Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:64223175-65433259

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcsq1 18 63670000 to 65295000 1625000 QTL methacholine sensitivity QTL 1, baseline
St8sia3os 18 64157724 to 64277180 119456 - antisense lncRNA gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand
St8sia3 18 64254359 to 64276144 21785 + protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
Tssr151522 18 64254359 to 64254387 28 + TSS region transcription start site region 151522
Tssr151523 18 64264610 to 64264639 29 + TSS region transcription start site region 151523
Tssr151524 18 64264851 to 64264862 11 + TSS region transcription start site region 151524
Tssr151525 18 64264869 to 64264881 12 + TSS region transcription start site region 151525
Cpgi10134 18 64265037 to 64266664 1627 CpG island CpG island 10134
Tssr151526 18 64265038 to 64265067 29 + TSS region transcription start site region 151526
Tssr151527 18 64265072 to 64265087 15 + TSS region transcription start site region 151527
Tssr151528 18 64265153 to 64265181 28 + TSS region transcription start site region 151528
Tssr151529 18 64265190 to 64265203 13 + TSS region transcription start site region 151529
Tssr151530 18 64265207 to 64265222 15 + TSS region transcription start site region 151530
Tssr151531 18 64265225 to 64265234 9 + TSS region transcription start site region 151531
Tssr151532 18 64265342 to 64265365 23 + TSS region transcription start site region 151532
Tssr151533 18 64265367 to 64265413 46 + TSS region transcription start site region 151533
Tssr151534 18 64265418 to 64265430 12 + TSS region transcription start site region 151534
C630043D15Rik 18 64267737 to 64268332 595 unclassified gene RIKEN cDNA C630043D15 gene
Tssr153654 18 64277157 to 64277169 12 - TSS region transcription start site region 153654
Tssr153655 18 64277170 to 64277182 12 - TSS region transcription start site region 153655
Rps15-ps3 18 64286284 to 64288834 2550 + pseudogene ribosomal protein S15, pseudogene 3
Tssr151535 18 64288335 to 64288336 1 + TSS region transcription start site region 151535
Tssr151536 18 64289002 to 64289052 50 + TSS region transcription start site region 151536
Cpgi10135 18 64332121 to 64332416 295 CpG island CpG island 10135
Cpgi10136 18 64332614 to 64333625 1011 CpG island CpG island 10136
Tssr153656 18 64334844 to 64334848 4 - TSS region transcription start site region 153656
Cpgi10137 18 64339630 to 64341688 2058 CpG island CpG island 10137
Tssr153657 18 64339788 to 64339791 3 - TSS region transcription start site region 153657
Tssr151537 18 64340020 to 64340042 22 + TSS region transcription start site region 151537
Tssr151538 18 64340052 to 64340067 15 + TSS region transcription start site region 151538
Tssr151539 18 64340225 to 64340241 16 + TSS region transcription start site region 151539
Onecut2 18 64340364 to 64398488 58124 + protein coding gene one cut domain, family member 2
Tssr151540 18 64340569 to 64340586 17 + TSS region transcription start site region 151540
Tssr153658 18 64342342 to 64342379 37 - TSS region transcription start site region 153658
Cpgi10138 18 64342454 to 64343404 950 CpG island CpG island 10138
Cpgi10139 18 64345113 to 64345738 625 CpG island CpG island 10139
Tssr153659 18 64345806 to 64345819 13 - TSS region transcription start site region 153659
Cpgi10140 18 64345932 to 64346223 291 CpG island CpG island 10140
Tssr151541 18 64386589 to 64386605 16 + TSS region transcription start site region 151541
Tssr151542 18 64386648 to 64386659 11 + TSS region transcription start site region 151542
A330041D05Rik 18 64388502 to 64390265 1763 unclassified gene RIKEN cDNA A330041D05 gene
Gm36804 18 64428018 to 64428684 666 - pseudogene predicted gene, 36804
Cpgi10141 18 64428304 to 64428712 408 CpG island CpG island 10141
Amd-ps3 18 64448519 to 64450014 1495 - pseudogene S-adenosylmethionine decarboxylase, pseudogene 3
Fech 18 64456550 to 64489066 32516 - protein coding gene ferrochelatase
Tssr153660 18 64457292 to 64457309 17 - TSS region transcription start site region 153660
Tssr153661 18 64457876 to 64457886 10 - TSS region transcription start site region 153661
D18Mit206 18 64458775 to 64458894 119 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 206
Tssr153662 18 64476614 to 64476618 4 - TSS region transcription start site region 153662
