697 18 65381896 to 65381919 23 - TSS region transcription start site region 153697
Tssr151597 18 65382049 to 65382073 24 + TSS region transcription start site region 151597
Tssr151598 18 65382074 to 65382098 24 + TSS region transcription start site region 151598
Tssr153698 18 65382520 to 65382531 11 - TSS region transcription start site region 153698
Tssr151599 18 65382690 to 65382712 22 + TSS region transcription start site region 151599
D18Mit182 18 65385206 to 65385316 110 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 182
Tssr151600 18 65386025 to 65386043 18 + TSS region transcription start site region 151600
Tssr151601 18 65386055 to 65386099 44 + TSS region transcription start site region 151601
Tssr153699 18 65393698 to 65393709 11 - TSS region transcription start site region 153699
Tssr153700 18 65393844 to 65393922 78 - TSS region transcription start site region 153700
Tssr153701 18 65393954 to 65393963 9 - TSS region transcription start site region 153701
Tssr153702 18 65393980 to 65393991 11 - TSS region transcription start site region 153702
Tssr153703 18 65394008 to 65394021 13 - TSS region transcription start site region 153703