Tssr153663 18 64479383 to 64479392 9 - TSS region transcription start site region 153663
Tssr153664 18 64479396 to 64479407 11 - TSS region transcription start site region 153664
Cpgi10142 18 64488590 to 64489525 935 CpG island CpG island 10142
Tssr153665 18 64488946 to 64488976 30 - TSS region transcription start site region 153665
Tssr153666 18 64488977 to 64488982 5 - TSS region transcription start site region 153666
Tssr153667 18 64489022 to 64489040 18 - TSS region transcription start site region 153667
Tssr153668 18 64489042 to 64489082 40 - TSS region transcription start site region 153668
Nars 18 64499665 to 64516557 16892 - protein coding gene asparaginyl-tRNA synthetase
Tssr153669 18 64504998 to 64505008 10 - TSS region transcription start site region 153669
Tssr151543 18 64511783 to 64511817 34 + TSS region transcription start site region 151543
Tssr153670 18 64516043 to 64516048 5 - TSS region transcription start site region 153670
Cpgi10143 18 64516124 to 64516785 661 CpG island CpG island 10143
Tssr153671 18 64516492 to 64516545 53 - TSS region transcription start site region 153671
Tssr153672 18 64516547 to 64516565 18 - TSS region transcription start site region 153672
Tssr151544 18 64519942 to 64519956 14 + TSS region transcription start site region 151544
Atp8b1 18 64528979 to 64661000 132021 - protein coding gene ATPase, class I, type 8B, member 1
Cpgi10144 18 64531274 to 64531654 380 CpG island CpG island 10144
Tssr151545 18 64554666 to 64554670 4 + TSS region transcription start site region 151545
Cpgi10145 18 64556793 to 64556946 153 CpG island CpG island 10145
Gm6978 18 64611610 to 64612459 849 - pseudogene predicted gene 6978
Cpgi10146 18 64659854 to 64661711 1857 CpG island CpG island 10146
Tssr153673 18 64660751 to 64660771 20 - TSS region transcription start site region 153673
Tssr153674 18 64660823 to 64660915 92 - TSS region transcription start site region 153674
Tssr153675 18 64660956 to 64660980 24 - TSS region transcription start site region 153675
Tssr153676 18 64660981 to 64661010 29 - TSS region transcription start site region 153676
Tssr153677 18 64661013 to 64661063 50 - TSS region transcription start site region 153677
Tssr153678 18 64661064 to 64661081 17 - TSS region transcription start site region 153678
Tssr151546 18 64661158 to 64661183 25 + TSS region transcription start site region 151546
Tssr153679 18 64692157 to 64692163 6 - TSS region transcription start site region 153679
Tssr151547 18 64700011 to 64700015 4 + TSS region transcription start site region 151547
Tssr153680 18 64700049 to 64700056 7 - TSS region transcription start site region 153680
Gm23016 18 64728066 to 64728127 61 + snRNA gene predicted gene, 23016
Gm24504 18 64786329 to 64786428 99 - snRNA gene predicted gene, 24504
Gm29860 18 64799964 to 64802926 2962 - lncRNA gene predicted gene, 29860
D18Mit183 18 64828175 to 64828259 84 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 183
Tssr151548 18 64852132 to 64852178 46 + TSS region transcription start site region 151548
Gm46639 18 64852138 to 64875198 23060 + lncRNA gene predicted gene, 46639
A330084C13Rik 18 64886726 to 64888491 1765 - antisense lncRNA gene RIKEN cDNA A330084C13 gene
Cpgi10147 18 64887142 to 64888656 1514 CpG island CpG island 10147
Tssr151549 18 64887690 to 64887762 72 + TSS region transcription start site region 151549
Nedd4l 18 64887705 to 65217831 330126 + protein coding gene neural precursor cell expressed, developmentally down-regulated gene 4-like
Tssr151550 18 64887771 to 64887795 24 + TSS region transcription start site region 151550
Tssr151551 18 64887814 to 64887829 15 + TSS region transcription start site region 151551
Tssr151552 18 64887839 to 64887853 14 + TSS region transcription start site region 151552
Tssr153681 18 64888731 to 64888752 21 - TSS region transcription start site region 153681
Tssr153682 18 64888776 to 64888783 7 - TSS region transcription start site region 153682
Tssr151553 18 64888856 to 64888869 13 + TSS region transcription start site region 151553
Tssr151554 18 64888903 to 64888921 18 + TSS region transcription start site region 151554
Cpgi10148 18 64888925 to 64889134 209 CpG island CpG island 10148
Tssr151555 18 64888960 to 64889035 75 + TSS region transcription start site region 151555
Tssr151556 18 64908670 to 64908683 13 + TSS region transcription start site region 151556
Tssr151557 18 64921105 to 64921146 41 + TSS region transcription start site region 151557
Tssr151558 18 64976862 to 64976875 13 + TSS region transcription start site region 151558
Tssr153683 18 64999372 to 64999380 8 - TSS region transcription start site region 153683
Tssr151559 18 65008024 to 65008043 19 + TSS region transcription start site region 151559
Tssr151560 18 65023700 to 65023713 13 + TSS region transcription start site region 151560
Tssr151561 18 65023715 to 65023721 6 + TSS region transcription start site region 151561
Tssr151562 18 65023730 to 65023736 6 + TSS region transcription start site region 151562
Tssr5352 18 65023741 to 65023744 3 + TSS region transcription start site region 5352
Tssr151563 18 65023811 to 65023852 41 + TSS region transcription start site region 151563
Tssr151564 18 65023862 to 65023903 41 + TSS region transcription start site region 151564
Tssr151565 18 65023909 to 65023916 7 + TSS region transcription start site region 151565
Tssr151566 18 65025908 to 65025957 49 + TSS region transcription start site region 151566
Tssr151567 18 65025983 to 65026004 21 + TSS region transcription start site region 151567
Tssr153684 18 65040693 to 65040710 17 - TSS region transcription start site region 153684
Tssr153685 18 65040730 to 65040741 11 - TSS region transcription start site region 153685
Gm41756 18 65046818 to 65050600 3782 - lncRNA gene predicted gene, 41756
Tssr151568 18 65050917 to 65050954 37 + TSS region transcription start site region 151568
Tssr151569 18 65050982 to 65050998 16 + TSS region transcription start site region 151569
Tssr151570 18 65051009 to 65051032 23 + TSS region transcription start site region 151570
Tssr151571 18 65072217 to 65072260 43 + TSS region transcription start site region 151571
Tssr151572 18 65072267 to 65072279 12 + TSS region transcription start site region 151572
Tssr151573 18 65072293 to 65072321 28 + TSS region transcription start site region 151573
Tssr151574 18 65076032 to 65076061 29 + TSS region transcription start site region 151574
Tssr151575 18 65076070 to 65076101 31 + TSS region transcription start site region 151575
Tssr151576 18 65077631 to 65077639 8 + TSS region transcription start site region 151576
Cpgi10149 18 65083523 to 65084284 761 CpG island CpG island 10149
Tssr151577 18 65083557 to 65083579 22 + TSS region transcription start site region 151577
Tssr151578 18 65083609 to 65083624 15 + TSS region transcription start site region 151578
Tssr151579 18 65143566 to 65143602 36 + TSS region transcription start site region 151579
Tssr151580 18 65143606 to 65143621 15 + TSS region transcription start site region 151580
Tssr151581 18 65143698 to 65143724 26 + TSS region transcription start site region 151581
Tssr153686 18 65152926 to 65152928 2 - TSS region transcription start site region 153686
Tssr151582 18 65172149 to 65172153 4 + TSS region transcription start site region 151582
Tssr151583 18 65178333 to 65178336 3 + TSS region transcription start site region 151583
Gm41755 18 65217775 to 65223110 5335 - lncRNA gene predicted gene, 41755
Tssr153687 18 65220822 to 65220830 8 - TSS region transcription start site region 153687
Tssr153688 18 65222686 to 65222691 5 - TSS region transcription start site region 153688
Tssr5353 18 65222986 to 65222993 7 + TSS region transcription start site region 5353
Gm29966 18 65244273 to 65248058 3785 + lncRNA gene predicted gene, 29966
Tssr151584 18 65244274 to 65244280 6 + TSS region transcription start site region 151584
Tssr151585 18 65244287 to 65244305 18 + TSS region transcription start site region 151585
Tssr151586 18 65244309 to 65244322 13 + TSS region transcription start site region 151586
Tssr151587 18 65245993 to 65246005 12 + TSS region transcription start site region 151587
Tssr151588 18 65246152 to 65246179 27 + TSS region transcription start site region 151588
Tssr151589 18 65247116 to 65247127 11 + TSS region transcription start site region 151589
Tssr151590 18 65247182 to 65247194 12 + TSS region transcription start site region 151590
Tssr151591 18 65248238 to 65248260 22 + TSS region transcription start site region 151591
Mir122 18 65248861 to 65248926 65 + miRNA gene microRNA 122
Tssr151592 18 65248924 to 65248925 1 + TSS region transcription start site region 151592
Alpk2 18 65265529 to 65393888 128359 - protein coding gene alpha-kinase 2
Tssr151593 18 65302927 to 65302966 39 + TSS region transcription start site region 151593
Tssr153689 18 65306050 to 65306065 15 - TSS region transcription start site region 153689
F730048M01Rik 18 65306431 to 65309875 3444 unclassified gene RIKEN cDNA F730048M01 gene
Tssr153690 18 65307739 to 65307770 31 - TSS region transcription start site region 153690
Tssr153691 18 65322139 to 65322152 13 - TSS region transcription start site region 153691
Tssr153692 18 65328628 to 65328644 16 - TSS region transcription start site region 153692
Tssr153693 18 65328682 to 65328696 14 - TSS region transcription start site region 153693
Tssr153694 18 65349756 to 65349778 22 - TSS region transcription start site region 153694
Tssr151594 18 65350050 to 65350071 21 + TSS region transcription start site region 151594
Gm41757 18 65350665 to 65368726 18061 + lncRNA gene predicted gene, 41757
Tssr151595 18 65352406 to 65352412 6 + TSS region transcription start site region 151595
Tssr153695 18 65375401 to 65375416 15 - TSS region transcription start site region 153695
Tssr151596 18 65375670 to 65375710 40 + TSS region transcription start site region 151596
Tssr153696 18 65381657 to 65381680 23 - TSS region transcription start site region 153696
Tssr153697 18 65381896 to 65381919 23 - TSS region transcription start site region 153697
Tssr151597 18 65382049 to 65382073 24 + TSS region transcription start site region 151597
Tssr151598 18 65382074 to 65382098 24 + TSS region transcription start site region 151598
Tssr153698 18 65382520 to 65382531 11 - TSS region transcription start site region 153698
Tssr151599 18 65382690 to 65382712 22 + TSS region transcription start site region 151599
D18Mit182 18 65385206 to 65385316 110 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 182
Tssr151600 18 65386025 to 65386043 18 + TSS region transcription start site region 151600
Tssr151601 18 65386055 to 65386099 44 + TSS region transcription start site region 151601
Tssr153699 18 65393698 to 65393709 11 - TSS region transcription start site region 153699
Tssr153700 18 65393844 to 65393922 78 - TSS region transcription start site region 153700
Tssr153701 18 65393954 to 65393963 9 - TSS region transcription start site region 153701
Tssr153702 18 65393980 to 65393991 11 - TSS region transcription start site region 153702
Tssr153703 18 65394008 to 65394021 13 - TSS region transcription start site region 153703
Tssr151602 18 65412828 to 65412830 2 + TSS region transcription start site region 151602
Tssr151603 18 65412903 to 65412910 7 + TSS region transcription start site region 151603
Tssr151604 18 65414987 to 65414994 7 + TSS region transcription start site region 151604
Tssr151605 18 65414996 to 65415008 12 + TSS region transcription start site region 151605
Tssr153704 18 65416391 to 65416407 16 - TSS region transcription start site region 153704
Gm46618 18 65418971 to 65419388 417 - pseudogene predicted gene, 46618
Gm22567 18 65427469 to 65427810 341 + unclassified non-coding RNA gene predicted gene, 22567
Tssr153705 18 65427807 to 65427809 2 - TSS region transcription start site region 153705
Tssr151606 18 65430108 to 65430111 3 + TSS region transcription start site region 151606
Cpgi10150 18 65430405 to 65431766 1361 CpG island CpG island 10150
Tssr151607 18 65430617 to 65430644 27 + TSS region transcription start site region 151607
Tssr151608 18 65430769 to 65430782 13 + TSS region transcription start site region 151608
Tssr151609 18 65430945 to 65430973 28 + TSS region transcription start site region 151609
Malt1 18 65430962 to 65478823 47861 + protein coding gene MALT1 paracaspase
Tssr151610 18 65430984 to 65431011 27 + TSS region transcription start site region 151610
Tssr151611 18 65431012 to 65431037 25 + TSS region transcription start site region 151611
Tssr151612 18 65431049 to 65431078 29 + TSS region transcription start site region 151612
Tssr151613 18 65431082 to 65431087 5 + TSS region transcription start site region 151613
Tssr151614 18 65431144 to 65431155 11 + TSS region transcription start site region 151614
Tssr151615 18 65432069 to 65432082 13 + TSS region transcription start site region 151615